VIRsiRNAdb

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• VsiRNAid

Total number of Results for Rev are 3
Results from 0 - 25

siRNA sequence "aauuaggacacuaaugcua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "aauuaggacacuaaugcua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1838 " record
Length: 19
GC Content:32 %
Starting position: 6825
Strain of Virus: B3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aauuaggacacuaaugcua" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:17112603
Article:Strand-specific silencing of a picornavirus by RNA interference: evidence for the superiority of plus-strand specific siRNAs.
Authors:Schubert S, Rothe D, Werk D, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Antiviral Res. 2007 Mar;73(3):197-205. Epub 2006 Nov 2.
Entrez:17112603

siRNA sequence "uuacucgcugaagcuggua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "uuacucgcugaagcuggua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1837 " record
Length: 19
GC Content:47 %
Starting position: 6937
Strain of Virus: B3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uuacucgcugaagcuggua" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:17112603
Article:Strand-specific silencing of a picornavirus by RNA interference: evidence for the superiority of plus-strand specific siRNAs.
Authors:Schubert S, Rothe D, Werk D, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Antiviral Res. 2007 Mar;73(3):197-205. Epub 2006 Nov 2.
Entrez:17112603

siRNA sequence "ucucauagcauuugauuac" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ucucauagcauuugauuac" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1836 " record
Length: 19
GC Content:32 %
Starting position: 6594
Strain of Virus: B3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ucucauagcauuugauuac" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:17112603
Article:Strand-specific silencing of a picornavirus by RNA interference: evidence for the superiority of plus-strand specific siRNAs.
Authors:Schubert S, Rothe D, Werk D, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Antiviral Res. 2007 Mar;73(3):197-205. Epub 2006 Nov 2.
Entrez:17112603


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1838	aauuaggacacuaaugcua	Human Coxsackievirus [CV]	Rev	COS-7	Protein	71	17112603	Blast SL	refseqs
virsi1837	uuacucgcugaagcuggua	Human Coxsackievirus [CV]	Rev	COS-7	Protein	59	17112603	Blast SL	refseqs
virsi1836	ucucauagcauuugauuac	Human Coxsackievirus [CV]	Rev	COS-7	Protein	17	17112603	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm