VIRsiRNAdb

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Total number of Results for 20885450 are 9
Results from 0 - 25

siRNA sequence "cacgagcaauuaagcga" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "cacgagcaauuaagcga" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1743 " record
Length: 17
GC Content:47 %
Starting position: 671
Strain of Virus: HPV18
GenBank Acc: NC_001357
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cacgagcaauuaagcga" siRNA in Human Genome sequences
See NC_001357 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450

siRNA sequence "ucucuacuguuaugagcaauua" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "ucucuacuguuaugagcaauua" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1740 " record
Length: 22
GC Content:32 %
Starting position: 624
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ucucuacuguuaugagcaauua" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450

siRNA sequence "gcaaacaacuauacaugaua" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gcaaacaacuauacaugaua" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1736 " record
Length: 20
GC Content:30 %
Starting position: 160
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gcaaacaacuauacaugaua" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450

siRNA sequence "cucuacuguuaugagc" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "cucuacuguuaugagc" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1739 " record
Length: 16
GC Content:44 %
Starting position: 625
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cucuacuguuaugagc" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450

siRNA sequence "cugcaaacaacuauacau" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "cugcaaacaacuauacau" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1737 " record
Length: 18
GC Content:33 %
Starting position: 158
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cugcaaacaacuauacau" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450

siRNA sequence "ccaacacggcgacccua" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "ccaacacggcgacccua" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1741 " record
Length: 17
GC Content:65 %
Starting position: 123
Strain of Virus: HPV18
GenBank Acc: NC_001357
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ccaacacggcgacccua" siRNA in Human Genome sequences
See NC_001357 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450

siRNA sequence "uucuaugucacgagcaa" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "uucuaugucacgagcaa" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1742 " record
Length: 17
GC Content:41 %
Starting position: 663
Strain of Virus: HPV18
GenBank Acc: NC_001357
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uucuaugucacgagcaa" siRNA in Human Genome sequences
See NC_001357 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450

siRNA sequence "gaaauagaugguccagc" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gaaauagaugguccagc" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1738 " record
Length: 17
GC Content:47 %
Starting position: 670
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gaaauagaugguccagc" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450

siRNA sequence "uuaugcauaguauauagag" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "uuaugcauaguauauagag" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1735 " record
Length: 19
GC Content:26 %
Starting position: 251
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uuaugcauaguauauagag" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:20885450
Article:Highly potent and specific siRNAs against E6 or E7 genes of HPV16- or HPV18-infected cervical cancers.
Authors:Chang JT, Kuo TF, Chen YJ, Chiu CC, Lu YC, Li HF, Shen CR, Cheng AJ.
Journal:Cancer Gene Ther. 2010 Dec;17(12):827-36. Epub 2010 Oct 1.
Entrez:20885450


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1743	cacgagcaauuaagcga	Human Papillomavirus [HPV]	E7	HeLa	mRNA	91	20885450	Blast SL	refseqs
virsi1740	ucucuacuguuaugagcaauua	Human Papillomavirus [HPV]	E7	HeLa	mRNA	82	20885450	Blast SL	refseqs
virsi1736	gcaaacaacuauacaugaua	Human Papillomavirus [HPV]	E6	HeLa	mRNA	69	20885450	Blast SL	refseqs
virsi1739	cucuacuguuaugagc	Human Papillomavirus [HPV]	E7	HeLa	mRNA	69	20885450	Blast SL	refseqs
virsi1737	cugcaaacaacuauacau	Human Papillomavirus [HPV]	E6	HeLa	mRNA	68	20885450	Blast SL	refseqs
virsi1741	ccaacacggcgacccua	Human Papillomavirus [HPV]	E6	HeLa	mRNA	63	20885450	Blast SL	refseqs
virsi1742	uucuaugucacgagcaa	Human Papillomavirus [HPV]	E7	HeLa	mRNA	63	20885450	Blast SL	refseqs
virsi1738	gaaauagaugguccagc	Human Papillomavirus [HPV]	E7	HeLa	mRNA	30	20885450	Blast SL	refseqs
virsi1735	uuaugcauaguauauagag	Human Papillomavirus [HPV]	E6	HeLa	mRNA	11	20885450	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm