VIRsiRNAdb

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Family of Virus

Virus Name

Gene Name

Pubmed Id

VsiRNAid

Total number of Results for

Results from

0 - 25

siRNA sequence "cugguucggcuguacaugg" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "cugguucggcuguacaugg" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1399 " record
Length: 21
GC Content:52 %
GenBank Acc: AY587299
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "cugguucggcuguacaugg" siRNA in Human Genome sequences

See AY587299 at Genbank

Pubmed:16960393
Article:RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:16960393

siRNA sequence "uccagcuugugaauaccaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "uccagcuugugaauaccaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1402 " record
Length: 21
GC Content:38 %
GenBank Acc: AY587299
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uccagcuugugaauaccaa" siRNA in Human Genome sequences

See AY587299 at Genbank

siRNA sequence "cauuguggacgugcaguac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "cauuguggacgugcaguac" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1179 " record
Length: 19
GC Content:53 %
Starting position: 2426
Strain of Virus: Genotype 1a
Incubation Time (Hours):72

Offtargets for "cauuguggacgugcaguac" siRNA in Human Genome sequences

See at Genbank

Pubmed:15977238
Article:Small interfering RNA effectively inhibits protein expression and negative strand RNA synthesis from a full-length hepatitis C virus clone.
Authors:Prabhu R, Vittal P, Yin Q, Flemington E, Garry R, Robichaux WH, Dash S.
Journal:J Med Virol. 2005 Aug;76(4):511-9.
Entrez:15977238

siRNA sequence "aaggcacaugguaucgacccu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "aaggcacaugguaucgacccu" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2136 " record
Length: 21
GC Content:52 %
Starting position: 7284
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aaggcacaugguaucgacccu" siRNA in Human Genome sequences

See AJ238799 at Genbank

Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "gguuaggauguaugugggg" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gguuaggauguaugugggg" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1396 " record
Length: 21
GC Content:48 %
GenBank Acc: AY587299
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gguuaggauguaugugggg" siRNA in Human Genome sequences

See AY587299 at Genbank

siRNA sequence "ugagacagacgugaugcuc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ugagacagacgugaugcuc" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1398 " record
Length: 21
GC Content:48 %
GenBank Acc: AY587299
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ugagacagacgugaugcuc" siRNA in Human Genome sequences

See AY587299 at Genbank

siRNA sequence "auugcaaugacucccucca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "auugcaaugacucccucca" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1400 " record
Length: 21
GC Content:43 %
GenBank Acc: AY587299
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "auugcaaugacucccucca" siRNA in Human Genome sequences

See AY587299 at Genbank

VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With
virsi1399	cugguucggcuguacaugg	Hepatitis C Virus [HCV]	E2	HEK 293T	Protein	High	16960393	Blast SL	refseqs
virsi1402	uccagcuugugaauaccaa	Hepatitis C Virus [HCV]	E2	HEK 293T	Protein	High	16960393	Blast SL	refseqs
virsi1179	cauuguggacgugcaguac	Hepatitis C Virus [HCV]	E2	Huh-7	RNA	85	15977238	Blast SL	refseqs
virsi2136	aaggcacaugguaucgacccu	Hepatitis C Virus [HCV]	E2	Huh-7	RNA	55	16979254	Blast SL	refseqs
virsi1396	gguuaggauguaugugggg	Hepatitis C Virus [HCV]	E2	HEK 293T	Protein	0	16960393	Blast SL	refseqs
virsi1398	ugagacagacgugaugcuc	Hepatitis C Virus [HCV]	E2	HEK 293T	Protein	0	16960393	Blast SL	refseqs
virsi1400	auugcaaugacucccucca	Hepatitis C Virus [HCV]	E2	HEK 293T	Protein	0	16960393	Blast SL	refseqs

: siRNA seedlocator algorithm

VIRsiRNAdb

Database of Viral siRNA / shRNA

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