VIRsiRNAdb

Predicted off-targets seeds for siRNA "gaauccucacaauaccgca" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :593.
Total Genes with multiple seed matches: 14.
Genes with at least one seed match: NM_000046 NM_000125 NM_000162 NM_000200 NM_000272 NM_000278 NM_000303 NM_000332 NM_000432 NM_000545 NM_000599 NM_000623 NM_000632 NM_000718 NM_000887 NM_000918 NM_000950 NM_001001323 NM_001001414 NM_001001870 NM_001003652 NM_001003656 NM_001003674 NM_001003675 NM_001003698 NM_001003699 NM_001003812 NM_001004054 NM_001004349 NM_001004354 NM_001005359 NM_001005364 NM_001005387 NM_001005388 NM_001005476 NM_001006113 NM_001006624 NM_001006625 NM_001006932 NM_001007188 NM_001007267 NM_001008392 NM_001008405 NM_001008537 NM_001009569 NM_001009959 NM_001010908 NM_001012426 NM_001012427 NM_001012988 NM_001013617 NM_001013652 NM_001013678 NM_001013693 NM_001013710 NM_001013720 NM_001015051 NM_001015877 NM_001017989 NM_001018000 NM_001018053 NM_001018067 NM_001018068 NM_001018069 NM_001018090 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018097 NM_001018098 NM_001018102 NM_001024630 NM_001024843 NM_001024948 NM_001025076 NM_001025077 NM_001049 NM_001167 NM_001198 NM_001243 NM_001282 NM_001395 NM_001407 NM_001428 NM_001449 NM_001457 NM_001465 NM_001497 NM_001557 NM_001650 NM_001682 NM_001706 NM_001918 NM_002026 NM_002159 NM_002234 NM_002250 NM_002404 NM_002416 NM_002478 NM_002655 NM_002695 NM_002759 NM_002760 NM_002819 NM_002840 NM_002859 NM_002911 NM_002955 NM_003029 NM_003047 NM_003184 NM_003274 NM_003320 NM_003332 NM_003387 NM_003486 NM_003539 NM_003545 NM_003592 NM_003605 NM_003628 NM_003644 NM_003740 NM_003890 NM_003898 NM_003933 NM_003936 NM_003946 NM_003979 NM_003983 NM_003987 NM_003988 NM_004028 NM_004142 NM_004185 NM_004200 NM_004296 NM_004338 NM_004348 NM_004380 NM_004481 NM_004527 NM_004532 NM_004620 NM_004627 NM_004641 NM_004763 NM_004795 NM_004921 NM_005073 NM_005109 NM_005119 NM_005157 NM_005225 NM_005262 NM_005332 NM_005499 NM_005529 NM_005778 NM_005801 NM_005806 NM_005808 NM_005829 NM_005851 NM_005901 NM_005935 NM_005986 NM_006131 NM_006132 NM_006255 NM_006277 NM_006279 NM_006291 NM_006322 NM_006380 NM_006464 NM_006474 NM_006533 NM_006544 NM_006560 NM_006561 NM_006651 NM_006675 NM_006746 NM_006856 NM_006915 NM_007087 NM_007088 NM_007123 NM_007192 NM_007219 NM_007313 NM_007345 NM_007351 NM_009586 NM_012091 NM_012112 NM_012138 NM_012227 NM_012253 NM_012288 NM_012309 NM_012384 NM_013286 NM_013301 NM_013397 NM_013999 NM_014001 NM_014049 NM_014147 NM_014235 NM_014413 NM_014459 NM_014550 NM_014554 NM_014601 NM_014615 NM_014622 NM_014655 NM_014742 NM_014755 NM_014766 NM_014801 NM_014809 NM_014862 NM_014919 NM_015033 NM_015085 NM_015088 NM_015090 NM_015094 NM_015137 NM_015229 NM_015245 NM_015286 NM_015444 NM_015481 NM_015531 NM_015532 NM_015554 NM_015640 NM_015666 NM_015910 NM_015949 NM_015983 NM_016156 NM_016199 NM_016224 NM_016260 NM_016264 NM_016272 NM_016641 NM_017413 NM_017629 NM_017656 NM_017732 NM_017811 NM_018014 NM_018153 NM_018170 NM_018204 NM_018265 NM_018269 NM_018280 NM_018340 NM_018370 NM_018406 NM_018425 NM_018461 NM_018650 NM_018658 NM_018669 NM_018844 NM_018898 NM_018899 NM_018900 NM_018901 NM_018902 NM_018903 NM_018904 NM_018905 NM_018906 NM_018907 NM_018908 NM_018909 NM_018910 NM_018911 NM_018987 NM_018999 NM_019041 NM_019595 NM_020132 NM_020181 NM_020456 NM_020698 NM_020711 NM_020717 NM_020804 NM_020904 NM_020947 NM_021127 NM_021135 NM_021164 NM_021192 NM_021238 NM_021818 NM_022050 NM_022140 NM_022333 NM_022334 NM_022465 NM_022822 NM_022914 NM_023931 NM_024040 NM_024080 NM_024107 NM_024299 NM_024313 NM_024342 NM_024494 NM_024613 NM_024721 NM_024831 NM_024852 NM_024859 NM_024893 NM_024894 NM_024910 NM_024935 NM_024956 NM_025084 NM_025106 NM_025194 NM_025218 NM_025250 NM_030574 NM_030613 NM_030643 NM_030651 NM_030665 NM_030758 NM_030780 NM_030814 NM_031411 NM_031442 NM_031462 NM_031849 NM_031857 NM_031860 NM_031990 NM_031991 NM_032226 NM_032239 NM_032251 NM_032287 NM_032458 NM_032561 NM_032625 NM_032727 NM_032797 NM_032873 NM_032895 NM_033100 NM_033101 NM_033127 NM_033387 NM_033507 NM_033508 NM_033550 NM_052865 NM_052941 NM_052949 NM_052970 NM_053023 NM_058167 NM_080282 NM_080647 NM_080789 NM_080790 NM_130440 NM_130783 NM_130845 NM_133264 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133336 NM_138297 NM_138298 NM_138299 NM_138400 NM_138415 NM_138422 NM_138457 NM_138553 NM_138559 NM_138619 NM_138640 NM_138931 NM_138934 NM_139021 NM_144599 NM_144640 NM_144642 NM_144650 NM_144713 NM_144987 NM_145025 NM_145039 NM_145042 NM_145231 NM_145288 NM_145291 NM_145342 NM_145660 NM_145663 NM_145728 NM_145803 NM_148957 NM_148969 NM_152235 NM_152247 NM_152253 NM_152327 NM_152470 NM_152520 NM_152588 NM_152596 NM_152690 NM_152718 NM_152751 NM_152769 NM_152780 NM_152782 NM_152832 NM_152942 NM_152996 NM_152999 NM_153035 NM_153183 NM_153247 NM_153350 NM_153367 NM_153482 NM_153683 NM_153685 NM_153703 NM_170741 NM_170742 NM_171982 NM_172239 NM_172247 NM_172248 NM_172249 NM_173528 NM_173575 NM_173610 NM_173823 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 NM_174972 NM_175058 NM_175847 NM_175892 NM_175901 NM_177422 NM_177555 NM_177558 NM_177972 NM_178520 NM_178579 NM_181430 NM_181481 NM_181482 NM_181483 NM_181552 NM_181900 NM_182525 NM_182574 NM_182621 NM_182812 NM_182907 NM_194294 NM_194315 NM_194316 NM_194457 NM_194458 NM_198125 NM_198389 NM_198525 NM_198700 NM_198939 NM_199262 NM_199324 NM_199335 NM_201278 NM_201281 NM_201432 NM_201433 NM_201520 NM_203353 NM_203381 NM_203426 NM_203436 NM_205855 NM_206902 NM_207367 NM_207391 NM_207477 NM_212474 NM_212475 NM_212476 NM_212478 NM_212482 NM_212556 XM_029962 XM_042698 XM_044178 XM_053966 XM_170658 XM_208320 XM_209554 XM_290546 XM_291095 XM_370928 XM_371204 XM_371423 XM_371461 XM_371474 XM_371500 XM_371514 XM_371664 XM_372194 XM_372420 XM_372579 XM_373653 XM_373795 XM_374915 XM_375275 XM_375357 XM_375456 XM_375697 XM_376018 XM_376269 XM_376720 XM_376784 XM_377506 XM_378355 XM_378546 XM_378712 XM_378855 XM_379106 XM_379194 XM_379322 XM_379381 XM_379543 XM_379584 XM_379656 XM_379967 XM_496143 XM_496216 XM_496876 XM_496907 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_498497 XM_498555 XM_498607 XM_498898 XM_498961 XM_498972 XM_499085 XM_499110 XM_499177 XM_499293 XM_499343 XR_000192 XR_000195	Genes with multiple seed matches: NM_004481 NM_006132 NM_006464 NM_006856 NM_013397 NM_015229 NM_052949 NM_053023 NM_138298 NM_138299 NM_152235 NM_152253 NM_153350 NM_171982

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA