VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
20538734
are
1
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1964
acauaagaggacucuugga
Hepatitis B Virus [HBV]
X
PLC/PRF/5
mRNA
52
20538734
Blast
SL
refseqs
     
siRNA sequence "
acauaagaggacucuugga
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
acauaagaggacucuugga
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1964
" record
Length:
19
GC Content:
42 %
Starting position:
1652
GenBank Acc:
GU563562
Transfection Reagent:
Oligofectamine
Incubation Time (Hours):
48
Offtargets for "
acauaagaggacucuugga
" siRNA in Human Genome sequences
See
GU563562
at Genbank
Pubmed:
20538734
Article:
Effects of the TP53 p.R249S mutant on proliferation and clonogenic properties in human hepatocellular carcinoma cell lines: interaction with hepatitis B virus X protein.
Authors:
Gouas DA, Shi H, Hautefeuille AH, Ortiz-Cuaran SL, Legros PC, Szymanska KJ, Galy O, Egevad LA, Abedi-Ardekani B, Wiman KG, Hantz O, Caron de Fromentel C, Chemin IA, Hainaut PL.
Journal:
Carcinogenesis. 2010 Aug;31(8):1475-82. Epub 2010 Jun 10.
Entrez:
20538734
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm