VIRsiRNAdb

Predicted off-targets seeds for siRNA "gaacuaagucucaccggua" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :634.
Total Genes with multiple seed matches: 33.
Genes with at least one seed match: NM_000033 NM_000177 NM_000186 NM_000268 NM_000278 NM_000299 NM_000367 NM_000376 NM_000378 NM_000398 NM_000407 NM_000476 NM_000527 NM_000599 NM_000620 NM_000633 NM_000661 NM_000755 NM_000814 NM_000876 NM_000877 NM_000891 NM_000901 NM_000984 NM_000991 NM_001001411 NM_001001418 NM_001001438 NM_001001481 NM_001001482 NM_001001560 NM_001001704 NM_001003406 NM_001003665 NM_001003694 NM_001003845 NM_001004298 NM_001004300 NM_001004720 NM_001004722 NM_001005337 NM_001005502 NM_001006617 NM_001006619 NM_001006620 NM_001006621 NM_001008405 NM_001008535 NM_001008737 NM_001010862 NM_001012514 NM_001012516 NM_001012755 NM_001013652 NM_001013695 NM_001017440 NM_001017535 NM_001017972 NM_001017989 NM_001024921 NM_001025205 NM_001103 NM_001114 NM_001116 NM_001197 NM_001224 NM_001304 NM_001319 NM_001406 NM_001412 NM_001532 NM_001585 NM_001679 NM_001711 NM_001789 NM_001858 NM_001874 NM_001894 NM_001986 NM_002113 NM_002125 NM_002134 NM_002147 NM_002382 NM_002474 NM_002478 NM_002518 NM_002567 NM_002581 NM_002590 NM_002601 NM_002673 NM_002707 NM_002714 NM_002719 NM_002911 NM_002926 NM_002949 NM_002994 NM_003074 NM_003174 NM_003216 NM_003300 NM_003320 NM_003392 NM_003441 NM_003505 NM_003581 NM_003605 NM_003644 NM_003682 NM_003722 NM_003740 NM_003770 NM_003781 NM_003817 NM_003842 NM_003882 NM_003921 NM_003976 NM_003987 NM_003988 NM_003989 NM_003990 NM_004003 NM_004068 NM_004172 NM_004220 NM_004293 NM_004296 NM_004319 NM_004368 NM_004393 NM_004431 NM_004455 NM_004582 NM_004624 NM_004634 NM_004657 NM_004730 NM_004734 NM_004737 NM_004745 NM_004772 NM_004802 NM_004848 NM_004863 NM_004924 NM_005067 NM_005137 NM_005297 NM_005312 NM_005357 NM_005373 NM_005386 NM_005400 NM_005409 NM_005436 NM_005438 NM_005451 NM_005539 NM_005706 NM_005717 NM_005902 NM_005935 NM_005943 NM_005947 NM_005968 NM_006035 NM_006054 NM_006135 NM_006160 NM_006203 NM_006428 NM_006454 NM_006460 NM_006494 NM_006532 NM_006536 NM_006569 NM_006599 NM_006663 NM_006698 NM_006825 NM_006887 NM_006987 NM_006991 NM_007008 NM_007033 NM_007045 NM_007050 NM_007084 NM_007273 NM_007294 NM_007295 NM_007296 NM_007297 NM_007298 NM_007299 NM_007300 NM_007301 NM_007302 NM_007303 NM_007304 NM_007305 NM_007306 NM_007318 NM_007326 NM_012069 NM_012083 NM_012287 NM_012319 NM_012384 NM_012393 NM_012458 NM_013242 NM_013265 NM_013305 NM_013365 NM_013381 NM_014023 NM_014112 NM_014310 NM_014358 NM_014360 NM_014405 NM_014434 NM_014556 NM_014562 NM_014586 NM_014593 NM_014615 NM_014630 NM_014631 NM_014678 NM_014683 NM_014699 NM_014723 NM_014732 NM_014733 NM_014754 NM_014804 NM_014805 NM_014809 NM_014835 NM_014844 NM_014850 NM_014913 NM_014943 NM_015004 NM_015035 NM_015129 NM_015224 NM_015253 NM_015446 NM_015516 NM_015568 NM_015949 NM_016095 NM_016202 NM_016221 NM_016297 NM_016407 NM_016418 NM_016531 NM_016630 NM_017555 NM_017787 NM_017799 NM_017825 NM_017857 NM_017921 NM_017943 NM_017990 NM_018027 NM_018043 NM_018046 NM_018084 NM_018112 NM_018128 NM_018209 NM_018223 NM_018224 NM_018238 NM_018269 NM_018276 NM_018299 NM_018339 NM_018566 NM_018579 NM_018641 NM_018844 NM_018931 NM_019009 NM_019119 NM_019644 NM_019845 NM_020038 NM_020119 NM_020148 NM_020182 NM_020207 NM_020367 NM_020394 NM_020408 NM_020431 NM_020437 NM_020465 NM_020524 NM_020532 NM_020734 NM_020804 NM_020826 NM_020836 NM_020921 NM_020947 NM_021081 NM_021096 