VIRsiRNAdb

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Total number of Results for 18755502 are 8
Results from 0 - 25

siRNA sequence "gcaauuaaaugacagcuca" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gcaauuaaaugacagcuca" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1748 " record
Length: 19
GC Content:37 %
Starting position: 639
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: siQUEST
Incubation Time (Hours):48

Offtargets for "gcaauuaaaugacagcuca" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:18755502
Article:Gene silencing with siRNA targeting E6/E7 as a therapeutic intervention in a mouse model of cervical cancer.
Authors:Jonson AL, Rogers LM, Ramakrishnan S, Downs LS Jr.
Journal:Gynecol Oncol. 2008 Nov;111(2):356-64. Epub 2008 Aug 27.
Entrez:18755502

siRNA sequence "gacagagcccauuacaaua" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gacagagcccauuacaaua" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1750 " record
Length: 19
GC Content:42 %
Starting position: 703
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: siQUEST
Incubation Time (Hours):48

Offtargets for "gacagagcccauuacaaua" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:18755502
Article:Gene silencing with siRNA targeting E6/E7 as a therapeutic intervention in a mouse model of cervical cancer.
Authors:Jonson AL, Rogers LM, Ramakrishnan S, Downs LS Jr.
Journal:Gynecol Oncol. 2008 Nov;111(2):356-64. Epub 2008 Aug 27.
Entrez:18755502

siRNA sequence "gcacagagcugcaaacaac" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gcacagagcugcaaacaac" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1744 " record
Length: 19
GC Content:53 %
Starting position: 150
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: siQUEST
Incubation Time (Hours):48

Offtargets for "gcacagagcugcaaacaac" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:18755502
Article:Gene silencing with siRNA targeting E6/E7 as a therapeutic intervention in a mouse model of cervical cancer.
Authors:Jonson AL, Rogers LM, Ramakrishnan S, Downs LS Jr.
Journal:Gynecol Oncol. 2008 Nov;111(2):356-64. Epub 2008 Aug 27.
Entrez:18755502

siRNA sequence "guacaaagcacacacguag" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "guacaaagcacacacguag" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1749 " record
Length: 19
GC Content:47 %
Starting position: 766
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: siQUEST
Incubation Time (Hours):48

Offtargets for "guacaaagcacacacguag" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:18755502
Article:Gene silencing with siRNA targeting E6/E7 as a therapeutic intervention in a mouse model of cervical cancer.
Authors:Jonson AL, Rogers LM, Ramakrishnan S, Downs LS Jr.
Journal:Gynecol Oncol. 2008 Nov;111(2):356-64. Epub 2008 Aug 27.
Entrez:18755502

siRNA sequence "ggagcgacccagaaaguua" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "ggagcgacccagaaaguua" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1745 " record
Length: 19
GC Content:53 %
Starting position: 121
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: siQUEST
Incubation Time (Hours):48

Offtargets for "ggagcgacccagaaaguua" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:18755502
Article:Gene silencing with siRNA targeting E6/E7 as a therapeutic intervention in a mouse model of cervical cancer.
Authors:Jonson AL, Rogers LM, Ramakrishnan S, Downs LS Jr.
Journal:Gynecol Oncol. 2008 Nov;111(2):356-64. Epub 2008 Aug 27.
Entrez:18755502

siRNA sequence "gacgugagguauaugacuu" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gacgugagguauaugacuu" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1746 " record
Length: 19
GC Content:42 %
Starting position: 219
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: siQUEST
Incubation Time (Hours):48

Offtargets for "gacgugagguauaugacuu" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:18755502
Article:Gene silencing with siRNA targeting E6/E7 as a therapeutic intervention in a mouse model of cervical cancer.
Authors:Jonson AL, Rogers LM, Ramakrishnan S, Downs LS Jr.
Journal:Gynecol Oncol. 2008 Nov;111(2):356-64. Epub 2008 Aug 27.
Entrez:18755502

siRNA sequence "gggaauccauaugcuguau" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gggaauccauaugcuguau" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1747 " record
Length: 19
GC Content:42 %
Starting position: 272
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: siQUEST
Incubation Time (Hours):48

Offtargets for "gggaauccauaugcuguau" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:18755502
Article:Gene silencing with siRNA targeting E6/E7 as a therapeutic intervention in a mouse model of cervical cancer.
Authors:Jonson AL, Rogers LM, Ramakrishnan S, Downs LS Jr.
Journal:Gynecol Oncol. 2008 Nov;111(2):356-64. Epub 2008 Aug 27.
Entrez:18755502

siRNA sequence "caccuacauugcaugaaua" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "caccuacauugcaugaaua" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1751 " record
Length: 19
GC Content:37 %
Starting position: 575
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: siQUEST
Incubation Time (Hours):48

Offtargets for "caccuacauugcaugaaua" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:18755502
Article:Gene silencing with siRNA targeting E6/E7 as a therapeutic intervention in a mouse model of cervical cancer.
Authors:Jonson AL, Rogers LM, Ramakrishnan S, Downs LS Jr.
Journal:Gynecol Oncol. 2008 Nov;111(2):356-64. Epub 2008 Aug 27.
Entrez:18755502


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1748	gcaauuaaaugacagcuca	Human Papillomavirus [HPV]	E7	CaSki	mRNA	67	18755502	Blast SL	refseqs
virsi1750	gacagagcccauuacaaua	Human Papillomavirus [HPV]	E7	CaSki	mRNA	60	18755502	Blast SL	refseqs
virsi1744	gcacagagcugcaaacaac	Human Papillomavirus [HPV]	E7	CaSki	mRNA	50	18755502	Blast SL	refseqs
virsi1749	guacaaagcacacacguag	Human Papillomavirus [HPV]	E7	CaSki	mRNA	15	18755502	Blast SL	refseqs
virsi1745	ggagcgacccagaaaguua	Human Papillomavirus [HPV]	E7	CaSki	mRNA	0	18755502	Blast SL	refseqs
virsi1746	gacgugagguauaugacuu	Human Papillomavirus [HPV]	E7	CaSki	mRNA	0	18755502	Blast SL	refseqs
virsi1747	gggaauccauaugcuguau	Human Papillomavirus [HPV]	E7	CaSki	mRNA	0	18755502	Blast SL	refseqs
virsi1751	caccuacauugcaugaaua	Human Papillomavirus [HPV]	E7	CaSki	mRNA	0	18755502	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm