VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
virsi2329
are
1
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi2329
ccaaagagguaguggacaa
Dengue Virus [DENV]
NS5
Huh-7
Plaque Count
High
21795337
Blast
SL
refseqs
     
siRNA sequence "
ccaaagagguaguggacaa
" alignment with "
Dengue Virus [DENV]
" virus reference Genome sequences
siRNA sequence matching with "
ccaaagagguaguggacaa
"
Dengue Virus [DENV]
" Virus reference Genome sequences
Browse all the records for "
Dengue Virus [DENV]
" virus
Browse "
virsi2329
" record
Length:
19
GC Content:
47 %
Starting position:
9353
Strain of Virus:
DENV-4
GenBank Acc:
AY947539
Transfection Reagent:
RNAiMAX
Incubation Time (Hours):
48
Offtargets for "
ccaaagagguaguggacaa
" siRNA in Human Genome sequences
See
AY947539
at Genbank
Pubmed:
21795337
Article:
Inhibition of dengue virus infections in cell cultures and in AG129 mice by an siRNA targeting a highly conserved sequence. Stein DA, Perry ST, Buck MD, Oehmen CS, Fischer MA, Poore E, Smith JL, Lancaster AM, Hirsch AJ, Slifka MK, Nelson JA, Shresta S, Fraceh K. J Virol. 2011 Jul 27. [Epub ahead of print] J Virol. 2011 21795337
Authors:
Journal:
Entrez:
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm