VIRsiRNAdb
Database of Viral siRNA / shRNA
Home
Search
Advance Search
Browse
By Family
By Virus
Gene
Pubmed
VIRsiID
EscapeDb
Tools
siTarAlign
siRNAmap
VIRsiblast
Submit
About
Database
Tools
Search
Browse
Team
Contact
Browse BY
Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
virsi1696
are
1
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1696
cggagacaucagacaacua
Human Papillomavirus [HPV]
E7
B16-BL6
mRNA
55
19887612
Blast
SL
refseqs
     
siRNA sequence "
cggagacaucagacaacua
" alignment with "
Human Papillomavirus [HPV]
" virus reference Genome sequences
siRNA sequence matching with "
cggagacaucagacaacua
"
Human Papillomavirus [HPV]
" Virus reference Genome sequences
Browse all the records for "
Human Papillomavirus [HPV]
" virus
Browse "
virsi1696
" record
Length:
19
GC Content:
47 %
Starting position:
748
Strain of Virus:
HPV11
GenBank Acc:
FN907963
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
cggagacaucagacaacua
" siRNA in Human Genome sequences
See
FN907963
at Genbank
Pubmed:
19887612
Article:
Epigenetic silencing of interferon-kappa in human papillomavirus type 16-positive cells.
Authors:
Rincon-Orozco B, Halec G, Rosenberger S, Muschik D, Nindl I, Bachmann A, Ritter TM, Dondog B, Ly R, Bosch FX, Zawatzky R, Rösl F.
Journal:
Cancer Res. 2009 Nov 15;69(22):8718-25. Epub 2009 Nov 3.
Entrez:
19887612
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm