VIRsiRNAdb

Browse BY

• Family of Virus


• Virus Name


• Gene Name


• Pubmed Id


• VsiRNAid

Total number of Results for 3\'UTR(S) are 11
Results from 0 - 25

siRNA sequence "guggcuccaucuuagcccu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "guggcuccaucuuagcccu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1192 " record
Length: 19
GC Content:58 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48

Offtargets for "guggcuccaucuuagcccu" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "agguccgugagccgcuuga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "agguccgugagccgcuuga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1208 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "agguccgugagccgcuuga" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "gcuccaucuuagcccuagu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gcuccaucuuagcccuagu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1194 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48

Offtargets for "gcuccaucuuagcccuagu" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "uagucacggcuagcuguga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uagucacggcuagcuguga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1198 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "uagucacggcuagcuguga" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "agucacggcuagcugugaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "agucacggcuagcugugaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1200 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "agucacggcuagcugugaa" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "uccaucuuagcccuaguca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uccaucuuagcccuaguca" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1196 " record
Length: 19
GC Content:47 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48

Offtargets for "uccaucuuagcccuaguca" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "gugaaagguccgugagccg" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gugaaagguccgugagccg" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1202 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "gugaaagguccgugagccg" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "aaagguccgugagccgcuu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaagguccgugagccgcuu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1206 " record
Length: 19
GC Content:58 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "aaagguccgugagccgcuu" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "ugaaagguccgugagccgc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ugaaagguccgugagccgc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1204 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "ugaaagguccgugagccgc" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "ugacugcagagagugcuga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ugacugcagagagugcuga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1210 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "ugacugcagagagugcuga" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "acugcagagagugcugaua" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "acugcagagagugcugaua" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1212 " record
Length: 19
GC Content:47 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "acugcagagagugcugaua" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1192	guggcuccaucuuagcccu	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	90	17305886	Blast SL	refseqs
virsi1208	agguccgugagccgcuuga	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	83	17305886	Blast SL	refseqs
virsi1194	gcuccaucuuagcccuagu	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	81	17305886	Blast SL	refseqs
virsi1198	uagucacggcuagcuguga	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	75	17305886	Blast SL	refseqs
virsi1200	agucacggcuagcugugaa	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	68	17305886	Blast SL	refseqs
virsi1196	uccaucuuagcccuaguca	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	62	17305886	Blast SL	refseqs
virsi1202	gugaaagguccgugagccg	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	60	17305886	Blast SL	refseqs
virsi1206	aaagguccgugagccgcuu	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	47	17305886	Blast SL	refseqs
virsi1204	ugaaagguccgugagccgc	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	16	17305886	Blast SL	refseqs
virsi1210	ugacugcagagagugcuga	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	10	17305886	Blast SL	refseqs
virsi1212	acugcagagagugcugaua	Hepatitis C Virus [HCV]	3'UTR(S)	Huh-7	Protein	5	17305886	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm