VIRsiRNAdb

../../tmp/servers/virsirnadb/739392169
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi2173	1	`tctattggtaggagtgaac`	19
X07831.1	Simian rotavirus gene 11 DNA for 28 kd polypeptide (put. capsid layer	118	`...................`	136	100
K03385.1	RO111 UK bovine rotavirus RNA gene segment 11, complete cds	118	`...................`	136	100
M33607.1	ROH11AA Human rotavirus gene 11, complete cds	118	`...................`	136	100
M28347.1	ROTNS26 Simian rotavirus SA11 segment 11 nonstructural phosphoprotein	118	`...................`	136	100
U54772.1	HRU54772 Human rotavirus strain Mc323 NSP5 (11) mRNA, complete cds	118	`...................`	136	100
AF306493.1	Simian rotavirus autokinase NSP5 and NSP6 genes, complete cds	118	`...................`	136	100
AB008655.1	Human rotavirus A mRNA for NSP5, complete cds, strain: K8	118	`...................`	136	100
AB008656.1	Human rotavirus A mRNA for NSP5, complete cds, strain: AU-1	118	`...................`	136	100
AB008657.1	Human rotavirus A mRNA for NSP5, complete cds, strain: O264	118	`...................`	136	100
AB008658.1	Human rotavirus A mRNA for NSP5, complete cds, strain: M318	118	`...................`	136	100
AB008659.1	Human rotavirus A mRNA for NSP5, complete cds, strain: 512A	118	`...................`	136	100
AB008660.1	Human rotavirus A mRNA for NSP5, complete cds, strain: 512B	118	`...................`	136	100
AB008663.1	Human rotavirus A mRNA for NSP5, complete cds, strain: 470	118	`...................`	136	100
AB008664.1	Human rotavirus A mRNA for NSP5, complete cds, strain: 582	118	`...................`	136	100
AF373605.1	Human rotavirus A strain RMC100 NSP5 and NSP6 genes, complete cds	118	`...................`	136	100
AF508732.1	Human rotavirus A isolate NR1 nonstructural protein NSP5 and nonstruc	118	`...................`	136	100
AY622998.1	Lamb rotavirus NSP5 and NSP6 genes, complete cds	118	`...................`	136	100
AY601548.1	Human rotavirus A strain RMC83 nonstructural protein (NSP5) and nonst	118	`...................`	136	100
AY787651.1	Human rotavirus A strain TB-Chen NSp5 (NSp5) gene, complete cds	118	`...................`	136	100
AY769694.1	Human rotavirus A strain RMC/G66 nonstructural protein 5 (NSP5) and n	118	`...................`	136	100
AY803730.1	Human rotavirus A strain RMC437 nonstructural protein 5 (NSP5) and no	118	`...................`	136	100
AY841126.1	Human rotavirus A strain RMC61 nonstructural protein 5 (NSP5) and non	118	`...................`	136	100
DQ146648.1	Rotavirus A strain RVA/Human-wt/BEL/B4633/2003/G12P[8] NSP5 gene, com	118	`...................`	136	100
DQ146659.1	Rotavirus A strain RVA/Human-wt/BGD/Dhaka25/2002/G12P[8] NSP5 gene, c	118	`...................`	136	100
DQ146670.1	Rotavirus A strain RVA/Human-wt/BGD/Dhaka12/2003/G12P[6] NSP5 gene, c	118	`...................`	136	100
DQ146681.1	Rotavirus A strain RVA/Human/BGD/Matlab13/2003/G12P[6] NSP5 gene, com	118	`...................`	136	100
DQ146698.1	Rotavirus A strain RVA/Human-tc/PHL/L26/1987/G12P[4] NSP5 gene, compl	118	`...................`	136	100
DQ146706.1	Rotavirus A strain RVA/Human-tc/THA/T152/1998/G12P[9] NSP5 gene, comp	118	`...................`	136	100
DQ204739.1	Porcine rotavirus A strain RU172 nonstructural protein NSP5 (NSP5) ge	102	`...................`	120	100
DQ492679.1	Rotavirus A strain RVA/Human-wt/BGD/Dhaka16/2003/G1P[8] NSP5 gene, co	118	`...................`	136	100
DQ494399.1	Bovine rotavirus strain KJ44 nonstructural protein 5 (NSP5) gene, com	118	`...................`	136	100
DQ494400.1	Bovine rotavirus strain KJ75 nonstructural protein 5 (NSP5) gene, com	118	`...................`	136	100
DQ490544.1	Rotavirus A strain RVA/Human-wt/BGD/RV161/2000/G12P[6] NSP5 gene, com	118	`...................`	136	100
DQ490561.1	Rotavirus A strain RVA/Human-wt/BGD/RV176/2000/G12P[6] NSP5 gene, com	118	`...................`	136	100
DQ916134.1	Porcine rotavirus A strain CMP034 NSP5 and NSP6 genes, complete cds	118	`...................`	136	100
EF200579.1	Bovine rotavirus A strain RUBV3 NSP5 (NSP5) gene, complete cds	104	`...................`	122	100
EF200580.1	Bovine rotavirus A strain RUBV81 NSP5 (NSP5) gene, complete cds	102	`...................`	120	100
EF200581.1	Bovine rotavirus A strain RUBV51 NSP5 (NSP5) gene, complete cds	102	`...................`	120	100
EF200582.1	Bovine rotavirus A strain RUBV117 NSP5 (NSP5) gene, complete cds	116	`...................`	134	100
EF560712.1	Rotavirus A strain RVA/Human-wt/BGD/Dhaka6/2001/G11P[25] NSP5 gene, c	118	`...................`	136	100
EF554103.1	Rotavirus A strain RVA/Human-tc/AUS/MG6/1993/G6P[14] NSP5 gene, compl	118	`...................`	136	100
EF554114.1	Rotavirus A strain RVA/Human-wt/HUN/Hun5/1997/G6P[14] NSP5 gene, comp	118	`...................`	136	100
EF554125.1	Rotavirus A strain RVA/Human-wt/BEL/B10925/1997/G6P[14] NSP5 gene, co	118	`...................`	136	100
EF554136.1	Rotavirus A strain RVA/Human-tc/ITA/PA169/1988/G6P[14] NSP5 gene, com	118	`...................`	136	100
EF554147.1	Rotavirus A strain RVA/Human-wt/ITA/111-05-27/2005/G6P[14] NSP5 gene,	118	`...................`	136	100
EF554158.1	Rotavirus A strain RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] NSP5 gene, co	118	`...................`	136	100
EF590981.1	Human rotavirus A clone G11S-S22 NSP5 gene, complete cds	118	`...................`	136	100
EF590982.1	Human rotavirus A clone G11S-S33 NSP5 gene, complete cds	118	`...................`	136	100
EF590984.1	Human rotavirus A clone G11S-S56 NSP5 gene, complete cds	118	`...................`	136	100
EF590985.1	Human rotavirus A clone G11S-S79 NSP5 gene, complete cds	118	`...................`	136	100
EF590986.1	Human rotavirus A clone G11S-S111 NSP5 gene, complete cds	118	`...................`	136	100
EF590987.1	Human rotavirus A clone G11S-S125 NSP5 gene, complete cds	118	`...................`	136	100
EF590989.1	Human rotavirus A clone G11S-S142 NSP5 gene, complete cds	118	`...................`	136	100
EF590990.1	Human rotavirus A clone G11S-S143 NSP5 gene, complete cds	118	`...................`	136	100
EF590991.1	Human rotavirus A clone G11S-S160 NSP5 gene, complete cds	118	`...................`	136	100
EF672562.1	Rotavirus A strain RVA/Human-tc/IND/69M/1980/G8P4[10] non-structural	97	`...................`	115	100
EF672569.1	Rotavirus A strain RVA/Human-tc/GBR/A64/1987/G10P11[14] non-structura	97	`...................`	115	100
EF672569.1	Rotavirus A strain RVA/Human-tc/GBR/A64/1987/G10P11[14] non-structura	684	`...................`	702	100
EF672583.1	Rotavirus A strain RVA/Human-tc/USA/DS-1/1976/G2P1B[4] non-structural	97	`...................`	115	100
EF672597.1	Human rotavirus A strain L26 non-structural protein 5 and non-structu	97	`...................`	115	100
EF672604.1	Rotavirus A strain RVA/Human-tc/USA/P/1974/G3P1A[8] non-structural pr	97	`...................`	115	100
EF672611.1	Rotavirus A strain RVA/Human-tc/USA/Se584/1998/G6P[9] non-structural	97	`...................`	115	100
EF672618.1	Rotavirus A strain RVA/Human-tc/GBR/ST3/1975/G4P2A[6] non-structural	97	`...................`	115	100
EF672625.1	Rotavirus A strain RVA/Human-tc/USA/WI61/1983/G9P1A[8] non-structural	97	`...................`	115	100
EF990702.1	Rotavirus A strain RVA/Cow-tc/USA/WC3/1981/G6P[5] NSP5 gene, complete	117	`...................`	135	100
EF990713.1	Rotavirus A strain RVA/Human-wt/BEL/B3458/2003/G9P[8] NSP5 gene, comp	118	`...................`	136	100
EU200803.1	Human rotavirus A isolate N155 NSP5 gene, complete cds	118	`...................`	136	100
EU542726.1	Bovine rotavirus strain K5 NSP5 gene, complete cds	118	`...................`	136	100
EU542727.1	Bovine rotavirus strain K8 NSP5 gene, complete cds	118	`...................`	136	100
EU542728.1	Bovine rotavirus strain K33-2 NSP5 gene, complete cds	118	`...................`	136	100
EU542729.1	Bovine rotavirus strain K55 NSP5 gene, complete cds	118	`...................`	136	100
EU542730.1	Bovine rotavirus strain K158 NSP5 gene, complete cds	118	`...................`	136	100
EU542731.1	Bovine rotavirus strain K291 NSP5 gene, complete cds	118	`...................`	136	100
EU791926.1	Human rotavirus A strain CMH079/05 nonstructural protein (NSP5) and n	118	`...................`	136	100
EU682404.1	Bovine rotavirus G15P11 NSP5 gene, complete cds	104	`...................`	122	100
EU659853.1	Buffalo rotavirus A 10733 non-structural protein 5 (NSP5) gene, compl	118	`...................`	136	100
EU708900.1	Human rotavirus Ro1845 NSP5 protein (NSP5) gene, complete cds	99	`...................`	117	100
EU708911.1	Human rotavirus HCR3A NSP5 protein (NSP5) gene, complete cds	99	`...................`	117	100
EU708922.1	Canine rotavirus CU-1 NSP5 protein (NSP5) gene, complete cds	99	`...................`	117	100
EU708933.1	Canine rotavirus K9 NSP5 protein (NSP5) gene, complete cds	99	`...................`	117	100
EU708944.1	Canine rotavirus A79-10/G3P[3] NSP5 protein (NSP5) gene, complete cds	99	`...................`	117	100
FJ206045.1	Bovine rotavirus strain KJ9-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206046.1	Bovine rotavirus strain KJ11 NSP5 gene, complete cds	118	`...................`	136	100
FJ206050.1	Bovine rotavirus strain KJ13 NSP5 gene, complete cds	118	`...................`	136	100
FJ206052.1	Bovine rotavirus strain KJ16 NSP5 gene, complete cds	118	`...................`	136	100
FJ206054.1	Bovine rotavirus strain KJ19-2 NSP5 gene, complete cds	118	`...................`	136	100
FJ206056.1	Bovine rotavirus strain KJ20 NSP5 gene, complete cds	118	`...................`	136	100
FJ206059.1	Bovine rotavirus strain KJ25-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206060.1	Bovine rotavirus strain KJ28-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206061.1	Bovine rotavirus strain KJ34-2 NSP5 gene, complete cds	118	`...................`	136	100
FJ206063.1	Bovine rotavirus strain KJ36-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206065.1	Bovine rotavirus strain KJ38-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206067.1	Bovine rotavirus strain KJ39-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206069.1	Bovine rotavirus strain KJ40-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206071.1	Bovine rotavirus strain KJ45 NSP5 gene, complete cds	118	`...................`	136	100
FJ206074.1	Bovine rotavirus strain KJ56-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206076.1	Bovine rotavirus strain KJ58-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206078.1	Bovine rotavirus strain KJ59-2 NSP5 gene, complete cds	118	`...................`	136	100
FJ206081.1	Bovine rotavirus strain KJ69-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206083.1	Bovine rotavirus strain KJ78-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206086.1	Bovine rotavirus strain KJ98-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206089.1	Bovine rotavirus strain KJ118 NSP5 gene, complete cds	118	`...................`	136	100
FJ206090.1	Bovine rotavirus strain KJ142 NSP5 gene, complete cds	118	`...................`	136	100
FJ206091.1	Bovine rotavirus strain KJ147 NSP5 gene, complete cds	118	`...................`	136	100
FJ206092.1	Bovine rotavirus strain KJ152 NSP5 gene, complete cds	118	`...................`	136	100
FJ206093.1	Bovine rotavirus strain KJ172 NSP5 gene, complete cds	118	`...................`	136	100
FJ206094.1	Bovine rotavirus strain KJ212 NSP5 gene, complete cds	118	`...................`	136	100
FJ206096.1	Bovine rotavirus strain KJ245 NSP5 gene, complete cds	118	`...................`	136	100
FJ206097.1	Bovine rotavirus strain KJ246 NSP5 gene, complete cds	118	`...................`	136	100
FJ206098.1	Bovine rotavirus strain KJ321-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206099.1	Bovine rotavirus strain KJ330-1 NSP5 gene, complete cds	118	`...................`	136	100
FJ206100.1	Bovine rotavirus strain KJ338-1 NSP5 gene, complete cds	118	`...................`	136	100
EU753967.1	Human rotavirus G9P6 strain mcs/13-07 NSP5 protein gene, complete cds	118	`...................`	136	100
FJ183362.1	Human rotavirus G9P[6] strain GR 10924/99 NSP5 gene, complete cds	118	`...................`	136	100
EU839970.1	Human rotavirus G12 strain SK423 nonstructural protein (NSP5) gene, c	118	`...................`	136	100
EU839976.1	Human rotavirus G12 strain SK277 nonstructural protein (NSP5) gene, c	118	`...................`	136	100
FJ495136.1	Rotavirus A strain RVA/Antelope-wt/ZAF/RC-18-08/G6P[14] non-structura	118	`...................`	136	100
FJ422141.1	Rotavirus A strain RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] NSP5 gene, comp	118	`...................`	136	100
EU984102.1	Human rotavirus A strain 0613158-CA NSP5 (NSP5) gene, complete cds	118	`...................`	136	100
FJ031023.1	Lamb rotavirus strain Lamb-NT segment 11, complete sequence	118	`...................`	136	100
FJ347110.1	Rotavirus A strain RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] NSP5 gene,	118	`...................`	136	100
FJ347121.1	Rotavirus A strain RVA/Cow-wt/ARG/B383/1998/G15P[11] NSP5 gene, compl	118	`...................`	136	100
FJ347132.1	Rotavirus A strain RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] NSP5 gene	118	`...................`	136	100
FJ816617.1	Rotavirus A strain RVA/Rhesus-tc/USA/TUCH/2002/G3P[24] nonstructural	97	`...................`	115	100
FJ794016.1	Rotavirus A strain rj1527/98 non-structural protein 5 (NSP5) gene, co	118	`...................`	136	100
FJ794017.1	Rotavirus A strain rj1528/98 non-structural protein 5 (NSP5) gene, co	118	`...................`	136	100
FJ794018.1	Rotavirus A strain rj1538/98 non-structural protein 5 (NSP5) gene, co	118	`...................`	136	100
FJ794019.1	Rotavirus A strain rj1609/98 non-structural protein 5 (NSP5) gene, co	118	`...................`	136	100
FJ794020.1	Rotavirus A strain rj8224/04 non-structural protein 5 (NSP5) gene, co	118	`...................`	136	100
FJ794021.1	Rotavirus A strain rj11149/05 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794022.1	Rotavirus A strain rj11768/05 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794023.1	Rotavirus A strain rj11759/05 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794024.1	Rotavirus A strain rj11772/05 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794026.1	Rotavirus A strain ac11443/05 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794027.1	Rotavirus A strain ac11475/05 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794028.1	Rotavirus A strain ac11547/05 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794029.1	Rotavirus A strain ac11548/05 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794030.1	Rotavirus A strain ac11822/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794031.1	Rotavirus A strain ac11823/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794032.1	Rotavirus A strain ac11824/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794033.1	Rotavirus A strain rj12077/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794034.1	Rotavirus A strain rj12226/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794035.1	Rotavirus A strain es12588/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794036.1	Rotavirus A strain ro13270/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794037.1	Rotavirus A strain ba12537/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794038.1	Rotavirus A strain ba13255/06 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ794039.1	Rotavirus A strain ba13619/07 non-structural protein 5 (NSP5) gene, c	118	`...................`	136	100
FJ747624.1	Human rotavirus A strain GER126-08 NSP5 and NSP6 genes, complete cds	97	`...................`	115	100
FJ747635.1	Human rotavirus A strain GER172-08 NSP5 and NSP6 genes, complete cds	97	`...................`	115	100
GQ414550.1	Human rotavirus A strain GER1H-09 phosphoprotein (NSP5) and phosphopr	99	`...................`	117	100
GQ149100.1	Rotavirus A EC2184/ECU/G11P[6] segment 11 NSP5 (NSP5) gene, complete	97	`...................`	115	100
FJ947174.1	Rotavirus A human/Bethesda/DC1285/1980/G4P[8] segment 11 NSP5 (NSP5)	97	`...................`	115	100
FJ947185.1	Rotavirus A human/Bethesda/DC1563/1974/G3P[8] segment 11 NSP5 (NSP5)	97	`...................`	115	100
FJ947328.1	Rotavirus A human/Bethesda/DC1730/1979/G3P[8] segment 11 NSP5 (NSP5)	120	`...................`	138	100
FN665687.1	Rotavirus A NSP5 gene for non-structural protein NSP5, genomic RNA, s	118	`...................`	136	100
FN665698.1	Rotavirus A NSP5 gene for non-structural protein NSP5, genomic RNA, s	118	`...................`	136	100
GU827416.1	Rotavirus A strain RVA/Cat-wt/ITA/BA222/2005/G3P[9] NSP5 and NSP6 gen	118	`...................`	136	100
HM534682.1	Rotavirus A human/USA/2009727093/2009/G9P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
GU937876.1	Bovine rotavirus A strain NCDV NSP5 protein (NSP5) gene, complete cds	118	`...................`	136	100
GU937887.1	Caprine rotavirus A strain GO34 NSP5 protein (NSP5) gene, complete cd	118	`...................`	136	100
GU565051.1	Rotavirus A strain RVA/Vaccine/USA/RotaTeq-WI79-4/1992/G6P1A[8] NSP5	118	`...................`	136	100
GU565062.1	Rotavirus A strain RVA/Vaccine/USA/RotaTeq-WI79-9/1992/G1P7[5] NSP5 g	118	`...................`	136	100
GU565073.1	Rotavirus A strain RVA/Vaccine/USA/RotaTeq-SC2-9/1992/G2P7[5] NSP5 ge	118	`...................`	136	100
GU565084.1	Rotavirus A strain RVA/Vaccine/USA/RotaTeq-WI78-8/1992/G3P7[5] NSP5 g	118	`...................`	136	100
GU565095.1	Rotavirus A strain RVA/Vaccine/USA/RotaTeq-BrB-9/1996/G4P7[5] NSP5 ge	118	`...................`	136	100
HM773589.1	Rotavirus A human/USA/2009727032/2009/G9P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773600.1	Rotavirus A human/USA/2009727036/2009/G9P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773611.1	Rotavirus A human/USA/2009727098/2009/G9P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773622.1	Rotavirus A human/USA/2009727047/2009/G9P[8] segment 11 NSP5 (NSP5) a	101	`...................`	119	100
HM773633.1	Rotavirus A human/USA/2009727051/2009/G9P[8] segment 11 NSP5 (NSP5) a	101	`...................`	119	100
HM773644.1	Rotavirus A human/USA/2008747307/2008/G9P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773655.1	Rotavirus A human/USA/2008747500/2008/G3P[8] segment 11 NSP5 (NSP5) a	101	`...................`	119	100
HM773666.1	Rotavirus A human/USA/2008747369/2008/G3P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773677.1	Rotavirus A human/USA/2008747337/2008/G3P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773688.1	Rotavirus A human/USA/2008747336/2008/G3P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773699.1	Rotavirus A human/USA/2008747332/2008/G3P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773710.1	Rotavirus A human/USA/2008747329/2008/G3P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773721.1	Rotavirus A human/USA/2008747112/2008/G3P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773732.1	Rotavirus A human/USA/2009726997/2009/G3P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773743.1	Rotavirus A human/USA/2008747322/2008/G3P[8] segment 11 NSP5 (NSP5) a	101	`...................`	119	100
HM773754.1	Rotavirus A human/USA/2007719825/2007/G1P[8] segment 11 NSP5 (NSP5) a	101	`...................`	119	100
HM773765.1	Rotavirus A human/USA/2007719739/2007/G1P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773842.1	Rotavirus A human/USA/2007719945/2007/G1P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM773853.1	Rotavirus A human/USA/2007719907/2007/G1P[8] segment 11 NSP5 (NSP5) a	101	`...................`	119	100
HM773875.1	Rotavirus A human/Bethesda/DC1359/1980/G4P[8] segment 11 NSP5 (NSP5)	97	`...................`	115	100
HM773886.1	Rotavirus A human/Bethesda/DC2241/1977/G4P[8] segment 11 NSP5 (NSP5)	97	`...................`	115	100
HM773919.1	Rotavirus A human/Bethesda/DC4613/1980/G4P[8] segment 11 NSP5 (NSP5)	97	`...................`	115	100
HM773930.1	Rotavirus A human/Bethesda/DC4996/1977/G4P[8] segment 11 NSP5 (NSP5)	97	`...................`	115	100
HM773941.1	Rotavirus A human/Bethesda/DC5064/1977/G4P[8] segment 11 NSP5 (NSP5)	97	`...................`	115	100
HM773952.1	Rotavirus A human/Bethesda/DC5115/1977/G4P[8] segment 11 NSP5 (NSP5)	97	`...................`	115	100
HM773963.1	Rotavirus A human/Bethesda/DC827/1978/G4P[8] segment 11 NSP5 (NSP5) a	97	`...................`	115	100
HM363564.1	Bovine rotavirus isolate Bov/Ind/UKD/IVRI/09/M-1 segment 11 non-struc	110	`...................`	128	100
HM627563.1	Human rotavirus A strain B10 NSP5 protein (NSP5) gene, complete cds	118	`...................`	136	100
HQ665467.1	Rhesus rotavirus segment 11, complete sequence	118	`...................`	136	100
JF490086.1	Rotavirus A human/Victoria/CK00001/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490096.1	Rotavirus A human/Victoria/CK00002/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490141.1	Rotavirus A human/Victoria/CK00006/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490163.1	Rotavirus A human/Victoria/CK00008/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490174.1	Rotavirus A human/Victoria/CK00009/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490185.1	Rotavirus A human/Victoria/CK00011/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490196.1	Rotavirus A human/Victoria/CK00012/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490207.1	Rotavirus A human/Victoria/CK00014/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490218.1	Rotavirus A human/Victoria/CK00015/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490229.1	Rotavirus A human/Victoria/CK00016/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490240.1	Rotavirus A human/Victoria/CK00017/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490251.1	Rotavirus A human/Victoria/CK00018/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490261.1	Rotavirus A human/Victoria/CK00019/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490273.1	Rotavirus A human/Victoria/CK00020/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490284.1	Rotavirus A human/Victoria/CK00021/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490295.1	Rotavirus A human/Victoria/CK00022/2005/G1P[8] segment 11 non-structu	97	`...................`	115	100
JF490306.1	Rotavirus A human/Victoria/CK00023/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490315.1	Rotavirus A human/Victoria/CK00024/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490328.1	Rotavirus A human/Victoria/CK00026/2005/G1P[8] segment 11 non-structu	97	`...................`	115	100
JF490339.1	Rotavirus A human/Victoria/CK00027/2054/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490349.1	Rotavirus A human/Victoria/CK00028/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490361.1	Rotavirus A human/Victoria/CK00029/2006/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490416.1	Rotavirus A human/Victoria/CK00035/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490426.1	Rotavirus A human/Victoria/CK00036/2005/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490437.1	Rotavirus A human/Victoria/CK00037/2006/G1P[8] segment 11 non-structu	97	`...................`	115	100
JF490515.1	Rotavirus A human/Victoria/CK00047/2006/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490537.1	Rotavirus A human/Victoria/CK00049/2004/G1P[8] segment 11 non-structu	101	`...................`	119	100
JF490547.1	Rotavirus A human/Victoria/CK00050/2005/G1P[8] segment 11 non-structu	97	`...................`	115	100
JF421985.1	Human rotavirus A strain KF17 nonstructural protein (NSP5) gene, comp	118	`...................`	136	100
HQ650126.1	Rotavirus A RVA/Human-tc/USA/DS-1/1976/G2P[4] segment 11, complete se	118	`...................`	136	100
DQ205231.1	Rotavirus A strain RVA/Rabbit-tc/ITA/30-96/1996/G3P[14] NSP5 (NSP5) g	118	`.................._`	135	94
FJ361211.1	Rotavirus A strain 116E/AG segment 11 non-structural protein 5 (NSP5)	97	`.............a.....`	115	94
FJ794025.1	Rotavirus A strain rs11126/05 non-structural protein 5 (NSP5) gene, c	118	`.......a...........`	136	94
J04361.1	ROTVP11G Rabbit rotavirus VP11 gene (segment 11), complete cds	118	`.............a...._`	135	89
AY740731.1	Rotavirus A strain RVA/Human-wt/BEL/B4106/2000/G3P[14] NSP5 (NSP5) ge	118	`.............a...._`	135	89
X76779.1	Human rotavirus (v183) RNA for NSP5	118	`.............ac....`	136	89
U54773.1	HRU54773 Human rotavirus strain Mc345 rearranged NSP5 mRNA, complete c	118	`.............ac....`	136	89
U96698.1	HRU96698 Human rotavirus Z10262 non-structural protein NSP5 and non-st	118	`.............ac....`	136	89
U96698.1	HRU96698 Human rotavirus Z10262 non-structural protein NSP5 and non-st	690	`.............ac....`	708	89
AB022773.1	Human rotavirus A mRNA for NSP5, complete cds	118	`.............ac....`	136	89
AB035708.1	Human rotavirus A segment 11 genomic RNA for NSP5, complete cds	118	`.............ac....`	136	89
AB045217.1	Human rotavirus A RNA segment 11 for NSP5, complete cds, strain:96H00	118	`.............ac....`	136	89
AB045218.1	Human rotavirus A RNA segment 11 for NSP5, complete cds, sgtrain:96H0	118	`.............ac....`	136	89
AB045219.1	Human rotavirus A RNA segment 11 for NSP5, complete cds, strain:96H06	118	`.............ac....`	136	89
AB045220.1	Human rotavirus A RNA segment 11 for NSP5, complete cds, strain:96H07	118	`.............ac....`	136	89
AF306494.1	Human rotavirus autokinase NSP5 and NSP6 genes, complete cds	117	`.............ac....`	135	89
AF338244.1	Human rotavirus segment 11 NSP5 gene, complete cds	118	`.............ac....`	136	89
AF338245.1	Human rotavirus segment 11R NSP5 gene, complete cds	118	`.............ac....`	136	89
AF338245.1	Human rotavirus segment 11R NSP5 gene, complete cds	691	`.............ac....`	709	89
AB008661.1	Human rotavirus A mRNA for NSP5, complete cds, strain: KU	118	`.............ac....`	136	89
AB008662.1	Human rotavirus A mRNA for NSP5, complete cds, strain: 512C	118	`.............ac....`	136	89
AY033396.1	Human rotavirus A strain RMC321 NSP5 and NSP6 genes, complete cds	118	`.............ac....`	136	89
AY770974.1	Human rotavirus A strain RMC/G60 nonstructural protein NSP5 and nonst	118	`.............ac....`	136	89
AY769695.1	Human rotavirus A strain RMC/G7 nonstructural protein 5 (NSP5) and no	118	`.............ac....`	136	89
EF590980.1	Human rotavirus A clone G11S-S7 NSP5 gene, complete cds	118	`.............ac....`	136	89
EF590983.1	Human rotavirus A clone G11S-S35 NSP5 gene, complete cds	118	`.............ac....`	136	89
EF590988.1	Human rotavirus A clone G11S-S141 NSP5 gene, complete cds	118	`.............ac....`	136	89
EF672576.1	Rotavirus A strain RVA/Human-tc/USA/D/1974/G1P1A[8] non-structural pr	97	`.............ac....`	115	89
EF672590.1	Rotavirus A strain RVA/Human-tc/BRA/IAL28/1992/G5P[8] non-structural	97	`.............ac....`	115	89
FJ423123.1	Human rotavirus A strain Wa variant VirWa segment dsRNA 11, complete	118	`.............ac....`	136	89
FJ423134.1	Human rotavirus A strain Wa variant TC-ParWa segment dsRNA 11, comple	118	`.............ac....`	136	89
FJ423145.1	Human rotavirus A strain Wa variant Wag7/8re segment dsRNA 11, comple	118	`.............ac....`	136	89
FJ423155.1	Human rotavirus A strain Wa variant Wag5re segment dsRNA 11, complete	118	`.............ac....`	136	89
FJ947748.1	Rotavirus A human/Bethesda/DC140/1975/G3P[8] segment 11 NSP5 (NSP5) a	97	`.............ac....`	115	89
FJ947759.1	Rotavirus A human/Bethesda/DC168/1976/G3P[8] segment 11 NSP5 (NSP5) a	108	`.............ac....`	126	89
FJ947770.1	Rotavirus A human/Bethesda/DC792/1980/G3P[8] segment 11 NSP5 (NSP5) a	115	`.............ac....`	133	89
FJ947781.1	Rotavirus A human/Bethesda/DC1600/1980/G3P[8] segment 11 NSP5 (NSP5)	111	`.............ac....`	129	89
FJ947792.1	Rotavirus A human/Bethesda/DC5710/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947803.1	Rotavirus A human/Bethesda/DC5751/1991/G3P[8] segment 11 NSP5 (NSP5)	100	`.............ac....`	118	89
FJ947814.1	Rotavirus A human/Bethesda/DC2069/1976/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947825.1	Rotavirus A human/Bethesda/DC2081/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947836.1	Rotavirus A human/Bethesda/DC2102/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947847.1	Rotavirus A human/Bethesda/DC2106/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947858.1	Rotavirus A human/Bethesda/DC2212/1976/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947869.1	Rotavirus A human/Bethesda/DC2239/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947880.1	Rotavirus A human/Bethesda/DC2262/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947891.1	Rotavirus A human/Bethesda/DC2266/1976/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947902.1	Rotavirus A human/Bethesda/CH5455/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947913.1	Rotavirus A human/Bethesda/CH5470/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947924.1	Rotavirus A human/Bethesda/CH5483/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947935.1	Rotavirus A human/Bethesda/CH5498/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947946.1	Rotavirus A human/Bethesda/DC5553/1991/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947196.1	Rotavirus A human/Bethesda/DC1455/1975/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947207.1	Rotavirus A human/Bethesda/DC5142/1975/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947218.1	Rotavirus A human/Bethesda/DC23/1976/G3P[8] segment 11 NSP5 (NSP5) an	100	`.............ac....`	118	89
FJ947229.1	Rotavirus A human/Bethesda/DC139/1976/G3P[8] segment 11 NSP5 (NSP5) a	99	`.............ac....`	117	89
FJ947240.1	Rotavirus A human/Bethesda/DC129/1976/G3P[8] segment 11 NSP5 (NSP5) a	122	`.............ac....`	140	89
FJ947251.1	Rotavirus A human/Bethesda/DC130/1976/G3P[8] segment 11 NSP5 (NSP5) a	99	`.............ac....`	117	89
FJ947262.1	Rotavirus A human/Bethesda/DC131/1976/G3P[8] segment 11 NSP5 (NSP5) a	111	`.............ac....`	129	89
FJ947273.1	Rotavirus A human/Bethesda/DC133/1976/G3P[8] segment 11 NSP5 (NSP5) a	108	`.............ac....`	126	89
FJ947284.1	Rotavirus A human/Bethesda/DC1494/1976/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947295.1	Rotavirus A human/Bethesda/DC1496/1976/G3P[8] segment 11 NSP5 (NSP5)	100	`.............ac....`	118	89
FJ947306.1	Rotavirus A human/Bethesda/DC1898/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947317.1	Rotavirus A human/Bethesda/DC135/1979/G3P[8] segment 11 NSP5 (NSP5) a	125	`.............ac....`	143	89
FJ947339.1	Rotavirus A human/Bethesda/DC5728/1991/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947350.1	Rotavirus A human/Bethesda/DC1497/1976/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947361.1	Rotavirus A human/Bethesda/DC1505/1976/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947372.1	Rotavirus A human/Bethesda/DC4772/1976/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
FJ947383.1	Rotavirus A human/Bethesda/DC2109/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947394.1	Rotavirus A human/Bethesda/DC2114/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947405.1	Rotavirus A human/Bethesda/DC2119/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947416.1	Rotavirus A human/Bethesda/DC2171/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947427.1	Rotavirus A human/Bethesda/DC2238/1976/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947438.1	Rotavirus A human/Bethesda/CH5446/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947449.1	Rotavirus A human/Bethesda/CH5459/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947460.1	Rotavirus A human/Bethesda/CH5475/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947471.1	Rotavirus A human/Bethesda/CH5477/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947482.1	Rotavirus A human/Bethesda/CH5484/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947493.1	Rotavirus A human/Bethesda/CH5488/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947504.1	Rotavirus A human/Bethesda/DC5491/1991/G3P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
