../../tmp/servers/virsirnadb/1355054372
Result for your query siRNA sequence
RED | =100 % Complementary sequence |
. | =Identical residue |
blue alphabets | =mismatch |
_ | =Gap |
Acc number | Strain name | Start | Alignment | End | % Identity |
Query | virsi1837 | 1 | ttactcgctgaagctggta | 19 | |
M33854.1 | CXA3CG Coxsackievirus B3 (CVB3) complete genome | 6937 | ................... | 6955 | 100 |
M16572.1 | CXA3G Coxsackievirus B3, complete genome | 6936 | ................... | 6954 | 100 |
M88483.1 | CXAB3CG Coxsackievirus B3 mRNA, complete genome | 6938 | ................... | 6956 | 100 |
AF231763.1 | Coxsackievirus B3 strain 31-1-93, complete genome | 6938 | ................... | 6956 | 100 |
AF231764.1 | Coxsackievirus B3 strain P, complete genome | 6938 | ................... | 6956 | 100 |
AF231765.1 | Coxsackievirus B3 strain PD, complete genome | 6938 | ................... | 6956 | 100 |
AY752945.1 | Human coxsackievirus B3 strain 0, complete genome | 6938 | ................... | 6956 | 100 |
AY752946.1 | Human coxsackievirus B3 strain 20, complete genome | 6938 | ................... | 6956 | 100 |
AY752944.2 | Human coxsackievirus B3 strain 28, complete genome | 6938 | ................... | 6956 | 100 |
AF465518.1 | Human echovirus 2 strain Cornelis, complete genome | 6973 | ...........g....... | 6991 | 94 |
AY302545.1 | Human echovirus 2 strain Cornelis complete genome | 6973 | ...........g....... | 6991 | 94 |
AY302548.1 | Human echovirus 24 strain DeCamp complete genome | 6971 | ...........g....... | 6989 | 94 |
AY302552.1 | Human echovirus 29 strain JV-10 complete genome | 6965 | ...........g....... | 6983 | 94 |
AY302555.1 | Human echovirus 32 strain PR-10 complete genome | 6958 | ...........g....... | 6976 | 94 |
X05690.1 | Coxsackievirus B4 complete genome | 6934 | _.g................ | 6951 | 89 |
AY302553.1 | Human echovirus 3 strain Morrisey complete genome | 6967 | _....g............. | 6984 | 89 |
DQ480420.1 | Human coxsackievirus B4 strain Tuscany, complete genome | 6934 | _.g................ | 6951 | 89 |
AF083069.1 | Echovirus 5, complete genome | 6971 | ...........g..c.... | 6989 | 89 |
AY186745.1 | Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds | 6909 | .....t...........c. | 6927 | 89 |
AY186746.1 | Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds | 6909 | .....t...........c. | 6927 | 89 |
AY186747.1 | Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds | 6909 | .....t...........c. | 6927 | 89 |
AY186748.1 | Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds | 6909 | .....t...........c. | 6927 | 89 |
AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 6954 | ...........g.....c. | 6972 | 89 |
AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 6964 | ..g..............c. | 6982 | 89 |
AY302550.1 | Human echovirus 26 strain Coronel complete genome | 6961 | ..g..............c. | 6979 | 89 |
AY302551.1 | Human echovirus 27 strain Bacon complete genome | 6949 | ..g..............c. | 6967 | 89 |
AY302554.1 | Human echovirus 31 strain Caldwell complete genome | 6970 | ...........g.....c. | 6988 | 89 |
AY843298.1 | Human enterovirus 80 strain USA/CA67-10387, complete genome | 6966 | ...........g..c.... | 6984 | 89 |
AY843302.1 | Human enterovirus 77 strain USA/TX97-10394, complete genome | 6960 | .....t...........a. | 6978 | 89 |
DQ246620.1 | Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome | 6966 | ..g..t............. | 6984 | 89 |
X84981.1 | Echovirus 9 (strain Hill), complete genome | 6960 | _.g..t............. | 6977 | 84 |
X79047.1 | Echovirus type 12, prototype Travis wild type genome | 6962 | _....t...........g. | 6979 | 84 |
X77708.1 | Echovirus type 12, prototype Travis complete RNA genome | 6962 | _....t...........g. | 6979 | 84 |
AF317694.1 | Human echovirus 18 strain Metcalf polyprotein gene, complete cds | 6949 | _.g..t............. | 6966 | 84 |
EF174469.1 | Human coxsackievirus B2 isolate KOR 04-279, complete genome | 6945 | _.g..t............. | 6962 | 84 |
EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 6932 | _.g..t............. | 6949 | 84 |
EU144042.1 | Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c | 6939 | _.g..a............. | 6956 | 84 |
D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 6987 | ..g..t...........c. | 7005 | 84 |
U57056.1 | CXU57056 Coxsackievirus B3 Woodruff variant, complete genome | 6938 | ..g..t...........c. | 6956 | 84 |
AF114383.1 | Coxsackievirus B5 strain Faulkner, complete genome | 6938 | ..g..t...........c. | 6956 | 84 |
AY302547.1 | Human echovirus 21 strain Farina complete genome | 6964 | ..g..t...........c. | 6982 | 84 |
FJ357838.1 | Human coxsackievirus B3 strain GZ803, complete genome | 6944 | ____.a............. | 6958 | 73 |
GU109481.1 | Human coxsackievirus B3 strain SSM-CVB3, complete genome | 6939 | ____.g............. | 6953 | 73 |
AY036578.1 | Human echovirus 7 strain UMMC polyprotein gene, complete cds | 6965 | _.g..t...........c. | 6982 | 78 |
AJ276224.1 | Human echovirus 11 genomic RNA for polyprotein | 6969 | _.g..t...........a. | 6986 | 78 |
AY556070.1 | Enterovirus 75 strain USA/OK85-10362, complete genome | 6968 | _.g..a...........c. | 6985 | 78 |
AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 2385 | ..t.a...........___ | 2400 | 73 |
AY896762.1 | Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein | 6922 | ____.g...........g. | 6936 | 68 |
AB426611.1 | Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 | 6954 | ____.a...........c. | 6968 | 68 |
AY843308.1 | Human enterovirus 101 strain CIV03-10361, complete genome | 3635 | ..........c..______ | 3647 | 63 |
DQ341354.1 | Human enterovirus 71 isolate 3799-SIN-98, complete genome | 963 | _____..........t.._ | 975 | 63 |
DQ341362.1 | Human enterovirus 71 isolate SB12736-SAR-03, complete genome | 963 | _____..........t.._ | 975 | 63 |
DQ341363.1 | Human enterovirus 71 isolate S19841-SAR-03, complete genome | 963 | _____..........t.._ | 975 | 63 |
DQ341364.1 | Human enterovirus 71 isolate 5511-SIN-00, complete genome | 963 | _____..........t.._ | 975 | 63 |
DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 962 | _____..........t.._ | 974 | 63 |
DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 962 | _____..........t.._ | 974 | 63 |
AM396586.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 962 | _____..........t.._ | 974 | 63 |
AM396587.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P | 962 | _____..........t.._ | 974 | 63 |
EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 964 | _____..........t.._ | 976 | 63 |
EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 963 | _____..........t.._ | 975 | 63 |
EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 963 | _____..........t.._ | 975 | 63 |
EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 963 | _____..........t.._ | 975 | 63 |
AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 961 | _____..........t.._ | 973 | 63 |
AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 1696 | _____..........t.._ | 1708 | 63 |
AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 961 | _____..........t.._ | 973 | 63 |
AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 961 | _____..........t.._ | 973 | 63 |
AB550336.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o | 963 | _____..........t.._ | 975 | 63 |
AB550337.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L | 963 | _____..........t.._ | 975 | 63 |
AB575927.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113 | 898 | _____..........t.._ | 910 | 63 |
AB575928.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115 | 899 | _____..........t.._ | 911 | 63 |
AF499637.1 | Human coxsackievirus A13 strain Flores, complete genome | 2039 | _______..........._ | 2029 | 57 |
AF465511.1 | Human coxsackievirus A13 strain Flores, complete genome | 2039 | _______..........._ | 2029 | 57 |