VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
BKRF3
are
2
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1887
ggcuagauuuccuacaacu
Epstein-Barr Virus [EBV]
BKRF3
NA (NPC-TW01)
DNA
20
17108049
Blast
SL
refseqs
     
siRNA sequence "
ggcuagauuuccuacaacu
" alignment with "
Epstein-Barr Virus [EBV]
" virus reference Genome sequences
siRNA sequence matching with "
ggcuagauuuccuacaacu
"
Epstein-Barr Virus [EBV]
" Virus reference Genome sequences
Browse all the records for "
Epstein-Barr Virus [EBV]
" virus
Browse "
virsi1887
" record
Length:
19
GC Content:
42 %
Starting position:
110453
Strain of Virus:
B95-8
GenBank Acc:
V01555
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
ggcuagauuuccuacaacu
" siRNA in Human Genome sequences
See
V01555
at Genbank
Pubmed:
17108049
Article:
Characterization of the uracil-DNA glycosylase activity of Epstein-Barr virus BKRF3 and its role in lytic viral DNA replication.
Authors:
Lu CC, Huang HT, Wang JT, Slupphaug G, Li TK, Wu MC, Chen YC, Lee CP, Chen MR.
Journal:
J Virol. 2007 Feb;81(3):1195-208. Epub 2006 Nov 15.
Entrez:
17108049
virsi1886
ggaagaggaaacaggagau
Epstein-Barr Virus [EBV]
BKRF3
NA (NPC-TW01)
DNA
10
17108049
Blast
SL
refseqs
     
siRNA sequence "
ggaagaggaaacaggagau
" alignment with "
Epstein-Barr Virus [EBV]
" virus reference Genome sequences
siRNA sequence matching with "
ggaagaggaaacaggagau
"
Epstein-Barr Virus [EBV]
" Virus reference Genome sequences
Browse all the records for "
Epstein-Barr Virus [EBV]
" virus
Browse "
virsi1886
" record
Length:
19
GC Content:
47 %
Starting position:
110396
Strain of Virus:
B95-8
GenBank Acc:
V01555
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
ggaagaggaaacaggagau
" siRNA in Human Genome sequences
See
V01555
at Genbank
Pubmed:
17108049
Article:
Characterization of the uracil-DNA glycosylase activity of Epstein-Barr virus BKRF3 and its role in lytic viral DNA replication.
Authors:
Lu CC, Huang HT, Wang JT, Slupphaug G, Li TK, Wu MC, Chen YC, Lee CP, Chen MR.
Journal:
J Virol. 2007 Feb;81(3):1195-208. Epub 2006 Nov 15.
Entrez:
17108049
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm