../../tmp/servers/virsirnadb/986197795
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2189 | 1 | gtttacaactggtgagaca | 19 | |
| DQ450072.1 | Hepatitis E virus isolate swCH31, complete genome | 4229 | ................... | 4247 | 100 |
| AF082843.1 | Swine hepatitis E virus nonstructural polyprotein and putative capsid | 4215 | .................._ | 4232 | 94 |
| AF060669.1 | Hepatitis E virus strain HEV-US2 polyprotein (ORF1), (ORF3), and caps | 4241 | .................._ | 4258 | 94 |
| AP003430.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JRA1 | 4217 | .................._ | 4234 | 94 |
| AB074920.3 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JMY-H | 4218 | .................._ | 4235 | 94 |
| AB089824.1 | Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA10 | 4234 | .................._ | 4251 | 94 |
| AB091394.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JJT-K | 4198 | .................._ | 4215 | 94 |
| AY575857.1 | Hepatitis E virus clone pSHEV-1, complete genome | 4232 | .................._ | 4249 | 94 |
| AY575858.1 | Hepatitis E virus clone pSHEV-2, complete genome | 4232 | .................._ | 4249 | 94 |
| AY575859.1 | Hepatitis E virus clone pSHEV-3, complete genome | 4232 | .................._ | 4249 | 94 |
| AB222182.1 | Hepatitis E virus genomic RNA, complete genome, isolate: wbJSG1 | 4216 | .................._ | 4233 | 94 |
| AB369689.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E | 4196 | .................._ | 4213 | 94 |
| AB369691.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E | 4196 | .................._ | 4213 | 94 |
| AB443625.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 4191 | .................._ | 4208 | 94 |
| AB443627.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 4191 | .................._ | 4208 | 94 |
| AB291963.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JRM-Toy05C | 4216 | .................._ | 4233 | 94 |
| AB481228.1 | Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-M | 4234 | .................._ | 4251 | 94 |
| FJ527832.2 | Hepatitis E virus isolate SAAS-JDY5, complete genome | 4214 | .................._ | 4231 | 94 |
| FJ906896.1 | Hepatitis E virus isolate GDC46, complete genome | 4271 | .................._ | 4288 | 94 |
| FJ906896.1 | Hepatitis E virus isolate GDC46, complete genome | 6474 | ...ct........._____ | 6461 | 63 |
| HQ709170.1 | Hepatitis E virus strain Kernow-C1, complete genome | 4403 | .................._ | 4420 | 94 |
| HQ389543.1 | Hepatitis E virus strain Kernow-C1, complete genome | 4232 | .................._ | 4249 | 94 |
| HQ389544.1 | Hepatitis E virus strain Kernow-C1, complete genome | 4403 | .................._ | 4420 | 94 |
| AB591734.1 | Hepatitis E virus genomic RNA, complete genome, strain: JMNG36-Oki08 | 4228 | .................._ | 4245 | 94 |
| AB220974.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........a......... | 4246 | 94 |
| AJ272108.1 | Hepatitis E virus (genotype 4) complete genome sequence | 4228 | .........a........_ | 4245 | 89 |
| AB073912.1 | Swine hepatitis E virus genomic RNA, complete genome | 4216 | .........c........_ | 4233 | 89 |
| AY115488.1 | Swine hepatitis E virus strain Arkell, complete genome | 4232 | ...c.............._ | 4249 | 89 |
| AF455784.1 | Hepatitis E virus strain Osh 205, complete genome | 4201 | .........c........_ | 4218 | 89 |
| AB189070.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JBOAR1-Hyo04 | 4217 | ......g..........._ | 4234 | 89 |
| AB189071.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER | 4200 | ......g..........._ | 4217 | 89 |
| AB189072.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 4191 | ......g..........._ | 4208 | 89 |
| AB189073.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 4191 | ......g..........._ | 4208 | 89 |
| AB189074.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 4191 | ......g..........._ | 4208 | 89 |
| AB189075.1 | Hepatitis E virus genes for nonstructural protein, capsid protein, hy | 4191 | ......g..........._ | 4208 | 89 |
| AY723745.1 | Hepatitis E virus isolate IND-SW-00-01, complete genome | 4228 | .........a........_ | 4245 | 89 |
| AY723745.1 | Hepatitis E virus isolate IND-SW-00-01, complete genome | 1714 | _______..a......... | 1703 | 57 |
| AB222183.1 | Hepatitis E virus genomic RNA, complete genome, isolate: wbJTS1 | 4216 | ...c.............._ | 4233 | 89 |
| AB222184.1 | Hepatitis E virus genomic RNA, complete genome, isolate: wbJYG1 | 4216 | ............c....._ | 4233 | 89 |
| AB236320.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JMNG-Oki02C | 4216 | .........c........_ | 4233 | 89 |
| AB301710.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: | 4216 | ............a....._ | 4233 | 89 |
| EU366959.1 | Hepatitis E virus isolate swGX32, complete genome | 4229 | .........a........_ | 4246 | 89 |
| AB362843.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p | 4216 | ............a....._ | 4233 | 89 |
| AB362842.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p | 4216 | ............a....._ | 4233 | 89 |
| AB362841.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p | 4216 | ............a....._ | 4233 | 89 |
| AB362840.1 | Hepatitis E virus genomic RNA, complete genome, isolate: 114d/A549 | 4216 | ............a....._ | 4233 | 89 |
| AB362839.1 | Hepatitis E virus genomic RNA, complete genome, isolate: 118d/Alex | 4216 | ............a....._ | 4233 | 89 |
| AB425831.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: | 4216 | ............a....._ | 4233 | 89 |
| AB425830.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: | 4216 | ............a....._ | 4233 | 89 |
| EU723513.1 | Swine hepatitis E virus isolate SW627, complete genome | 4194 | .........a........_ | 4211 | 89 |
| FJ426404.1 | Swine hepatitis E virus isolate swKOR-2, complete genome | 4211 | .........c........_ | 4228 | 89 |
| AB443623.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 4191 | ...c.............._ | 4208 | 89 |
| AB443624.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 4191 | ...c.............._ | 4208 | 89 |
| AB443626.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s | 4191 | ...c.............._ | 4208 | 89 |
| AB291951.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-S | 4196 | ...c.............._ | 4213 | 89 |
| AB291952.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIY-T | 4196 | ...c.............._ | 4213 | 89 |
| AB291953.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSO-O | 4196 | ...c.............._ | 4213 | 89 |
| AB291954.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSS-O | 4196 | ...c.............._ | 4213 | 89 |
| AB291955.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSW-K | 4196 | ...c.............._ | 4213 | 89 |
| AB291956.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYM-T | 4196 | ...c.............._ | 4213 | 89 |
| AB291957.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYU-O | 4196 | ...c.............._ | 4213 | 89 |
| AB291960.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JTK-Kag06C | 4217 | ...c.............._ | 4234 | 89 |
| AB437316.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: | 4216 | ............a....._ | 4233 | 89 |
| AB437319.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: | 3858 | ............a....._ | 3875 | 89 |
| EU723512.2 | Swine hepatitis E virus isolate SW626, complete genome | 4219 | .........a........_ | 4236 | 89 |
| AB481229.1 | Swine hepatitis E virus genomic RNA, complete genome, isolate: swJR-P | 4216 | .........c........_ | 4233 | 89 |
| AB437317.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: | 4216 | ............a....._ | 4233 | 89 |
| AB437318.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: | 4216 | ............a....._ | 4233 | 89 |
| GU119960.2 | Swine hepatitis E virus isolate CHN-XJ-SW33, complete genome | 4225 | .........g........_ | 4242 | 89 |
| AB591733.1 | Hepatitis E virus genomic RNA, complete genome, strain: JMNG26-Oki08 | 4216 | .........c........_ | 4233 | 89 |
| AB074917.3 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JKK-S | 4212 | .........g..c...... | 4230 | 89 |
| AB108537.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC220 | 4209 | ......c..a......... | 4227 | 89 |
| AB220972.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........g..c...... | 4246 | 89 |
| AB220973.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........g..c...... | 4246 | 89 |
| AB220975.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........g..c...... | 4246 | 89 |
| AB220976.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........g..c...... | 4246 | 89 |
| AB220977.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........g..c...... | 4246 | 89 |
| AB220978.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........g..c...... | 4246 | 89 |
| AB220979.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........g..c...... | 4246 | 89 |
| AB369688.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E | 4205 | .........a..c...... | 4223 | 89 |
| AB369690.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E | 4214 | ............c..a... | 4232 | 89 |
| AB291959.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JTC-K | 4188 | .........g..c...... | 4206 | 89 |
| AB291965.1 | Hepatitis E virus genomic RNA, complete genome, isolate: HRC-HE14C | 4228 | .........g..c...... | 4246 | 89 |
| AB291966.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JST-KitAsa04 | 4228 | .........g..c...... | 4246 | 89 |
| AB291967.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JKO-Aba-FH06 | 4228 | .........g..c...... | 4246 | 89 |
| AB291968.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JMM-Aba06C | 4228 | .........g..c...... | 4246 | 89 |
| AB480825.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4228 | .........g..c...... | 4246 | 89 |
| HM439284.1 | Hepatitis E virus isolate EChZ20, complete genome | 4219 | ...c...........a... | 4237 | 89 |
| AB074918.2 | Hepatitis E virus genomic RNA, complete genome, isolate: JKN-Sap | 4235 | _..c.............._ | 4251 | 84 |
| AB246676.1 | Hepatitis E virus genomic RNA, complete genome, isolate:HEVN1 | 4217 | _..c.............._ | 4233 | 84 |
| AB197674.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JYI-ChiSai01 | 4226 | _..c.....g......... | 4243 | 84 |
| FJ426403.1 | Swine hepatitis E virus isolate swKOR-1, complete genome | 4211 | .........c..c....._ | 4228 | 84 |
| AB291962.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JHK-Toy04C | 4216 | .........c..c....._ | 4233 | 84 |
| AB291964.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JYK-Tok03C | 4224 | _.....c..a......... | 4241 | 84 |
| GU361892.1 | Swine hepatitis E virus strain hb-3, complete genome | 4228 | .........a.....a.._ | 4245 | 84 |
| AB602441.1 | Hepatitis E virus genomic RNA, complete genome, isolate: wbJOY_06 | 4234 | ......c.........c._ | 4251 | 84 |
| EU375463.1 | Hepatitis E virus isolate Thai-swHEV07, complete genome | 5521 | ________........... | 5511 | 57 |
| AY535004.1 | Avian hepatitis E virus, complete genome | 490 | _______..........__ | 481 | 52 |
| EF206691.1 | Avian hepatitis E virus from USA, complete genome | 490 | _______..........__ | 481 | 52 |