FJ947515.1	Rotavirus A human/Bethesda/DC5544/1991/G3P[8] segment 11 NSP5 (NSP5)	98	`.............ac....`	116	89
FJ947526.1	Rotavirus A human/Bethesda/DC5549/1991/G3P[8] segment 11 NSP5 (NSP5)	99	`.............ac....`	117	89
GU189559.1	Human rotavirus A strain R479 segment 11, complete sequence	118	`.............ac....`	136	89
HM773776.1	Rotavirus A human/USA/2007719698/2007/G1P[8] segment 11 NSP5 (NSP5) a	101	`.............ac....`	119	89
HM773787.1	Rotavirus A human/USA/2008747106/2008/G1P[8] segment 11 NSP5 (NSP5) a	97	`.............ac....`	115	89
HM773798.1	Rotavirus A human/USA/2008747100/2008/G1P[8] segment 11 NSP5 (NSP5) a	101	`.............ac....`	119	89
HM773809.1	Rotavirus A human/USA/2007744510/2007/G1P[8] segment 11 NSP5 (NSP5) a	101	`.............ac....`	119	89
HM773820.1	Rotavirus A human/USA/2007744509/2007/G1P[8] segment 11 NSP5 (NSP5) a	97	`.............ac....`	115	89
HM773831.1	Rotavirus A human/USA/2007744270/2007/G1P[8] segment 11 NSP5 (NSP5) a	101	`.............ac....`	119	89
HM773864.1	Rotavirus A human/Bethesda/DC1208/1980/G4P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
HM773897.1	Rotavirus A human/Bethesda/DC4320/1988/G4P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
HM773908.1	Rotavirus A human/Bethesda/DC4608/1980/G4P[8] segment 11 NSP5 (NSP5)	97	`.............ac....`	115	89
JF490108.1	Rotavirus A human/Victoria/CK00003/2004/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490119.1	Rotavirus A human/Victoria/CK00004/2004/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490130.1	Rotavirus A human/Victoria/CK00005/2004/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490152.1	Rotavirus A human/Victoria/CK00007/2004/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490372.1	Rotavirus A human/Victoria/CK00030/2006/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490383.1	Rotavirus A human/Victoria/CK00032/2006/G1P[8] segment 11 non-structu	97	`.............ac....`	115	89
JF490394.1	Rotavirus A human/Victoria/CK00033/2007/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490404.1	Rotavirus A human/Victoria/CK00034/2007/G1P[8] segment 11 non-structu	97	`.............ac....`	115	89
JF490449.1	Rotavirus A human/Victoria/CK00039/2006/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490460.1	Rotavirus A human/Victoria/CK00040/2006/G1P[8] segment 11 non-structu	97	`.............ac....`	115	89
JF490471.1	Rotavirus A human/Victoria/CK00041/2006/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490482.1	Rotavirus A human/Victoria/CK00043/2006/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490496.1	Rotavirus A human/Victoria/CK00045/2006/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
JF490504.1	Rotavirus A human/Victoria/CK00046/2006/G1P[8] segment 11 non-structu	97	`.............ac....`	115	89
JF490526.1	Rotavirus A human/Victoria/CK00048/2004/G1P[8] segment 11 non-structu	101	`.............ac....`	119	89
FJ947786.1	Rotavirus A human/Bethesda/DC5710/1991/G3P[8] segment 5 NSP1 (NSP1) g	598	`_.........a..a...__`	583	73
FJ947797.1	Rotavirus A human/Bethesda/DC5751/1991/G3P[8] segment 5 NSP1 (NSP1) g	604	`_.........a..a...__`	589	73
FJ947333.1	Rotavirus A human/Bethesda/DC5728/1991/G3P[8] segment 5 NSP1 (NSP1) g	604	`_.........a..a...__`	589	73
FJ947432.1	Rotavirus A human/Bethesda/CH5446/1991/G3P[8] segment 5 NSP1 (NSP1) g	598	`_.........a..a...__`	583	73
FJ947443.1	Rotavirus A human/Bethesda/CH5459/1991/G3P[8] segment 5 NSP1 (NSP1) g	598	`_.........a..a...__`	583	73
FJ947454.1	Rotavirus A human/Bethesda/CH5475/1991/G3P[8] segment 5 NSP1 (NSP1) g	598	`_.........a..a...__`	583	73
AY277921.1	Porcine rotavirus A VP3 gene, complete cds	1590	`...g.........a..___`	1575	73
EF560620.1	Rotavirus A strain RVA/Pig-tc/VEN/A131/1988/G3P9[7] VP3 gene, complet	1590	`...g.........a..___`	1575	73
EF560623.1	Rotavirus A strain RVA/Pig-tc/VEN/A253/1988/G11P9[7] VP3 gene, comple	1590	`...g.........a..___`	1575	73

VIRsiRNAdb

Database of Viral siRNA / shRNA