VIRsiRNAdb

../../tmp/servers/virsirnadb/1355054372
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1837	1	`ttactcgctgaagctggta`	19
M33854.1	CXA3CG Coxsackievirus B3 (CVB3) complete genome	6937	`...................`	6955	100
M16572.1	CXA3G Coxsackievirus B3, complete genome	6936	`...................`	6954	100
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	6938	`...................`	6956	100
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	6938	`...................`	6956	100
AF231764.1	Coxsackievirus B3 strain P, complete genome	6938	`...................`	6956	100
AF231765.1	Coxsackievirus B3 strain PD, complete genome	6938	`...................`	6956	100
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	6938	`...................`	6956	100
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	6938	`...................`	6956	100
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	6938	`...................`	6956	100
AF465518.1	Human echovirus 2 strain Cornelis, complete genome	6973	`...........g.......`	6991	94
AY302545.1	Human echovirus 2 strain Cornelis complete genome	6973	`...........g.......`	6991	94
AY302548.1	Human echovirus 24 strain DeCamp complete genome	6971	`...........g.......`	6989	94
AY302552.1	Human echovirus 29 strain JV-10 complete genome	6965	`...........g.......`	6983	94
AY302555.1	Human echovirus 32 strain PR-10 complete genome	6958	`...........g.......`	6976	94
X05690.1	Coxsackievirus B4 complete genome	6934	`_.g................`	6951	89
AY302553.1	Human echovirus 3 strain Morrisey complete genome	6967	`_....g.............`	6984	89
DQ480420.1	Human coxsackievirus B4 strain Tuscany, complete genome	6934	`_.g................`	6951	89
AF083069.1	Echovirus 5, complete genome	6971	`...........g..c....`	6989	89
AY186745.1	Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds	6909	`.....t...........c.`	6927	89
AY186746.1	Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds	6909	`.....t...........c.`	6927	89
AY186747.1	Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds	6909	`.....t...........c.`	6927	89
AY186748.1	Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds	6909	`.....t...........c.`	6927	89
AY302543.1	Human echovirus 17 strain CHHE-29 complete genome	6954	`...........g.....c.`	6972	89
AY302549.1	Human echovirus 25 strain JV-4 complete genome	6964	`..g..............c.`	6982	89
AY302550.1	Human echovirus 26 strain Coronel complete genome	6961	`..g..............c.`	6979	89
AY302551.1	Human echovirus 27 strain Bacon complete genome	6949	`..g..............c.`	6967	89
AY302554.1	Human echovirus 31 strain Caldwell complete genome	6970	`...........g.....c.`	6988	89
AY843298.1	Human enterovirus 80 strain USA/CA67-10387, complete genome	6966	`...........g..c....`	6984	89
AY843302.1	Human enterovirus 77 strain USA/TX97-10394, complete genome	6960	`.....t...........a.`	6978	89
DQ246620.1	Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome	6966	`..g..t.............`	6984	89
X84981.1	Echovirus 9 (strain Hill), complete genome	6960	`_.g..t.............`	6977	84
X79047.1	Echovirus type 12, prototype Travis wild type genome	6962	`_....t...........g.`	6979	84
X77708.1	Echovirus type 12, prototype Travis complete RNA genome	6962	`_....t...........g.`	6979	84
AF317694.1	Human echovirus 18 strain Metcalf polyprotein gene, complete cds	6949	`_.g..t.............`	6966	84
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	6945	`_.g..t.............`	6962	84
EU147493.1	Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds	6932	`_.g..t.............`	6949	84
EU144042.1	Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c	6939	`_.g..a.............`	6956	84
D00627.1	CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G	6987	`..g..t...........c.`	7005	84
U57056.1	CXU57056 Coxsackievirus B3 Woodruff variant, complete genome	6938	`..g..t...........c.`	6956	84
AF114383.1	Coxsackievirus B5 strain Faulkner, complete genome	6938	`..g..t...........c.`	6956	84
AY302547.1	Human echovirus 21 strain Farina complete genome	6964	`..g..t...........c.`	6982	84
FJ357838.1	Human coxsackievirus B3 strain GZ803, complete genome	6944	`____.a.............`	6958	73
GU109481.1	Human coxsackievirus B3 strain SSM-CVB3, complete genome	6939	`____.g.............`	6953	73
AY036578.1	Human echovirus 7 strain UMMC polyprotein gene, complete cds	6965	`_.g..t...........c.`	6982	78
AJ276224.1	Human echovirus 11 genomic RNA for polyprotein	6969	`_.g..t...........a.`	6986	78
AY556070.1	Enterovirus 75 strain USA/OK85-10362, complete genome	6968	`_.g..a...........c.`	6985	78
AY421762.1	Human coxsackievirus A4 strain High Point, complete genome	2385	`..t.a...........___`	2400	73
AY896762.1	Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein	6922	`____.g...........g.`	6936	68
AB426611.1	Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227	6954	`____.a...........c.`	6968	68
AY843308.1	Human enterovirus 101 strain CIV03-10361, complete genome	3635	`..........c..______`	3647	63
DQ341354.1	Human enterovirus 71 isolate 3799-SIN-98, complete genome	963	`_____..........t.._`	975	63
DQ341362.1	Human enterovirus 71 isolate SB12736-SAR-03, complete genome	963	`_____..........t.._`	975	63
DQ341363.1	Human enterovirus 71 isolate S19841-SAR-03, complete genome	963	`_____..........t.._`	975	63
DQ341364.1	Human enterovirus 71 isolate 5511-SIN-00, complete genome	963	`_____..........t.._`	975	63
DQ341366.1	Human enterovirus 71 isolate SB2864-SAR-00, complete genome	962	`_____..........t.._`	974	63
DQ341368.1	Human enterovirus 71 isolate MY104-9-SAR-97, complete genome	962	`_____..........t.._`	974	63
AM396586.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	962	`_____..........t.._`	974	63
AM396587.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P	962	`_____..........t.._`	974	63
EF373575.1	Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet	964	`_____..........t.._`	976	63
EU364841.1	Human enterovirus 71 strain 26M/AUS/4/99, complete genome	963	`_____..........t.._`	975	63
EU376004.1	Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome	963	`_____..........t.._`	975	63
EU376005.1	Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome	963	`_____..........t.._`	975	63
AB469182.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E	961	`_____..........t.._`	973	63
AB469183.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71	1696	`_____..........t.._`	1708	63
AB550334.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o	961	`_____..........t.._`	973	63
AB550335.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L	961	`_____..........t.._`	973	63
AB550336.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o	963	`_____..........t.._`	975	63
AB550337.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L	963	`_____..........t.._`	975	63
AB575927.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113	898	`_____..........t.._`	910	63
AB575928.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115	899	`_____..........t.._`	911	63
AF499637.1	Human coxsackievirus A13 strain Flores, complete genome	2039	`_______..........._`	2029	57
AF465511.1	Human coxsackievirus A13 strain Flores, complete genome	2039	`_______..........._`	2029	57

VIRsiRNAdb

Database of Viral siRNA / shRNA