../../tmp/servers/virsirnadb/1566333222
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2064 | 1 | gtttgccataaagccaggt | 19 | |
| NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 396 | ................... | 414 | 100 |
| NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 396 | ................... | 414 | 100 |
| AF174384.1 | Reovirus 3 major nonstructural protein mu-NS gene, complete cds | 400 | _.................. | 417 | 94 |
| EF494440.1 | Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence | 400 | _.................. | 417 | 94 |
| GU589582.1 | Mammalian orthoreovirus 3 strain Abney segment M3, complete sequence | 400 | _.................. | 417 | 94 |
| HM159618.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq | 400 | _.................. | 417 | 94 |
| GU991664.1 | Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence | 400 | _.................. | 417 | 94 |
| GU991674.1 | Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence | 400 | _.................. | 417 | 94 |
| NC_013230.1 | Mammalian orthoreovirus 3 segment M3, complete genome | 400 | _..c............... | 417 | 89 |
| DQ403254.1 | Mammalian orthoreovirus strain SC-A segment M3 mu-NS protein gene, co | 400 | _..c............... | 417 | 89 |
| DQ403254.1 | Mammalian orthoreovirus strain SC-A segment M3 mu-NS protein gene, co | 1915 | .........__________ | 1907 | 47 |
| GU196314.1 | Mammalian orthoreovirus 2 segment M3 uNS protein gene, complete cds | 389 | _..c............... | 406 | 89 |
| AF368034.1 | Ndelle virus segment M2, complete sequence | 962 | ..........cc...____ | 976 | 68 |
| NC_004275.1 | Mammalian orthoreovirus 3 segment L2, complete sequence | 234 | _____.........tg... | 221 | 63 |
| NC_004278.1 | Mammalian orthoreovirus 3 segment M2, complete sequence | 963 | .........._________ | 972 | 52 |
| NC_004278.1 | Mammalian orthoreovirus 3 segment M2, complete sequence | 963 | .........._________ | 972 | 52 |
| M20161.1 | REO3OCPMUA Reovirus type 3 Dearing outer capsid protein (mu-1) RNA, co | 962 | .........._________ | 971 | 52 |
| U24260.1 | RSU24260 Reovirus type 3 (M2) mRNA, complete cds | 962 | .........._________ | 971 | 52 |
| DQ664188.1 | Mammalian orthoreovirus 2 isolate BYD1 segment M2, complete sequence | 962 | .........._________ | 971 | 52 |
| EF494439.1 | Mammalian orthoreovirus 3 strain T3D segment M2, complete sequence | 962 | .........._________ | 971 | 52 |
| GU196310.1 | Mammalian orthoreovirus 2 segment M2 u1 protein gene, complete cds | 960 | .........._________ | 969 | 52 |
| GU589581.1 | Mammalian orthoreovirus 3 strain Abney segment M2, complete sequence | 963 | .........._________ | 972 | 52 |
| HM159617.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M2, complete seq | 963 | .........._________ | 972 | 52 |
| GU991663.1 | Mammalian orthoreovirus 3 isolate R124 segment M2, complete sequence | 962 | .........._________ | 971 | 52 |
| GU991673.1 | Mammalian orthoreovirus 3 isolate Q2R segment M2, complete sequence | 962 | .........._________ | 971 | 52 |
| HQ642773.1 | Mammalian orthoreovirus strain MRV-HLJ/2007 mu-1 protein gene, comple | 954 | .........._________ | 963 | 52 |
| NC_013226.1 | Mammalian orthoreovirus 3 segment L2, complete genome | 1036 | ____.........g.____ | 1026 | 52 |
| NC_013226.1 | Mammalian orthoreovirus 3 segment L2, complete genome | 1921 | _______.........___ | 1929 | 47 |
| NC_013226.1 | Mammalian orthoreovirus 3 segment L2, complete genome | 2148 | _________........._ | 2140 | 47 |
| NC_013228.1 | Mammalian orthoreovirus 3 segment M2, complete genome | 934 | _........._________ | 942 | 47 |
| NC_004274.1 | Mammalian orthoreovirus 3 segment L3, complete sequence | 1813 | _______.........___ | 1805 | 47 |
| M19407.1 | REO1M2A Reovirus serotype 1 M2 gene encoding mu-1/mu-1C, complete cds | 963 | .........__________ | 971 | 47 |
| M23747.1 | REOMCPL1A Reovirus type 3 major core protein lambda-1 from L3 genome s | 1810 | _______.........___ | 1802 | 47 |
| DQ664186.1 | Mammalian orthoreovirus 2 isolate BYD1 segment L3, complete sequence | 1813 | _______.........___ | 1805 | 47 |
| EF029088.1 | Mammalian orthoreovirus isolate SC-A segment L3, complete sequence | 1813 | _______.........___ | 1805 | 47 |
| EF494437.1 | Mammalian orthoreovirus 3 strain T3D segment L3, complete sequence | 1813 | _______.........___ | 1805 | 47 |
| GU196308.1 | Mammalian orthoreovirus 2 segment L3 lambda-1 protein gene, complete | 1811 | _______.........___ | 1803 | 47 |
| GU589579.1 | Mammalian orthoreovirus 3 strain Abney segment L3, complete sequence | 1813 | _______.........___ | 1805 | 47 |
| HM159615.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment L3, complete seq | 1813 | _______.........___ | 1805 | 47 |
| GU991661.1 | Mammalian orthoreovirus 3 isolate R124 segment L3, complete sequence | 1813 | _______.........___ | 1805 | 47 |
| GU991671.1 | Mammalian orthoreovirus 3 isolate Q2R segment L3, complete sequence | 1813 | _______.........___ | 1805 | 47 |
| NC_004274.1 | Mammalian orthoreovirus 3 segment L3, complete sequence | 1813 | _______.........___ | 1805 | 47 |