../../tmp/servers/virsirnadb/245949146
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2033 | 1 | taccacatcaaatgcagcc | 19 | |
| L24917.1 | HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS | 2404 | ................... | 2422 | 100 |
| L24917.1 | HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS | 6919 | _....tc..........__ | 6934 | 73 |
| DQ473502.1 | Human rhinovirus 76, complete genome | 2401 | .................._ | 2418 | 94 |
| FJ445182.1 | Human rhinovirus 76 strain ATCC VR-1186, complete genome | 2400 | .................._ | 2417 | 94 |
| FJ445128.1 | Human rhinovirus 33 strain ATCC VR-330, complete genome | 2402 | _............t...._ | 2418 | 84 |
| FJ445128.1 | Human rhinovirus 33 strain ATCC VR-330, complete genome | 6969 | .g............_____ | 6956 | 68 |
| EF173414.1 | Human rhinovirus 11, complete genome | 2394 | ............ct...._ | 2411 | 84 |
| EF173414.1 | Human rhinovirus 11, complete genome | 6912 | _....tca.........__ | 6927 | 68 |
| FJ445131.1 | Human rhinovirus 43 strain ATCC VR-1153, complete genome | 2396 | _..a.....c......... | 2413 | 84 |
| FJ445131.1 | Human rhinovirus 43 strain ATCC VR-1153, complete genome | 6922 | _....tca.........__ | 6937 | 68 |
| FJ445148.1 | Human rhinovirus 66 strain ATCC VR-1176, complete genome | 2402 | _.g............t... | 2419 | 84 |
| FJ445148.1 | Human rhinovirus 66 strain ATCC VR-1176, complete genome | 5216 | _.............g.___ | 5230 | 73 |
| FJ445148.1 | Human rhinovirus 66 strain ATCC VR-1176, complete genome | 6925 | _....tc..........__ | 6940 | 73 |
| FJ445120.1 | Human rhinovirus 20 strain ATCC VR-1130, complete genome | 2407 | ____.............._ | 2420 | 73 |
| GQ415052.1 | Human rhinovirus A isolate hrv-A101-v1, complete genome | 2394 | ..a...t..t......... | 2412 | 84 |
| DQ473495.1 | Human rhinovirus 38, complete genome | 2393 | _.g..........t...._ | 2409 | 78 |
| DQ473495.1 | Human rhinovirus 38, complete genome | 6922 | _....tc..........__ | 6937 | 73 |
| FJ445140.1 | Human rhinovirus 56 strain ATCC VR-1166, complete genome | 2406 | __...........t.t... | 2422 | 78 |
| FJ445140.1 | Human rhinovirus 56 strain ATCC VR-1166, complete genome | 6922 | _....tc..........__ | 6937 | 73 |
| FJ445140.1 | Human rhinovirus 56 strain ATCC VR-1166, complete genome | 1599 | ________........... | 1609 | 57 |
| FJ445141.1 | Human rhinovirus 57 isolate fs ship#1-hrv-57, complete genome | 2397 | _..a.........t...._ | 2413 | 78 |
| FJ445146.1 | Human rhinovirus 63 strain ATCC VR-1173, complete genome | 2410 | _...........c..t.._ | 2426 | 78 |
| FJ445163.1 | Human rhinovirus 85 strain ATCC VR-1195, complete genome | 2409 | _..t.........t...._ | 2425 | 78 |
| FJ445163.1 | Human rhinovirus 85 strain ATCC VR-1195, complete genome | 1529 | .g..........a._____ | 1542 | 63 |
| FJ445180.1 | Human rhinovirus 38 strain ATCC VR-1148, complete genome | 2393 | _.g..........t...._ | 2409 | 78 |
| FJ445180.1 | Human rhinovirus 38 strain ATCC VR-1148, complete genome | 6922 | _....tc..........__ | 6937 | 73 |
| DQ473512.1 | Human rhinovirus 30, complete genome | 4170 | ___.............a._ | 4184 | 73 |
| FJ445118.1 | Human rhinovirus 18 strain ATCC VR-1128, complete genome | 2388 | ____.........t..... | 2402 | 73 |
| FJ445118.1 | Human rhinovirus 18 strain ATCC VR-1128, complete genome | 6905 | _....tc..........__ | 6920 | 73 |
| FJ445150.1 | Human rhinovirus 68 strain ATCC VR-1178, complete genome | 2408 | ____..t............ | 2422 | 73 |
| FJ445150.1 | Human rhinovirus 68 strain ATCC VR-1178, complete genome | 4331 | _..........________ | 4340 | 52 |
| FJ445179.1 | Human rhinovirus 30 strain ATCC VR-1140, complete genome | 4164 | ___.............a._ | 4178 | 73 |
| X02316.1 | Human rhinovirus 2, complete sequence | 2387 | _..a.........t.t... | 2404 | 78 |
| DQ473501.1 | Human rhinovirus 34, complete genome | 2385 | _...........ct.t... | 2402 | 78 |
| DQ473501.1 | Human rhinovirus 34, complete genome | 6905 | _....tc.........___ | 6919 | 68 |
| FJ445123.1 | Human rhinovirus 25 strain ATCC VR-1135, complete genome | 2407 | _.g..........t.t... | 2424 | 78 |
| FJ445123.1 | Human rhinovirus 25 strain ATCC VR-1135, complete genome | 6912 | _....tc..........__ | 6927 | 73 |
| FJ445129.1 | Human rhinovirus 40 strain ATCC VR-341, complete genome | 2407 | _..t.........t.g... | 2424 | 78 |
| FJ445189.1 | Human rhinovirus 34 strain ATCC VR-1144, complete genome | 2385 | _...........ct.t... | 2402 | 78 |
| FJ445189.1 | Human rhinovirus 34 strain ATCC VR-1144, complete genome | 6905 | _....tc.........___ | 6919 | 68 |
| DQ473511.1 | Human rhinovirus 55, complete genome | 2303 | __.a.........t...._ | 2318 | 73 |
| DQ473511.1 | Human rhinovirus 55, complete genome | 5112 | ...a.........._____ | 5125 | 68 |
| EF173416.1 | Human rhinovirus 24, complete genome | 6918 | _....tc..........__ | 6933 | 73 |
| FJ445122.1 | Human rhinovirus 22 strain ATCC VR-1132, complete genome | 6917 | _....tc..........__ | 6932 | 73 |
| FJ445122.1 | Human rhinovirus 22 strain ATCC VR-1132, complete genome | 2394 | ____...........t.._ | 2407 | 68 |
| FJ445145.1 | Human rhinovirus 62 strain ATCC VR-1172, complete genome | 6917 | _....tc..........__ | 6932 | 73 |
| FJ445154.1 | Human rhinovirus 77 strain ATCC VR-1187, complete genome | 6922 | _....tc..........__ | 6937 | 73 |
| FJ445177.1 | Human rhinovirus 9 strain ATCC VR-489, complete genome | 6920 | _....tc..........__ | 6935 | 73 |
| FJ445177.1 | Human rhinovirus 9 strain ATCC VR-489, complete genome | 6970 | .g............_____ | 6957 | 68 |
| FJ445190.1 | Human rhinovirus 24 strain ATCC VR-1134, complete genome | 6918 | _....tc..........__ | 6933 | 73 |
| D00239.1 | HRVACG Human rhinovirus 1B, complete genome | 6978 | .g............_____ | 6965 | 68 |
| D00239.1 | HRVACG Human rhinovirus 1B, complete genome | 2408 | _..t.........t.t.._ | 2424 | 73 |
| FJ445117.1 | Human rhinovirus 13 isolate F03, complete genome | 4212 | ____...a.........._ | 4225 | 68 |
| FJ445117.1 | Human rhinovirus 13 isolate F03, complete genome | 6981 | .g............_____ | 6968 | 68 |
| FJ445119.1 | Human rhinovirus 19 strain ATCC VR-1129, complete genome | 2397 | ____...........t.._ | 2410 | 68 |
| FJ445119.1 | Human rhinovirus 19 strain ATCC VR-1129, complete genome | 6923 | _...ttc..........__ | 6938 | 68 |
| FJ445119.1 | Human rhinovirus 19 strain ATCC VR-1129, complete genome | 5809 | _.a.........gaa..._ | 5793 | 68 |
| FJ445171.1 | Human rhinovirus 96 strain ATCC VR-1296, complete genome | 6973 | .g............_____ | 6960 | 68 |
| FJ445114.1 | Human rhinovirus 9 isolate F01, complete genome | 6922 | _....tc.........___ | 6936 | 68 |
| FJ445115.1 | Human rhinovirus 9 isolate F02, complete genome | 6921 | _....tc.........___ | 6935 | 68 |
| GU219984.1 | Human rhinovirus C strain HRV-C15 isolate W10, complete genome | 1374 | .c...........______ | 1386 | 63 |
