VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gaccgugugcacuucgcuu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1142
.
Total Genes with multiple seed matches:
65
.
Genes with at least one seed match:
NM_000071 NM_000103 NM_000110 NM_000131 NM_000147 NM_000200 NM_000208 NM_000219 NM_000246 NM_000278 NM_000307 NM_000325 NM_000369 NM_000378 NM_000405 NM_000411 NM_000486 NM_000550 NM_000565 NM_000569 NM_000576 NM_000617 NM_000633 NM_000702 NM_000738 NM_000791 NM_000795 NM_000809 NM_000878 NM_000901 NM_000910 NM_000961 NM_000962 NM_001001344 NM_001001418 NM_001001419 NM_001001420 NM_001001551 NM_001001677 NM_001001680 NM_001001685 NM_001001695 NM_001001699 NM_001001701 NM_001001706 NM_001001723 NM_001001852 NM_001001928 NM_001001929 NM_001001930 NM_001001971 NM_001002759 NM_001002844 NM_001002916 NM_001003674 NM_001003675 NM_001003684 NM_001003794 NM_001003845 NM_001004196 NM_001004197 NM_001004302 NM_001004326 NM_001004331 NM_001004333 NM_001004348 NM_001004354 NM_001005372 NM_001005388 NM_001005404 NM_001005409 NM_001005920 NM_001006113 NM_001006617 NM_001006619 NM_001006620 NM_001006621 NM_001006946 NM_001007269 NM_001007270 NM_001007271 NM_001007274 NM_001007275 NM_001007531 NM_001008224 NM_001008541 NM_001008781 NM_001009551 NM_001010000 NM_001010864 NM_001010898 NM_001010913 NM_001010917 NM_001010942 NM_001011658 NM_001012270 NM_001012271 NM_001012424 NM_001012426 NM_001012427 NM_001012651 NM_001012715 NM_001012733 NM_001012734 NM_001012755 NM_001012977 NM_001013000 NM_001013005 NM_001013650 NM_001013679 NM_001013687 NM_001013701 NM_001013707 NM_001013724 NM_001013726 NM_001014283 NM_001014380 NM_001014439 NM_001014440 NM_001014764 NM_001017368 NM_001017392 NM_001017415 NM_001017416 NM_001017922 NM_001017979 NM_001018050 NM_001018051 NM_001018052 NM_001018053 NM_001018081 NM_001018084 NM_001023560 NM_001024596 NM_001024676 NM_001024808 NM_001024843 NM_001025077 NM_001025079 NM_001025080 NM_001025108 NM_001025233 NM_001042 NM_001092 NM_001116 NM_001124 NM_001125 NM_001149 NM_001168 NM_001189 NM_001234 NM_001280 NM_001331 NM_001334 NM_001379 NM_001383 NM_001400 NM_001427 NM_001451 NM_001481 NM_001482 NM_001543 NM_001560 NM_001584 NM_001616 NM_001621 NM_001640 NM_001647 NM_001678 NM_001730 NM_001740 NM_001745 NM_001759 NM_001773 NM_001777 NM_001797 NM_001801 NM_001950 NM_002010 NM_002015 NM_002020 NM_002033 NM_002064 NM_002081 NM_002147 NM_002196 NM_002235 NM_002264 NM_002265 NM_002267 NM_002285 NM_002340 NM_002397 NM_002406 NM_002451 NM_002463 NM_002483 NM_002487 NM_002509 NM_002531 NM_002579 NM_002580 NM_002604 NM_002613 NM_002646 NM_002655 NM_002677 NM_002699 NM_002725 NM_002740 NM_002787 NM_002811 NM_002813 NM_002815 NM_002819 NM_002901 NM_002938 NM_002945 NM_002959 NM_002966 NM_002990 NM_002997 NM_003010 NM_003023 NM_003076 NM_003123 NM_003161 NM_003162 NM_003178 NM_003189 NM_003205 NM_003234 NM_003255 NM_003277 NM_003281 NM_003286 NM_003290 NM_003310 NM_003311 NM_003319 NM_003345 NM_003347 NM_003368 NM_003412 NM_003470 NM_003480 NM_003486 NM_003496 NM_003498 NM_003505 NM_003507 NM_003576 NM_003585 NM_003603 NM_003605 NM_003613 NM_003617 NM_003636 NM_003644 NM_003724 NM_003764 NM_003791 NM_003836 NM_003869 NM_003872 NM_003874 NM_003889 NM_003898 NM_003910 NM_003926 NM_003939 NM_003946 NM_003953 NM_003987 NM_003988 NM_003989 NM_003990 NM_004004 NM_004073 NM_004096 NM_004098 NM_004172 NM_004270 NM_004273 NM_004276 NM_004285 NM_004286 NM_004293 NM_004308 NM_004321 NM_004322 NM_004335 NM_004338 NM_004342 NM_004352 NM_004360 NM_004390 NM_004393 NM_004396 NM_004437 NM_004438 NM_004451 NM_004472 NM_004505 NM_004523 NM_004533 NM_004560 NM_004630 NM_004686 NM_004706 NM_004729 NM_004734 NM_004736 NM_004745 NM_004772 NM_004826 NM_004836 NM_004849 NM_004854 NM_004907 NM_004968 NM_004977 NM_004978 NM_004982 NM_005036 NM_005121 NM_005160 NM_005180 NM_005186 NM_005202 NM_005329 NM_005334 NM_005365 NM_005374 NM_005418 NM_005424 NM_005436 NM_005476 NM_005511 NM_005539 NM_005627 NM_005665 NM_005704 NM_005725 NM_005731 NM_005748 NM_005776 NM_005778 NM_005877 NM_005883 NM_005903 NM_005904 NM_005932 NM_005944 NM_005957 NM_005962 NM_005969 NM_005994 NM_006018 NM_006035 NM_006045 NM_006065 NM_006099 NM_006160 NM_006212 NM_006257 NM_006282 NM_006310 NM_006315 NM_006323 NM_006352 NM_006355 NM_006380 NM_006431 NM_006452 NM_006465 NM_006471 NM_006508 NM_006517 NM_006590 NM_006674 NM_006761 NM_006774 NM_006888 NM_006898 NM_006936 NM_006938 NM_006969 NM_007021 NM_007030 NM_007071 NM_007072 NM_007087 NM_007088 NM_007151 NM_007190 NM_007247 NM_007262 NM_007283 NM_007315 NM_007353 NM_007365 NM_007374 NM_012069 NM_012082 NM_012133 NM_012137 NM_012153 NM_012199 NM_012253 NM_012288 NM_012300 NM_012321 NM_012331 NM_012341 NM_012395 NM_012408 NM_012425 NM_012431 NM_012447 NM_012450 NM_012484 NM_012485 NM_013246 NM_013276 NM_013293 NM_013313 NM_013387 NM_013400 NM_014005 NM_014011 NM_014023 NM_014033 NM_014240 NM_014246 NM_014280 NM_014342 NM_014351 NM_014374 NM_014390 NM_014391 NM_014393 NM_014398 NM_014405 NM_014494 NM_014495 NM_014563 NM_014587 NM_014603 NM_014622 NM_014630 NM_014631 NM_014636 NM_014680 NM_014716 NM_014730 NM_014732 NM_014737 NM_014746 NM_014758 NM_014765 NM_014788 NM_014795 NM_014835 NM_014867 NM_014901 NM_014920 NM_014925 NM_014946 NM_014951 NM_014961 NM_014962 NM_014974 NM_015004 NM_015015 NM_015055 NM_015074 NM_015085 NM_015088 NM_015090 NM_015094 NM_015099 NM_015113 NM_015122 NM_015138 NM_015155 NM_015227 NM_015251 NM_015260 NM_015266 NM_015278 NM_015286 NM_015289 NM_015299 NM_015310 NM_015328 NM_015347 NM_015367 NM_015378 NM_015391 NM_015409 NM_015488 NM_015535 NM_015568 NM_015569 NM_015576 NM_015578 NM_015610 NM_015646 NM_015715 NM_015719 NM_015901 NM_016003 NM_016118 NM_016125 NM_016176 NM_016243 NM_016289 NM_016362 NM_016422 NM_016442 NM_016456 NM_016505 NM_016513 NM_016526 NM_016530 NM_016532 NM_016540 NM_016547 NM_016574 NM_016592 NM_016603 NM_016621 NM_017410 NM_017415 NM_017520 NM_017542 NM_017544 NM_017554 NM_017582 NM_017628 NM_017706 NM_017760 NM_017761 NM_017770 NM_017774 NM_017791 NM_017899 NM_017957 NM_017967 NM_017974 NM_018003 NM_018027 NM_018045 NM_018092 NM_018138 NM_018156 NM_018159 NM_018169 NM_018185 NM_018200 NM_018215 NM_018240 NM_018293 NM_018390 NM_018464 NM_018530 NM_018534 NM_018538 NM_018553 NM_018555 NM_018602 NM_018646 NM_018657 NM_018660 NM_018719 NM_018728 NM_018898 NM_018899 NM_018900 NM_018901 NM_018902 NM_018903 NM_018904 NM_018905 NM_018906 NM_018907 NM_018908 NM_018909 NM_018910 NM_018911 NM_018945 NM_018947 NM_018952 NM_018964 NM_018976 NM_019011 NM_019038 NM_019054 NM_019616 NM_020064 NM_020133 NM_020207 NM_020215 NM_020299 NM_020381 NM_020390 NM_020405 NM_020447 NM_020465 NM_020654 NM_020673 NM_020676 NM_020708 NM_020714 NM_020761 NM_020766 NM_020778 NM_020814 NM_020836 NM_020897 NM_020921 NM_020925 NM_020987 NM_020993 NM_021069 NM_021079 NM_021155 NM_021249 NM_021255 NM_021635 NM_021638 NM_021943 NM_021949 NM_021962 NM_021963 NM_022002 NM_022066 NM_022136 NM_022153 NM_022308 NM_022473 NM_022570 NM_022572 NM_022658 NM_022753 NM_022893 NM_022898 NM_022910 NM_023032 NM_023067 NM_024026 NM_024060 NM_024085 NM_024117 NM_024298 NM_024311 NM_024336 NM_024424 NM_024425 NM_024426 NM_024527 NM_024557 NM_024558 NM_024569 NM_024585 NM_024589 NM_024592 NM_024620 NM_024637 NM_024661 NM_024692 NM_024707 NM_024709 NM_024738 NM_024773 NM_024909 NM_024913 NM_024922 NM_024943 NM_025041 NM_025074 NM_025129 NM_025154 NM_025196 NM_025218 NM_030568 NM_030633 NM_030674 NM_030760 NM_030803 NM_030805 NM_030919 NM_030945 NM_030952 NM_030962 NM_031205 NM_031211 NM_031216 NM_031226 NM_031268 NM_031296 NM_031298 NM_031309 NM_031411 NM_031459 NM_031462 NM_031849 NM_031857 NM_031860 NM_031891 NM_031945 NM_031990 NM_031991 NM_032012 NM_032019 NM_032043 NM_032116 NM_032221 NM_032276 NM_032329 NM_032452 NM_032512 NM_032520 NM_032529 NM_032546 NM_032592 NM_032701 NM_032737 NM_032750 NM_032781 NM_032795 NM_032826 NM_032833 NM_032840 NM_032864 NM_032898 NM_032932 NM_032983 NM_032984 NM_032989 NM_033013 NM_033052 NM_033138 NM_033139 NM_033140 NM_033143 NM_033157 NM_033211 NM_033212 NM_033221 NM_033224 NM_033266 NM_033274 NM_033332 NM_033337 NM_033426 NM_033631 NM_033637 NM_033644 NM_033645 NM_052832 NM_052844 NM_052861 NM_052910 NM_052918 NM_052941 NM_052947 NM_052995 NM_053064 NM_053277 NM_053286 NM_054026 NM_054114 NM_057178 NM_058167 NM_058217 NM_078476 NM_080550 NM_080591 NM_080738 NM_080866 NM_080927 NM_130439 NM_130766 NM_133175 NM_133176 NM_133177 NM_133178 NM_133378 NM_133432 NM_133433 NM_133437 NM_133490 NM_133509 NM_133625 NM_133634 NM_133635 NM_134434 NM_138338 NM_138390 NM_138433 NM_138439 NM_138457 NM_138471 NM_138576 NM_138774 NM_138781 NM_138784 NM_138793 NM_138937 NM_138938 NM_138983 NM_139071 NM_139157 NM_144498 NM_144582 NM_144613 NM_144621 NM_144707 NM_144724 NM_144726 NM_144949 NM_144991 NM_145024 NM_145050 NM_145173 NM_145179 NM_145247 NM_145286 NM_145298 NM_145342 NM_145728 NM_145740 NM_145808 NM_145861 NM_147159 NM_147160 NM_147191 NM_148171 NM_148979 NM_152133 NM_152233 NM_152280 NM_152282 NM_152288 NM_152301 NM_152314 NM_152332 NM_152384 NM_152423 NM_152440 NM_152458 NM_152488 NM_152520 NM_152525 NM_152569 NM_152595 NM_152608 NM_152623 NM_152724 NM_152736 NM_152744 NM_152780 NM_152793 NM_152831 NM_152862 NM_152909 NM_152939 NM_153008 NM_153031 NM_153045 NM_153213 NM_153337 NM_153426 NM_153427 NM_153442 NM_153487 NM_153607 NM_153683 NM_153825 NM_153837 NM_156036 NM_156037 NM_170672 NM_170773 NM_170774 NM_172070 NM_172130 NM_172196 NM_172234 NM_173354 NM_173509 NM_173515 NM_173532 NM_173584 NM_173587 NM_173657 NM_173700 NM_173728 NM_173795 NM_174878 NM_174887 NM_174952 NM_175061 NM_175847 NM_175901 NM_175913 NM_175921 NM_176874 NM_177539 NM_177551 NM_178126 NM_178176 NM_178422 NM_178505 NM_178831 NM_178858 NM_180989 NM_181353 NM_181359 NM_181435 NM_181443 NM_181481 NM_181482 NM_181483 NM_181672 NM_181673 NM_181725 NM_182487 NM_182495 NM_182829 NM_183045 NM_183047 NM_183048 NM_183239 NM_187841 NM_194071 NM_194252 NM_194259 NM_194260 NM_194261 NM_194285 NM_194289 NM_194303 NM_194315 NM_194316 NM_194457 NM_194458 NM_197947 NM_197948 NM_197949 NM_197950 NM_197951 NM_197952 NM_197953 NM_198061 NM_198157 NM_198215 NM_198274 NM_198452 NM_198499 NM_198531 NM_198537 NM_198571 NM_198580 NM_198582 NM_198595 NM_198793 NM_198890 NM_198977 NM_198995 NM_199002 NM_199044 NM_199131 NM_199135 NM_199182 NM_199324 NM_199358 NM_199436 NM_201266 NM_201267 NM_201268 NM_201279 NM_201348 NM_201432 NM_201433 NM_201565 NM_201628 NM_201651 NM_203342 NM_203343 NM_203373 NM_203459 NM_203462 NM_203463 NM_205768 NM_206893 NM_207036 NM_207037 NM_207038 NM_207040 NM_207111 NM_207116 NM_207306 NM_207333 NM_207348 NM_207358 NM_207367 NM_207442 NM_207454 NM_207465 NM_207474 NM_207475 NM_207514 NM_207577 NM_213618 XM_027307 XM_031104 XM_032278 XM_042936 XM_043653 XM_047357 XM_057107 XM_058720 XM_166140 XM_208313 XM_208333 XM_208847 XM_210062 XM_212170 XM_293380 XM_294521 XM_297816 XM_298151 XM_370648 XM_370849 XM_370878 XM_371214 XM_371486 XM_371672 XM_371783 XM_371885 XM_371904 XM_372118 XM_372198 XM_372556 XM_373543 XM_373765 XM_374152 XM_374163 XM_374766 XM_375042 XM_375373 XM_375838 XM_376350 XM_376386 XM_376588 XM_376680 XM_376727 XM_377002 XM_377041 XM_378247 XM_378355 XM_378452 XM_378700 XM_378703 XM_378712 XM_378787 XM_378810 XM_378824 XM_378843 XM_378957 XM_378973 XM_379029 XM_379075 XM_379078 XM_379114 XM_379276 XM_379417 XM_379594 XM_379597 XM_379619 XM_379637 XM_379643 XM_379800 XM_379934 XM_379979 XM_495796 XM_495814 XM_495881 XM_495909 XM_496036 XM_496134 XM_496202 XM_496216 XM_496239 XM_496268 XM_496519 XM_496549 XM_496575 XM_496584 XM_496603 XM_496724 XM_496814 XM_496907 XM_497080 XM_498436 XM_498491 XM_498497 XM_498511 XM_498540 XM_498563 XM_498578 XM_498582 XM_498629 XM_498666 XM_498735 XM_498738 XM_498844 XM_498857 XM_498861 XM_498884 XM_498896 XM_498917 XM_499003 XM_499056 XM_499148 XM_499149 XM_499155 XM_499269 XM_499290 XM_499309 XM_499343 XM_499503 XM_499566 XM_499602 XR_000184 XR_000216 XR_000268 XR_000269 XR_000294
Genes with multiple seed matches:
NM_000278 NM_000369 NM_001001677 NM_001001685 NM_001004326 NM_001004348 NM_001011658 NM_001012755 NM_001013000 NM_001013005 NM_001013687 NM_001013726 NM_001025108 NM_002196 NM_002264 NM_002285 NM_002509 NM_002579 NM_002604 NM_003605 NM_003987 NM_003988 NM_003989 NM_003990 NM_004321 NM_004729 NM_004772 NM_005186 NM_007247 NM_007315 NM_012288 NM_012331 NM_014033 NM_014246 NM_014563 NM_014746 NM_015085 NM_015094 NM_015155 NM_016540 NM_017415 NM_020381 NM_020405 NM_020708 NM_020714 NM_020766 NM_025154 NM_031945 NM_080550 NM_133175 NM_133176 NM_138793 NM_138983 NM_152793 NM_173354 NM_173657 NM_173795 NM_203459 NM_206893 XM_042936 XM_375042 XM_377002 XM_378843 XM_379597 XM_498917
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)