VIRsiRNAdb

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Total number of Results for 17108049 are 2
Results from 0 - 25

siRNA sequence "ggcuagauuuccuacaacu" alignment with "Epstein-Barr Virus [EBV]" virus reference Genome sequences
siRNA sequence matching with "ggcuagauuuccuacaacu" Epstein-Barr Virus [EBV]" Virus reference Genome sequences
Browse all the records for "Epstein-Barr Virus [EBV]" virus
Browse "virsi1887 " record
Length: 19
GC Content:42 %
Starting position: 110453
Strain of Virus: B95-8
GenBank Acc: V01555
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggcuagauuuccuacaacu" siRNA in Human Genome sequences
See V01555 at Genbank
Pubmed:17108049
Article:Characterization of the uracil-DNA glycosylase activity of Epstein-Barr virus BKRF3 and its role in lytic viral DNA replication.
Authors:Lu CC, Huang HT, Wang JT, Slupphaug G, Li TK, Wu MC, Chen YC, Lee CP, Chen MR.
Journal:J Virol. 2007 Feb;81(3):1195-208. Epub 2006 Nov 15.
Entrez:17108049

siRNA sequence "ggaagaggaaacaggagau" alignment with "Epstein-Barr Virus [EBV]" virus reference Genome sequences
siRNA sequence matching with "ggaagaggaaacaggagau" Epstein-Barr Virus [EBV]" Virus reference Genome sequences
Browse all the records for "Epstein-Barr Virus [EBV]" virus
Browse "virsi1886 " record
Length: 19
GC Content:47 %
Starting position: 110396
Strain of Virus: B95-8
GenBank Acc: V01555
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggaagaggaaacaggagau" siRNA in Human Genome sequences
See V01555 at Genbank
Pubmed:17108049
Article:Characterization of the uracil-DNA glycosylase activity of Epstein-Barr virus BKRF3 and its role in lytic viral DNA replication.
Authors:Lu CC, Huang HT, Wang JT, Slupphaug G, Li TK, Wu MC, Chen YC, Lee CP, Chen MR.
Journal:J Virol. 2007 Feb;81(3):1195-208. Epub 2006 Nov 15.
Entrez:17108049


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1887	ggcuagauuuccuacaacu	Epstein-Barr Virus [EBV]	BKRF3	NA (NPC-TW01)	DNA	20	17108049	Blast SL	refseqs
virsi1886	ggaagaggaaacaggagau	Epstein-Barr Virus [EBV]	BKRF3	NA (NPC-TW01)	DNA	10	17108049	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm