VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
20015996
are
5
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1506
ggauguggauuauuuggaa
Dengue Virus [DENV]
E
BHK-21
Cell Count
92
20015996
Blast
SL
refseqs
     
siRNA sequence "
ggauguggauuauuuggaa
" alignment with "
Dengue Virus [DENV]
" virus reference Genome sequences
siRNA sequence matching with "
ggauguggauuauuuggaa
"
Dengue Virus [DENV]
" Virus reference Genome sequences
Browse all the records for "
Dengue Virus [DENV]
" virus
Browse "
virsi1506
" record
Length:
19
GC Content:
37 %
GenBank Acc:
NC_001474
Transfection Reagent:
Lipofectamine
Incubation Time (Hours):
72
Offtargets for "
ggauguggauuauuuggaa
" siRNA in Human Genome sequences
See
NC_001474
at Genbank
Pubmed:
20015996
Article:
Targeted delivery of small interfering RNA to human dendritic cells to suppress dengue virus infection and associated proinflammatory cytokine production.
Authors:
Subramanya S, Kim SS, Abraham S, Yao J, Kumar M, Kumar P, Haridas V, Lee SK, Shultz LD, Greiner D, N M, Shankar P.
Journal:
J Virol. 2010 Mar;84(5):2490-501. Epub 2009 Dec 16.
Entrez:
20015996
virsi1505
cauagaagcagaaccucca
Dengue Virus [DENV]
E
BHK-21
Cell Count
85
20015996
Blast
SL
refseqs
     
siRNA sequence "
cauagaagcagaaccucca
" alignment with "
Dengue Virus [DENV]
" virus reference Genome sequences
siRNA sequence matching with "
cauagaagcagaaccucca
"
Dengue Virus [DENV]
" Virus reference Genome sequences
Browse all the records for "
Dengue Virus [DENV]
" virus
Browse "
virsi1505
" record
Length:
19
GC Content:
47 %
GenBank Acc:
NC_001474
Transfection Reagent:
Lipofectamine
Incubation Time (Hours):
72
Offtargets for "
cauagaagcagaaccucca
" siRNA in Human Genome sequences
See
NC_001474
at Genbank
Pubmed:
20015996
Article:
Targeted delivery of small interfering RNA to human dendritic cells to suppress dengue virus infection and associated proinflammatory cytokine production.
Authors:
Subramanya S, Kim SS, Abraham S, Yao J, Kumar M, Kumar P, Haridas V, Lee SK, Shultz LD, Greiner D, N M, Shankar P.
Journal:
J Virol. 2010 Mar;84(5):2490-501. Epub 2009 Dec 16.
Entrez:
20015996
virsi1504
acacaacauggaacaauag
Dengue Virus [DENV]
E
BHK-21
Cell Count
83
20015996
Blast
SL
refseqs
     
siRNA sequence "
acacaacauggaacaauag
" alignment with "
Dengue Virus [DENV]
" virus reference Genome sequences
siRNA sequence matching with "
acacaacauggaacaauag
"
Dengue Virus [DENV]
" Virus reference Genome sequences
Browse all the records for "
Dengue Virus [DENV]
" virus
Browse "
virsi1504
" record
Length:
19
GC Content:
37 %
GenBank Acc:
NC_001474
Transfection Reagent:
Lipofectamine
Incubation Time (Hours):
72
Offtargets for "
acacaacauggaacaauag
" siRNA in Human Genome sequences
See
NC_001474
at Genbank
Pubmed:
20015996
Article:
Targeted delivery of small interfering RNA to human dendritic cells to suppress dengue virus infection and associated proinflammatory cytokine production.
Authors:
Subramanya S, Kim SS, Abraham S, Yao J, Kumar M, Kumar P, Haridas V, Lee SK, Shultz LD, Greiner D, N M, Shankar P.
Journal:
J Virol. 2010 Mar;84(5):2490-501. Epub 2009 Dec 16.
Entrez:
20015996
virsi1502
augaagagcaggacaaaag
Dengue Virus [DENV]
E
BHK-21
Cell Count
71
20015996
Blast
SL
refseqs
     
siRNA sequence "
augaagagcaggacaaaag
" alignment with "
Dengue Virus [DENV]
" virus reference Genome sequences
siRNA sequence matching with "
augaagagcaggacaaaag
"
Dengue Virus [DENV]
" Virus reference Genome sequences
Browse all the records for "
Dengue Virus [DENV]
" virus
Browse "
virsi1502
" record
Length:
19
GC Content:
42 %
GenBank Acc:
NC_001474
Transfection Reagent:
Lipofectamine
Incubation Time (Hours):
72
Offtargets for "
augaagagcaggacaaaag
" siRNA in Human Genome sequences
See
NC_001474
at Genbank
Pubmed:
20015996
Article:
Targeted delivery of small interfering RNA to human dendritic cells to suppress dengue virus infection and associated proinflammatory cytokine production.
Authors:
Subramanya S, Kim SS, Abraham S, Yao J, Kumar M, Kumar P, Haridas V, Lee SK, Shultz LD, Greiner D, N M, Shankar P.
Journal:
J Virol. 2010 Mar;84(5):2490-501. Epub 2009 Dec 16.
Entrez:
20015996
virsi1503
auuggauacagaaagagac
Dengue Virus [DENV]
E
BHK-21
Cell Count
0
20015996
Blast
SL
refseqs
     
siRNA sequence "
auuggauacagaaagagac
" alignment with "
Dengue Virus [DENV]
" virus reference Genome sequences
siRNA sequence matching with "
auuggauacagaaagagac
"
Dengue Virus [DENV]
" Virus reference Genome sequences
Browse all the records for "
Dengue Virus [DENV]
" virus
Browse "
virsi1503
" record
Length:
19
GC Content:
37 %
GenBank Acc:
NC_001474
Transfection Reagent:
Lipofectamine
Incubation Time (Hours):
72
Offtargets for "
auuggauacagaaagagac
" siRNA in Human Genome sequences
See
NC_001474
at Genbank
Pubmed:
20015996
Article:
Targeted delivery of small interfering RNA to human dendritic cells to suppress dengue virus infection and associated proinflammatory cytokine production.
Authors:
Subramanya S, Kim SS, Abraham S, Yao J, Kumar M, Kumar P, Haridas V, Lee SK, Shultz LD, Greiner D, N M, Shankar P.
Journal:
J Virol. 2010 Mar;84(5):2490-501. Epub 2009 Dec 16.
Entrez:
20015996
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm