../../tmp/servers/virsirnadb/1227577981
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1013 | 1 | tagaggtggaacttactat | 19 | |
| M59808.1 | HPA18F Hepatitis A virus polyprotein RNA, complete cds | 5451 | ................... | 5469 | 100 |
| M59810.1 | HPA24A Hepatitis A virus polyprotein RNA, complete cds | 5452 | ................... | 5470 | 100 |
| M59809.1 | HPA43C Hepatitis A virus polyprotein RNA, complete cds | 5451 | ................... | 5469 | 100 |
| M16632.1 | HPAA Hepatitis A virus (attenuated) RNA, complete genome | 5466 | ................... | 5484 | 100 |
| K02990.1 | HPAACG Human hepatitis A virus, complete genome | 5470 | ................... | 5488 | 100 |
| K02990.1 | HPAACG Human hepatitis A virus, complete genome | 3212 | __.........________ | 3204 | 47 |
| M20273.1 | HPACG Human hepatitis virus type A RNA, complete genome | 5463 | ................... | 5481 | 100 |
| X75214.1 | Hepatitis A virus GBM/FRhK RNA | 5397 | ................... | 5415 | 100 |
| X75214.1 | Hepatitis A virus GBM/FRhK RNA | 3148 | __.........________ | 3140 | 47 |
| X75215.1 | Hepatitis A virus GBM/WT RNA | 5424 | ................... | 5442 | 100 |
| X75215.1 | Hepatitis A virus GBM/WT RNA | 3166 | __.........________ | 3158 | 47 |
| X75216.1 | Hepatitis A virus GBM/HFS RNA | 5424 | ................... | 5442 | 100 |
| X75216.1 | Hepatitis A virus GBM/HFS RNA | 3166 | __.........________ | 3158 | 47 |
| X83302.1 | Hepatitis A virus complete genome | 5415 | ................... | 5433 | 100 |
| X83302.1 | Hepatitis A virus complete genome | 3166 | __.........________ | 3158 | 47 |
| AB020564.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH1 | 5470 | ................... | 5488 | 100 |
| AB020564.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH1 | 3212 | __.........________ | 3204 | 47 |
| AB020565.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH2 | 5470 | ................... | 5488 | 100 |
| AB020565.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH2 | 3212 | __.........________ | 3204 | 47 |
| AB020566.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH3 | 5471 | ................... | 5489 | 100 |
| AB020566.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH3 | 3213 | __.........________ | 3205 | 47 |
| AB020568.1 | Hepatitis A virus genomic RNA, complete sequence, isolate FH2 | 5471 | ................... | 5489 | 100 |
| AF268396.1 | Hepatitis A virus polyprotein precursor, gene, complete cds | 5461 | ................... | 5479 | 100 |
| AF314208.1 | Hepatitis A virus polyprotein gene, complete cds | 5467 | ................... | 5485 | 100 |
| AF485328.1 | Hepatitis A virus isolate LY6, complete genome | 5470 | ................... | 5488 | 100 |
| AF357222.1 | Hepatitis A virus isolate LU38/WT polyprotein gene, complete cds | 5470 | ................... | 5488 | 100 |
| AF357222.1 | Hepatitis A virus isolate LU38/WT polyprotein gene, complete cds | 3212 | __.........________ | 3204 | 47 |
| AF512536.1 | Hepatitis A virus isolate DL3, complete genome | 5469 | ................... | 5487 | 100 |
| AF512536.1 | Hepatitis A virus isolate DL3, complete genome | 3211 | __.........________ | 3203 | 47 |
| DQ646426.1 | Hepatitis A virus strain IVA, complete genome | 5481 | ................... | 5499 | 100 |
| EF207320.1 | Hepatitis A virus strain LP014, complete genome | 5424 | ................... | 5442 | 100 |
| EF207320.1 | Hepatitis A virus strain LP014, complete genome | 3166 | __.........________ | 3158 | 47 |
| EF406357.1 | Hepatitis A virus strain H2 polyprotein gene, complete cds | 5417 | ................... | 5435 | 100 |
| EF406357.1 | Hepatitis A virus strain H2 polyprotein gene, complete cds | 3159 | __.........________ | 3151 | 47 |
| EF406358.1 | Hepatitis A virus strain H2K5 polyprotein gene, complete cds | 5414 | ................... | 5432 | 100 |
| EF406359.1 | Hepatitis A virus strain H2K10 polyprotein gene, complete cds | 5413 | ................... | 5431 | 100 |
| EF406360.1 | Hepatitis A virus strain H2K15 polyprotein gene, complete cds | 5414 | ................... | 5432 | 100 |
| EF406361.1 | Hepatitis A virus strain H2K20 polyprotein gene, complete cds | 5414 | ................... | 5432 | 100 |
| EF406362.1 | Hepatitis A virus strain H2K25 polyprotein gene, complete cds | 5414 | ................... | 5432 | 100 |
| EF406363.1 | Hepatitis A virus strain H2K30 polyprotein gene, complete cds | 5414 | ................... | 5432 | 100 |
| EU131373.1 | Hepatitis A virus genomic RNA, complete sequence, isolate HAV5 | 5471 | ................... | 5489 | 100 |
| EU251188.1 | Hepatitis A virus strain VBA-07, complete genome | 5480 | ................... | 5498 | 100 |
| EU251188.1 | Hepatitis A virus strain VBA-07, complete genome | 3228 | __.........________ | 3220 | 47 |
| EU526088.1 | Hepatitis A virus isolate HAV6, complete genome | 5469 | ................... | 5487 | 100 |
| EU526088.1 | Hepatitis A virus isolate HAV6, complete genome | 3211 | __.........________ | 3203 | 47 |
| EU526089.1 | Hepatitis A virus isolate HAV12, complete genome | 5471 | ................... | 5489 | 100 |
| EU526089.1 | Hepatitis A virus isolate HAV12, complete genome | 1597 | __.........t.a.____ | 1609 | 57 |
| EU526089.1 | Hepatitis A virus isolate HAV12, complete genome | 3213 | __.........________ | 3205 | 47 |
| HQ437707.1 | Hepatitis A virus strain HepA-293, complete genome | 5480 | ................... | 5498 | 100 |
| HQ437707.1 | Hepatitis A virus strain HepA-293, complete genome | 3228 | __.........________ | 3220 | 47 |
| HM769724.1 | Hepatitis A virus isolate HAV-Arg/06, complete genome | 5470 | ................... | 5488 | 100 |
| HM769724.1 | Hepatitis A virus isolate HAV-Arg/06, complete genome | 3212 | __.........________ | 3204 | 47 |
| M14707.1 | HPA Hepatitis A virus (wild-type) RNA, complete genome | 5471 | ................... | 5489 | 100 |
| AB020567.1 | Hepatitis A virus genomic RNA, complete sequence, isolate FH1 | 5470 | .................._ | 5487 | 94 |
| AB020567.1 | Hepatitis A virus genomic RNA, complete sequence, isolate FH1 | 3212 | __.........________ | 3204 | 47 |
| AB020569.1 | Hepatitis A virus genomic RNA, complete sequence, isolate FH3 | 5471 | _.................. | 5488 | 94 |
| AB020569.1 | Hepatitis A virus genomic RNA, complete sequence, isolate FH3 | 3212 | __.........g.______ | 3202 | 52 |
| AB258387.1 | Hepatitis A virus genomic RNA, complete genome, subgenotype IIIB, clo | 5452 | .........c......... | 5470 | 94 |
| AB300205.1 | Hepatitis A virus genomic RNA, complete genome, sub_strain: KRM238G59 | 5453 | .........t......... | 5471 | 94 |
| AB279735.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HAJ85-1 | 5452 | .........t......... | 5470 | 94 |
| AB425339.1 | Hepatitis A virus genomic RNA, complete genome, sub_strain: KRM003G72 | 5452 | .........t......... | 5470 | 94 |
| AY644676.1 | Hepatitis A virus isolate CF53/Berne, complete genome | 5416 | .........t.....t... | 5434 | 89 |
| AY644676.1 | Hepatitis A virus isolate CF53/Berne, complete genome | 3164 | __.........________ | 3156 | 47 |
| AY644676.1 | Hepatitis A virus isolate CF53/Berne, complete genome | 4379 | _........._________ | 4387 | 47 |
| DQ991029.1 | Hepatitis A virus isolate CP-IND, complete genome | 5453 | .........t.....t... | 5471 | 89 |
| FJ360730.1 | Hepatitis A virus isolate IND-HAV-06F, complete genome | 5452 | .........t.....t... | 5470 | 89 |
| FJ360731.1 | Hepatitis A virus isolate IND-HAV-07F, complete genome | 5452 | .........t.....t... | 5470 | 89 |
| FJ360733.1 | Hepatitis A virus isolate IND-HAV-95F, complete genome | 5452 | .........t.....t... | 5470 | 89 |
| FJ360734.1 | Hepatitis A virus isolate IND-HAV-99F, complete genome | 5452 | .........t.....t... | 5470 | 89 |
| AY644337.1 | Hepatitis A virus strain HMH polyprotein gene, partial cds | 5407 | .........t.....t.._ | 5424 | 84 |
| AJ299464.3 | Hepatitis A virus polyprotein, genomic RNA, strain NOR-21 | 5374 | .........t.....t.._ | 5391 | 84 |
| AB279732.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG04-90 | 5452 | .........t.....t.._ | 5469 | 84 |
| EU011791.1 | Hepatitis A virus isolate PN-IND, complete genome | 5416 | .........t.....t.._ | 5433 | 84 |
| FJ360735.1 | Hepatitis A virus isolate IND-HAV-97F, complete genome | 5452 | .........t.....t.._ | 5469 | 84 |
| FJ360732.1 | Hepatitis A virus isolate IND-HAV-08F, complete genome | 5452 | .........tg....t... | 5470 | 84 |
| D00924.1 | SHVAGM27 Simian hepatitis A virus gene for polyprotein, complete cds | 4375 | _........._________ | 4383 | 47 |
| AY644670.1 | Hepatitis A virus strain SLF88, complete genome | 3163 | __.........________ | 3155 | 47 |
| EU140838.1 | Simian hepatitis A virus, complete genome | 4375 | _........._________ | 4383 | 47 |