../../tmp/servers/virsirnadb/519438080
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi10131tagaggtggaacttactat19
M59808.1HPA18F Hepatitis A virus polyprotein RNA, complete cds 5451...................5469100
M59810.1HPA24A Hepatitis A virus polyprotein RNA, complete cds 5452...................5470100
M59809.1HPA43C Hepatitis A virus polyprotein RNA, complete cds 5451...................5469100
M16632.1HPAA Hepatitis A virus (attenuated) RNA, complete genome 5466...................5484100
K02990.1HPAACG Human hepatitis A virus, complete genome 5470...................5488100
K02990.1HPAACG Human hepatitis A virus, complete genome 3212__.........________320447
M20273.1HPACG Human hepatitis virus type A RNA, complete genome 5463...................5481100
X75214.1 Hepatitis A virus GBM/FRhK RNA 5397...................5415100
X75214.1 Hepatitis A virus GBM/FRhK RNA 3148__.........________314047
X75215.1 Hepatitis A virus GBM/WT RNA 5424...................5442100
X75215.1 Hepatitis A virus GBM/WT RNA 3166__.........________315847
X75216.1 Hepatitis A virus GBM/HFS RNA 5424...................5442100
X75216.1 Hepatitis A virus GBM/HFS RNA 3166__.........________315847
X83302.1 Hepatitis A virus complete genome 5415...................5433100
X83302.1 Hepatitis A virus complete genome 3166__.........________315847
AB020564.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH1 5470...................5488100
AB020564.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH1 3212__.........________320447
AB020565.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH2 5470...................5488100
AB020565.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH2 3212__.........________320447
AB020566.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH3 5471...................5489100
AB020566.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH3 3213__.........________320547
AB020568.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH2 5471...................5489100
AF268396.1 Hepatitis A virus polyprotein precursor, gene, complete cds 5461...................5479100
AF314208.1 Hepatitis A virus polyprotein gene, complete cds 5467...................5485100
AF485328.1 Hepatitis A virus isolate LY6, complete genome 5470...................5488100
AF357222.1 Hepatitis A virus isolate LU38/WT polyprotein gene, complete cds 5470...................5488100
AF357222.1 Hepatitis A virus isolate LU38/WT polyprotein gene, complete cds 3212__.........________320447
AF512536.1 Hepatitis A virus isolate DL3, complete genome 5469...................5487100
AF512536.1 Hepatitis A virus isolate DL3, complete genome 3211__.........________320347
DQ646426.1 Hepatitis A virus strain IVA, complete genome 5481...................5499100
EF207320.1 Hepatitis A virus strain LP014, complete genome 5424...................5442100
EF207320.1 Hepatitis A virus strain LP014, complete genome 3166__.........________315847
EF406357.1 Hepatitis A virus strain H2 polyprotein gene, complete cds 5417...................5435100
EF406357.1 Hepatitis A virus strain H2 polyprotein gene, complete cds 3159__.........________315147
EF406358.1 Hepatitis A virus strain H2K5 polyprotein gene, complete cds 5414...................5432100
EF406359.1 Hepatitis A virus strain H2K10 polyprotein gene, complete cds 5413...................5431100
EF406360.1 Hepatitis A virus strain H2K15 polyprotein gene, complete cds 5414...................5432100
EF406361.1 Hepatitis A virus strain H2K20 polyprotein gene, complete cds 5414...................5432100
EF406362.1 Hepatitis A virus strain H2K25 polyprotein gene, complete cds 5414...................5432100
EF406363.1 Hepatitis A virus strain H2K30 polyprotein gene, complete cds 5414...................5432100
EU131373.1 Hepatitis A virus genomic RNA, complete sequence, isolate HAV5 5471...................5489100
EU251188.1 Hepatitis A virus strain VBA-07, complete genome 5480...................5498100
EU251188.1 Hepatitis A virus strain VBA-07, complete genome 3228__.........________322047
EU526088.1 Hepatitis A virus isolate HAV6, complete genome 5469...................5487100
EU526088.1 Hepatitis A virus isolate HAV6, complete genome 3211__.........________320347
EU526089.1 Hepatitis A virus isolate HAV12, complete genome 5471...................5489100
EU526089.1 Hepatitis A virus isolate HAV12, complete genome 1597__.........t.a.____160957
EU526089.1 Hepatitis A virus isolate HAV12, complete genome 3213__.........________320547
HQ437707.1 Hepatitis A virus strain HepA-293, complete genome 5480...................5498100
HQ437707.1 Hepatitis A virus strain HepA-293, complete genome 3228__.........________322047
HM769724.1 Hepatitis A virus isolate HAV-Arg/06, complete genome 5470...................5488100
HM769724.1 Hepatitis A virus isolate HAV-Arg/06, complete genome 3212__.........________320447
M14707.1HPA Hepatitis A virus (wild-type) RNA, complete genome 5471...................5489100
AB020567.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH1 5470.................._548794
AB020567.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH1 3212__.........________320447
AB020569.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH3 5471_..................548894
AB020569.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH3 3212__.........g.______320252
AB258387.1 Hepatitis A virus genomic RNA, complete genome, subgenotype IIIB, clo5452.........c.........547094
AB300205.1 Hepatitis A virus genomic RNA, complete genome, sub_strain: KRM238G595453.........t.........547194
AB279735.1 Hepatitis A virus genomic RNA, complete genome, isolate: HAJ85-1 5452.........t.........547094
AB425339.1 Hepatitis A virus genomic RNA, complete genome, sub_strain: KRM003G725452.........t.........547094
AY644676.1 Hepatitis A virus isolate CF53/Berne, complete genome 5416.........t.....t...543489
AY644676.1 Hepatitis A virus isolate CF53/Berne, complete genome 3164__.........________315647
AY644676.1 Hepatitis A virus isolate CF53/Berne, complete genome 4379_........._________438747
DQ991029.1 Hepatitis A virus isolate CP-IND, complete genome 5453.........t.....t...547189
FJ360730.1 Hepatitis A virus isolate IND-HAV-06F, complete genome 5452.........t.....t...547089
FJ360731.1 Hepatitis A virus isolate IND-HAV-07F, complete genome 5452.........t.....t...547089
FJ360733.1 Hepatitis A virus isolate IND-HAV-95F, complete genome 5452.........t.....t...547089
FJ360734.1 Hepatitis A virus isolate IND-HAV-99F, complete genome 5452.........t.....t...547089
AY644337.1 Hepatitis A virus strain HMH polyprotein gene, partial cds 5407.........t.....t.._542484
AJ299464.3 Hepatitis A virus polyprotein, genomic RNA, strain NOR-21 5374.........t.....t.._539184
AB279732.1 Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG04-90 5452.........t.....t.._546984
EU011791.1 Hepatitis A virus isolate PN-IND, complete genome 5416.........t.....t.._543384
FJ360735.1 Hepatitis A virus isolate IND-HAV-97F, complete genome 5452.........t.....t.._546984
FJ360732.1 Hepatitis A virus isolate IND-HAV-08F, complete genome 5452.........tg....t...547084
D00924.1SHVAGM27 Simian hepatitis A virus gene for polyprotein, complete cds 4375_........._________438347
AY644670.1 Hepatitis A virus strain SLF88, complete genome 3163__.........________315547
EU140838.1 Simian hepatitis A virus, complete genome 4375_........._________438347