VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
20642484
are
3
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1959
auuccuaugggagugggcc
Hepatitis B Virus [HBV]
S
293T
Protein
Low
20642484
Blast
SL
refseqs
     
siRNA sequence "
auuccuaugggagugggcc
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
auuccuaugggagugggcc
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1959
" record
Length:
19
GC Content:
58 %
Starting position:
636
GenBank Acc:
U95551
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
auuccuaugggagugggcc
" siRNA in Human Genome sequences
See
U95551
at Genbank
Pubmed:
20642484
Article:
Knockdown of HBV surface antigen gene expression by a lentiviral microRNA-based system inhibits HBV replication and HCC growth.
Authors:
Xiangji L, Feng X, Qingbao C, Weifeng T, Xiaoqing J, Baihe Z, Feng S, Hongyang W, Mengchao W.
Journal:
J Viral Hepat. 2011 Sep;18(9):653-60. doi: 10.1111/j.1365-2893.2010.01346.x. Epub 2010 Jul 19.
Entrez:
20642484
virsi1960
gguauguugcccguuuguc
Hepatitis B Virus [HBV]
S
293T
Protein
80
20642484
Blast
SL
refseqs
     
siRNA sequence "
gguauguugcccguuuguc
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
gguauguugcccguuuguc
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1960
" record
Length:
19
GC Content:
53 %
Starting position:
460
GenBank Acc:
U95551
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
gguauguugcccguuuguc
" siRNA in Human Genome sequences
See
U95551
at Genbank
Pubmed:
20642484
Article:
Knockdown of HBV surface antigen gene expression by a lentiviral microRNA-based system inhibits HBV replication and HCC growth.
Authors:
Xiangji L, Feng X, Qingbao C, Weifeng T, Xiaoqing J, Baihe Z, Feng S, Hongyang W, Mengchao W.
Journal:
J Viral Hepat. 2011 Sep;18(9):653-60. doi: 10.1111/j.1365-2893.2010.01346.x. Epub 2010 Jul 19.
Entrez:
20642484
virsi1961
auccagauugggacuucaa
Hepatitis B Virus [HBV]
S
293T
Protein
50
20642484
Blast
SL
refseqs
     
siRNA sequence "
auccagauugggacuucaa
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
auccagauugggacuucaa
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1961
" record
Length:
19
GC Content:
42 %
Starting position:
2935
GenBank Acc:
U95551
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
auccagauugggacuucaa
" siRNA in Human Genome sequences
See
U95551
at Genbank
Pubmed:
20642484
Article:
Knockdown of HBV surface antigen gene expression by a lentiviral microRNA-based system inhibits HBV replication and HCC growth.
Authors:
Xiangji L, Feng X, Qingbao C, Weifeng T, Xiaoqing J, Baihe Z, Feng S, Hongyang W, Mengchao W.
Journal:
J Viral Hepat. 2011 Sep;18(9):653-60. doi: 10.1111/j.1365-2893.2010.01346.x. Epub 2010 Jul 19.
Entrez:
20642484
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm