VIRsiRNAdb

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Total number of Results for 12955072 are 2
Results from 0 - 25

siRNA sequence "uacaacaaaccguugugug" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "uacaacaaaccguugugug" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1703 " record
Length: 19
GC Content:42 %
Starting position: 377
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48

Offtargets for "uacaacaaaccguugugug" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:12955072
Article:siRNA targeting of the viral E6 oncogene efficiently kills human papillomavirus-positive cancer cells.
Authors:Butz K, Ristriani T, Hengstermann A, Denk C, Scheffner M, Hoppe-Seyler F.
Journal:Oncogene. 2003 Sep 4;22(38):5938-45.
Entrez:12955072

siRNA sequence "cuaacuaacacuggguuau" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "cuaacuaacacuggguuau" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1702 " record
Length: 19
GC Content:37 %
Starting position: 381
Strain of Virus: HPV18
GenBank Acc: NC_001357
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48

Offtargets for "cuaacuaacacuggguuau" siRNA in Human Genome sequences
See NC_001357 at Genbank
Pubmed:12955072
Article:siRNA targeting of the viral E6 oncogene efficiently kills human papillomavirus-positive cancer cells.
Authors:Butz K, Ristriani T, Hengstermann A, Denk C, Scheffner M, Hoppe-Seyler F.
Journal:Oncogene. 2003 Sep 4;22(38):5938-45.
Entrez:12955072


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1703	uacaacaaaccguugugug	Human Papillomavirus [HPV]	E6	HeLa	mRNA	High	12955072	Blast SL	refseqs
virsi1702	cuaacuaacacuggguuau	Human Papillomavirus [HPV]	E6	HeLa	mRNA	75	12955072	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm