../../tmp/servers/virsirnadb/1899392015
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi11961tccatcttagccctagtca19
D85516.1 Hepatitis C virus genomic RNA, complete cds 9444...................9462100
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 9508...................9526100
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 9508...................9526100
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 9508...................9526100
D89815.1 Hepatitis C virus genomic RNA, complete sequence 9457...................9475100
AF054247.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete9504...................9522100
AF054248.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete9504...................9522100
AF054249.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete9505...................9523100
AJ132997.1 Hepatitis C virus, complete genome, isolate HCV-AD78P1 9442...................9460100
AJ238799.1 Hepatitis C virus type 1b complete genome, isolate Con1 9514...................9532100
AF176573.1 Hepatitis C virus subtype 1b strain 274933RU, complete genome 9509...................9527100
AB016785.1 Hepatitis C virus genomic RNA, complete sequence 9447...................9465100
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 9569...................9587100
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 9562...................9580100
AF169005.1 Hepatitis C virus subtype 2a isolate NDM59, complete genome 9609...................9627100
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 9527...................9545100
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 9563...................9581100
AB049088.1 Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 9525...................9543100
AB049089.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT109480...................9498100
AB049090.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149480...................9498100
AB049091.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149456...................9474100
AB049095.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT169494...................9512100
AB049101.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT229507...................9525100
AF333324.1 Hepatitis C virus type 1b polyprotein mRNA, complete cds 9496...................9514100
AB047639.1 Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome 9587...................9605100
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 9568...................9586100
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 9587...................9605100
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 9550...................9568100
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 9600...................9618100
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 9592...................9610100
AF356827.1 Hepatitis C virus subtype 1b isolate HCV-S1, complete genome 9518...................9536100
AY045702.1 Hepatitis C virus isolate HCR6, complete genome 9520...................9538100
AF139594.2 Hepatitis C virus subtype 1b strain HCV-N, complete genome 9525...................9543100
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 9496...................9514100
AY460204.1 Hepatitis C virus from Shanghai, complete genome 9486...................9504100
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 9598...................9616100
D84263.2 Hepatitis C virus (isolate VN235) genomic RNA, complete genome 9524...................9542100
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 9510...................9528100
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 3016_...........t..c.__303173
D84265.2 Hepatitis C virus (isolate VN004) genomic RNA, complete genome 9531...................9549100
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 9496...................9514100
DQ071885.1 Hepatitis C virus subtype 1b polyprotein mRNA, complete cds 9514...................9532100
AJ851228.1 Hepatitis C virus gene for polyprotein, genomic RNA, isolate Equatori9455...................9473100
AB249644.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9468...................9486100
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 9508...................9526100
EF638081.1 Hepatitis C virus subtype 1b from Hubei, complete genome 9386...................9404100
EU363761.1 Recombinant Hepatitis C virus H77C/JFH1, complete genome 9575...................9593100
AB426117.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9468...................9486100
AB435162.2 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9530...................9548100
AM910652.2 Hepatitis C virus subtype 1g complete genome 9463...................9481100
EU857431.1 Hepatitis C virus subtype 1b isolate Whu, complete genome 9512...................9530100
AB442219.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9496...................9514100
AB442220.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9496...................9514100
AB442221.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9496...................9514100
AB442222.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9499...................9517100
FN435993.1 Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN9522...................9540100
AB520610.1 Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC9507...................9525100
GU133617.1 Hepatitis C virus subtype 1b, complete genome 9555...................9573100
FN666428.2 Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol9502...................9520100
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC9537...................9555100
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC3038_............______304963
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen9620...................9638100
AF009606.1 Hepatitis C virus subtype 1a polyprotein gene, complete cds 9555...................9573100
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 9603_..................962094
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 9583..............g....960194
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 9523____...............953778
DQ988078.1 Hepatitis C virus isolate Eg10 polyprotein gene, partial cds 1368__........t....t.._138373