| EF173423.1 | Human rhinovirus 37, complete genome | 4339 | _..........t.._____ | 4351 | 63 |
| M16248.1 | HRV89 Human rhinovirus type 89 (HRV89), complete genome | 4232 | ____.t...........__ | 4244 | 63 |
| FJ445184.1 | Human rhinovirus 89 strain ATCC VR-1199, complete genome | 4232 | ____.t...........__ | 4244 | 63 |
| NC_001617.1 | Human rhinovirus 89, complete genome | 4232 | ____.t...........__ | 4244 | 63 |
| DQ473498.1 | Human rhinovirus 10, complete genome | 6923 | _....tcc.........__ | 6938 | 68 |
| FJ445127.1 | Human rhinovirus 32 strain ATCC VR-1142, complete genome | 6919 | _....tcc.........__ | 6934 | 68 |
| FJ445135.1 | Human rhinovirus 50 strain ATCC VR-517, complete genome | 6904 | _....tca.........__ | 6919 | 68 |
| FJ445157.1 | Human rhinovirus 81 strain ATCC VR-1191, complete genome | 6911 | _....tca.........__ | 6926 | 68 |
| FJ445178.1 | Human rhinovirus 10 strain ATCC VR-1120, complete genome | 6923 | _....tcc.........__ | 6938 | 68 |
| EF582387.1 | Human rhinovirus C strain 026, complete genome | 6919 | .g..........a._____ | 6906 | 63 |
| GQ323774.1 | Human rhinovirus C strain QCE, complete genome | 6889 | .g..........a._____ | 6876 | 63 |
| DQ473487.1 | Human rhinovirus 35, complete genome | 4813 | ..ga.........._____ | 4826 | 63 |
| DQ473487.1 | Human rhinovirus 35, complete genome | 4178 | _.........c..______ | 4167 | 57 |
| EF173424.1 | Human rhinovirus 52, complete genome | 4711 | ____.a..t........._ | 4724 | 63 |
| FJ445168.1 | Human rhinovirus 91 strain ATCC VR-1292, complete genome | 910 | _____..g.........t. | 923 | 63 |
| FJ445174.1 | Human rhinovirus 99 strain ATCC VR-1299, complete genome | 160 | .........c.g.._____ | 173 | 63 |
| FJ445187.1 | Human rhinovirus 35 strain ATCC VR-1145, complete genome | 4813 | ..ga.........._____ | 4826 | 63 |
| FJ445187.1 | Human rhinovirus 35 strain ATCC VR-1145, complete genome | 4178 | _.........c..______ | 4167 | 57 |
| FJ445188.1 | Human rhinovirus 52 strain ATCC VR-1162, complete genome | 4711 | ____.a..t........._ | 4724 | 63 |
| DQ473496.1 | Human rhinovirus 49, complete genome | 3905 | _____...gc......... | 3918 | 63 |
| DQ473508.1 | Human rhinovirus 28, complete genome | 2410 | ____..ta.........._ | 2423 | 63 |
| FJ445134.1 | Human rhinovirus 49 isolate F04, complete genome | 3908 | _____...gt......... | 3921 | 63 |
| FJ445136.1 | Human rhinovirus 51 strain ATCC VR-1161, complete genome | 901 | ___..t.g.........__ | 914 | 63 |
| EF173420.1 | Human rhinovirus 17, complete genome | 908 | _____..g.........__ | 919 | 57 |
| FJ445151.1 | Human rhinovirus 69 strain ATCC VR-1179, complete genome | 4344 | _..........t.______ | 4355 | 57 |
| EF173418.1 | Human rhinovirus 78, complete genome | 1889 | __.........c.._____ | 1878 | 57 |
| FJ445183.1 | Human rhinovirus 78 strain ATCC VR-1188, complete genome | 1889 | __.........c.._____ | 1878 | 57 |
| L05355.1 | HRV14POL Human rhinovirus type 14 polyprotein gene | 3227 | ____.........._____ | 3236 | 52 |
| NC_001490.1 | Human rhinovirus 14, complete genome | 3227 | ____.........._____ | 3236 | 52 |
| AY751783.1 | Human rhinovirus 39, complete genome | 5516 | .........._________ | 5507 | 52 |
| FJ445113.1 | Human rhinovirus 8 strain ATCC VR-1118, complete genome | 5499 | .........._________ | 5490 | 52 |
| FJ445170.1 | Human rhinovirus 95 strain ATCC VR-1301, complete genome | 5501 | .........._________ | 5492 | 52 |