NM_021106 NM_021198 NM_021738 NM_021820 NM_021912 NM_021943 NM_021947 NM_021977 NM_022049 NM_022166 NM_022460 NM_022465 NM_022468 NM_022492 NM_022567 NM_022750 NM_022844 NM_022898 NM_022910 NM_023002 NM_024034 NM_024050 NM_024069 NM_024072 NM_024117 NM_024297 NM_024342 NM_024424 NM_024425 NM_024426 NM_024513 NM_024531 NM_024554 NM_024617 NM_024623 NM_024830 NM_024834 NM_025134 NM_030574 NM_030582 NM_030594 NM_030643 NM_030773 NM_030789 NM_030926 NM_030928 NM_030929 NM_030937 NM_031203 NM_031215 NM_031433 NM_031444 NM_031462 NM_031468 NM_031490 NM_032152 NM_032221 NM_032261 NM_032276 NM_032358 NM_032379 NM_032385 NM_032484 NM_032508 NM_032569 NM_032714 NM_032753 NM_032772 NM_032819 NM_032828 NM_032836 NM_032845 NM_032880 NM_032943 NM_032949 NM_032983 NM_032984 NM_033083 NM_033133 NM_033510 NM_033513 NM_052846 NM_052899 NM_052962 NM_057090 NM_057091 NM_057160 NM_058169 NM_078471 NM_078487 NM_080621 NM_080627 NM_080738 NM_130444 NM_130445 NM_130470 NM_130471 NM_130472 NM_130473 NM_130474 NM_130475 NM_130476 NM_130795 NM_133170 NM_133443 NM_133642 NM_134264 NM_134427 NM_138346 NM_138372 NM_138395 NM_138576 NM_138640 NM_138713 NM_138714 NM_138998 NM_139275 NM_144488 NM_144489 NM_144490 NM_144498 NM_144671 NM_144782 NM_144976 NM_144991 NM_145112 NM_145113 NM_145166 NM_145175 NM_145328 NM_145348 NM_145660 NM_145725 NM_145726 NM_145799 NM_145861 NM_147160 NM_147187 NM_152221 NM_152275 NM_152314 NM_152409 NM_152470 NM_152509 NM_152701 NM_152854 NM_152889 NM_153256 NM_153261 NM_153717 NM_153828 NM_172069 NM_173214 NM_173466 NM_173481 NM_173510 NM_173511 NM_173551 NM_173583 NM_173680 NM_173795 NM_174937 NM_175609 NM_175922 NM_177972 NM_177983 NM_178011 NM_178129 NM_178145 NM_178520 NM_178526 NM_178580 NM_178581 NM_178586 NM_178823 NM_181291 NM_181309 NM_181310 NM_181359 NM_181672 NM_181673 NM_181689 NM_181776 NM_181784 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182531 NM_182557 NM_182664 NM_182752 NM_183050 NM_194248 NM_194278 NM_194286 NM_194309 NM_194310 NM_194322 NM_194323 NM_194429 NM_198252 NM_198320 NM_198490 NM_198545 NM_198679 NM_198859 NM_199050 NM_199123 NM_199169 NM_199170 NM_199171 NM_199227 NM_201277 NM_201428 NM_201429 NM_201430 NM_201432 NM_201433 NM_201520 NM_201567 NM_203318 NM_203352 NM_203353 NM_206835 NM_206927 NM_206928 NM_206929 NM_206930 NM_206933 NM_207115 NM_207126 NM_207129 NM_207306 NM_207326 NM_207335 NM_207373 NM_207411 NM_207502 NM_207506 NM_207520 NM_207521 NM_207577 XM_031553 XM_032945 XM_032996 XM_035299 XM_051017 XM_208058 XM_208522 XM_208847 XM_211853 XM_290401 XM_290540 XM_291028 XM_291729 XM_372004 XM_373453 XM_374589 XM_374945 XM_375065 XM_375292 XM_375491 XM_375606 XM_375608 XM_376303 XM_376454 XM_376550 XM_376658 XM_378398 XM_378582 XM_378608 XM_378625 XM_378842 XM_379060 XM_379206 XM_379254 XM_379309 XM_379355 XM_379406 XM_379417 XM_379452 XM_379456 XM_379459 XM_379704 XM_379877 XM_379897 XM_495939 XM_496134 XM_496143 XM_496661 XM_496895 XM_497160 XM_498464 XM_498473 XM_498479 XM_498484 XM_498612 XM_498649 XM_498736 XM_498737 XM_498817 XM_498871 XM_499003 XM_499051 XM_499056 XM_499323 XM_499503 XM_499594 XR_000265 XR_000268	Genes with multiple seed matches: NM_000268 NM_000407 NM_000599 NM_003976 NM_014615 NM_014631 NM_015568 NM_015949 NM_016418 NM_018209 NM_018844 NM_030937 NM_031462 NM_057090 NM_057091 NM_057160 NM_175609 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182752 NM_194309 NM_198859 XM_051017 XM_290401 XM_290540 XM_379877

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA