VIRsiRNAdb

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• Virus Name


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• VsiRNAid

Total number of Results for NS5B(AS) are 4
Results from 0 - 25

siRNA sequence "ggagaugaaggcgaaggcguc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ggagaugaaggcgaaggcguc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1219 " record
Length: 21
GC Content:62 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "ggagaugaaggcgaaggcguc" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "gacacugagacaccaauugac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gacacugagacaccaauugac" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1221 " record
Length: 21
GC Content:48 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "gacacugagacaccaauugac" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "ggucaccuuugacagacug" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ggucaccuuugacagacug" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1217 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "ggucaccuuugacagacug" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "ggucaccuuugacagacug" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ggucaccuuugacagacug" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1216 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "ggucaccuuugacagacug" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1219	ggagaugaaggcgaaggcguc	Hepatitis C Virus [HCV]	NS5B(AS)	Huh-7	Protein	71	17305886	Blast SL	refseqs
virsi1221	gacacugagacaccaauugac	Hepatitis C Virus [HCV]	NS5B(AS)	Huh-7	Protein	57	17305886	Blast SL	refseqs
virsi1217	ggucaccuuugacagacug	Hepatitis C Virus [HCV]	NS5B(AS)	Huh-7	Protein	52	17305886	Blast SL	refseqs
virsi1216	ggucaccuuugacagacug	Hepatitis C Virus [HCV]	NS5B(AS)	Huh-7	Protein	30	17305886	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm