VIRsiRNAdb

Predicted off-targets seeds for siRNA "ccgugaacgcccaccgaau" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1010.
Total Genes with multiple seed matches: 60.
Genes with at least one seed match: NM_000057 NM_000061 NM_000074 NM_000077 NM_000081 NM_000087 NM_000088 NM_000115 NM_000176 NM_000209 NM_000248 NM_000260 NM_000332 NM_000333 NM_000346 NM_000350 NM_000368 NM_000391 NM_000446 NM_000633 NM_000663 NM_000664 NM_000828 NM_000834 NM_000843 NM_000868 NM_000877 NM_000959 NM_000983 NM_001001331 NM_001001485 NM_001001486 NM_001001487 NM_001001660 NM_001001669 NM_001001678 NM_001001690 NM_001001704 NM_001002295 NM_001002296 NM_001002810 NM_001002847 NM_001002906 NM_001003406 NM_001003652 NM_001003683 NM_001003792 NM_001003793 NM_001004315 NM_001004431 NM_001005387 NM_001005388 NM_001005404 NM_001005845 NM_001006624 NM_001006625 NM_001006634 NM_001007237 NM_001007258 NM_001007262 NM_001007551 NM_001008537 NM_001008745 NM_001008801 NM_001009612 NM_001009883 NM_001009938 NM_001010874 NM_001010891 NM_001010915 NM_001011885 NM_001012508 NM_001012651 NM_001012659 NM_001012733 NM_001012734 NM_001013624 NM_001013633 NM_001013651 NM_001013653 NM_001013661 NM_001013678 NM_001013682 NM_001013697 NM_001013714 NM_001013718 NM_001014283 NM_001015052 NM_001015054 NM_001015886 NM_001017395 NM_001017408 NM_001017417 NM_001017430 NM_001017431 NM_001017435 NM_001017436 NM_001017438 NM_001017989 NM_001018067 NM_001018068 NM_001018069 NM_001018074 NM_001018075 NM_001018076 NM_001018077 NM_001018089 NM_001020825 NM_001023563 NM_001023565 NM_001024094 NM_001024592 NM_001024660 NM_001024912 NM_001025252 NM_001025253 NM_001025266 NM_001080 NM_001096 NM_001102 NM_001105 NM_001116 NM_001127 NM_001156 NM_001185 NM_001298 NM_001305 NM_001331 NM_001340 NM_001390 NM_001400 NM_001427 NM_001448 NM_001481 NM_001512 NM_001532 NM_001534 NM_001542 NM_001548 NM_001560 NM_001617 NM_001627 NM_001683 NM_001712 NM_001716 NM_001742 NM_001773 NM_001780 NM_001794 NM_001821 NM_001829 NM_001847 NM_001980 NM_001987 NM_002006 NM_002033 NM_002040 NM_002051 NM_002088 NM_002128 NM_002221 NM_002224 NM_002265 NM_002289 NM_002343 NM_002357 NM_002359 NM_002401 NM_002416 NM_002434 NM_002469 NM_002474 NM_002501 NM_002568 NM_002577 NM_002609 NM_002646 NM_002702 NM_002725 NM_002760 NM_002791 NM_002858 NM_002861 NM_002911 NM_002912 NM_002937 NM_002973 NM_002993 NM_002998 NM_003009 NM_003026 NM_003043 NM_003049 NM_003102 NM_003108 NM_003112 NM_003113 NM_003142 NM_003204 NM_003255 NM_003281 NM_003304 NM_003344 NM_003349 NM_003410 NM_003458 NM_003483 NM_003559 NM_003576 NM_003605 NM_003644 NM_003681 NM_003709 NM_003779 NM_003822 NM_003872 NM_003887 NM_003899 NM_003941 NM_003955 NM_003957 NM_004034 NM_004098 NM_004114 NM_004167 NM_004172 NM_004200 NM_004277 NM_004315 NM_004384 NM_004430 NM_004431 NM_004485 NM_004496 NM_004504 NM_004505 NM_004567 NM_004575 NM_004624 NM_004657 NM_004677 NM_004679 NM_004681 NM_004730 NM_004731 NM_004778 NM_004798 NM_004805 NM_004817 NM_004840 NM_004893 NM_004947 NM_005053 NM_005079 NM_005112 NM_005134 NM_005197 NM_005224 NM_005277 NM_005324 NM_005368 NM_005387 NM_005413 NM_005427 NM_005456 NM_005472 NM_005479 NM_005506 NM_005519 NM_005539 NM_005582 NM_005638 NM_005647 NM_005677 NM_005688 NM_005732 NM_005737 NM_005813 NM_005821 NM_005853 NM_005899 NM_005901 NM_005986 NM_006129 NM_006210 NM_006215 NM_006282 NM_006291 NM_006296 NM_006306 NM_006310 NM_006313 NM_006351 NM_006361 NM_006366 NM_006393 NM_006407 NM_006460 NM_006474 NM_006481 NM_006493 NM_006519 NM_006569 NM_006606 NM_006701 NM_006713 NM_006722 NM_006729 NM_006738 NM_006743 NM_006763 NM_006811 NM_006827 NM_006873 NM_006897 NM_006958 NM_006997 NM_006999 NM_007006 NM_007007 NM_007028 NM_007059 NM_007064 NM_007085 NM_007136 NM_007146 NM_007175 NM_007200 NM_007207 NM_007257 NM_007306 NM_007325 NM_007371 NM_012116 NM_012120 NM_012207 NM_012288 NM_012323 NM_012331 NM_012405 NM_012414 NM_012465 NM_013261 NM_013432 NM_013433 NM_013446 NM_014005 NM_014034 NM_014048 NM_014056 NM_014096 NM_014157 NM_014233 NM_014249 NM_014258 NM_014296 NM_014338 NM_014351 NM_014360 NM_014388 NM_014393 NM_014396 NM_014405 NM_014468 NM_014474 NM_014521 NM_014570 NM_014586 NM_014587 NM_014616 NM_014631 NM_014653 NM_014661 NM_014690 NM_014702 NM_014721 NM_014732 NM_014744 NM_014751 NM_014792 NM_014795 NM_014805 NM_014809 NM_014854 NM_014879 NM_014880 NM_014890 NM_014899 NM_014910 NM_014931 NM_014935 NM_014961 NM_014972 NM_015008 NM_015070 NM_015086 NM_015090 NM_015138 NM_015149 NM_015155 NM_015170 NM_015172 NM_015178 NM_015192 NM_015206 NM_015231 NM_015236 NM_015259 NM_015272 NM_015274 NM_015285 NM_015296 NM_015299 NM_015313 NM_015316 NM_015320 NM_015326 NM_015393 NM_015438 NM_015447 NM_015475 NM_015493 NM_015553 NM_015558 NM_015640 NM_015644 NM_015649 NM_015654 NM_015658 NM_015723 NM_015939 NM_015954 NM_015981 NM_016018 NM_016083 NM_016086 NM_016091 NM_016099 NM_016125 NM_016170 NM_016308 NM_016323 NM_016332 NM_016353 NM_016376 NM_016436 NM_016453 NM_016534 NM_016561 NM_016598 NM_016614 NM_016619 NM_016651 NM_017410 NM_017438 NM_017442 NM_017483 NM_017485 NM_017486 NM_017488 NM_017491 NM_017521 NM_017611 NM_017644 NM_017654 NM_017680 NM_017686 NM_017719 NM_017765 NM_017787 NM_017799 NM_017804 NM_017866 NM_017923 NM_017924 NM_017936 NM_017982 NM_018011 NM_018028 NM_018047 NM_018054 NM_018069 NM_018130 NM_018185 NM_018203 NM_018209 NM_018224 NM_018312 NM_018450 NM_018557 NM_018656 NM_018660 NM_018663 NM_018697 NM_018702 NM_018704 NM_018715 NM_018941 NM_018959 NM_018964 NM_018994 NM_018999 NM_019000 NM_019590 NM_019605 NM_019895 NM_020123 NM_020133 NM_020139 NM_020182 NM_020185 NM_020207 NM_020215 NM_020239 NM_020390 NM_020399 NM_020433 NM_020546 NM_020686 NM_020698 NM_020774 NM_020778 NM_020802 NM_020850 NM_020858 NM_020894 NM_020909 NM_020914 NM_020927 NM_021079 NM_021096 NM_021101 NM_021137 NM_021149 NM_021202 NM_021242 NM_021644 NM_021724 NM_021945 NM_021988 NM_022046 NM_022134 NM_022152 NM_022160 NM_022359 NM_022442 NM_022468 NM_022482 NM_022486 NM_022492 NM_022567 NM_022718 NM_022780 NM_022817 NM_022834 NM_022837 NM_022844 NM_022909 NM_022912 NM_024054 NM_024101 NM_024490 NM_024527 NM_024554 NM_024592 NM_024610 NM_024611 NM_024637 NM_024718 NM_024757 NM_024774 NM_024785 NM_024818 NM_024828 NM_024830 NM_024871 NM_024894 NM_024910 NM_024935 NM_024952 NM_025104 NM_025134 NM_025193 NM_025203 NM_025208 NM_025237 NM_025238 NM_025264 NM_030621 NM_030636 NM_030641 NM_030806 NM_030919 NM_030920 NM_030979 NM_031271 NM_031274 NM_031305 NM_031309 NM_031420 NM_031453 NM_031858 NM_031862 NM_031898 NM_031964 NM_031966 NM_032012 NM_032017 NM_032020 NM_032221 NM_032227 NM_032242 NM_032294 NM_032356 NM_032367 NM_032369 NM_032445 NM_032499 NM_032521 NM_032538 NM_032578 NM_032587 NM_032632 NM_032711 NM_032740 NM_032783 NM_032827 NM_032849 NM_032966 NM_032975 NM_032980 NM_032995 NM_033056 NM_033087 NM_033112 NM_033114 NM_033116 NM_033129 NM_033135 NM_033181 NM_033323 NM_033357 NM_033386 NM_033387 NM_033425 NM_033439 NM_033633 NM_033641 NM_033642 NM_033666 NM_052816 NM_052834 NM_052839 NM_052906 NM_052910 NM_052926 NM_053053 NM_053277 NM_053279 NM_057175 NM_057177 NM_058183 NM_058189 NM_058195 NM_058197 NM_058217 NM_078483 NM_080417 NM_080538 NM_080539 NM_080540 NM_080541 NM_080542 NM_080543 NM_080544 NM_080612 NM_080737 NM_080751 NM_130469 NM_130807 NM_133367 NM_133468 NM_133478 NM_133479 NM_133482 NM_133496 NM_133646 NM_134422 NM_134423 NM_134424 NM_138294 NM_138609 NM_138610 NM_138620 NM_138688 NM_138706 NM_138820 NM_138926 NM_138939 NM_138940 NM_139015 NM_139131 NM_139159 NM_139265 NM_144667 NM_144721 NM_144728 NM_144729 NM_144767 NM_144778 NM_144964 NM_145001 NM_145052 NM_145233 NM_145265 NM_145278 NM_145298 NM_145695 NM_145730 NM_145799 NM_145912 NM_147161 NM_147194 NM_148170 NM_148894 NM_152253 NM_152272 NM_152371 NM_152400 NM_152412 NM_152458 NM_152470 NM_152527 NM_152554 NM_152579 NM_152582 NM_152591 NM_152624 NM_152665 NM_152666 NM_152678 NM_152680 NM_152684 NM_152702 NM_152719 NM_152760 NM_152763 NM_152835 NM_152840 NM_152878 NM_152999 NM_153022 NM_153027 NM_153183 NM_153231 NM_153246 NM_153328 NM_153451 NM_153456 NM_153498 NM_153610 NM_153616 NM_153617 NM_153618 NM_153619 NM_153812 NM_170601 NM_170705 NM_170711 NM_170740 NM_170743 NM_170768 NM_171825 NM_171998 NM_172206 NM_173064 NM_173065 NM_173469 NM_173475 NM_173551 NM_173570 NM_173588 NM_173675 NM_173872 NM_174911 NM_175609 NM_175616 NM_175900 NM_175922 NM_176874 NM_177438 NM_177532 NM_177550 NM_177924 NM_177954 NM_178314 NM_178523 NM_181355 NM_181457 NM_181458 NM_181459 NM_181460 NM_181618 NM_181654 NM_181704 NM_181738 NM_181825 NM_181831 NM_181880 NM_182481 NM_182482 NM_182484 NM_182558 NM_182568 NM_182596 NM_182697 NM_182734 NM_182791 NM_182830 NM_182909 NM_182933 NM_183061 NM_183385 NM_184231 NM_194303 NM_194309 NM_194324 NM_194356 NM_194430 NM_194431 NM_197956 NM_197973 NM_198147 NM_198158 NM_198159 NM_198177 NM_198178 NM_198329 NM_198389 NM_198461 NM_198462 NM_198681 NM_198795 NM_198830 NM_198835 NM_198935 NM_199050 NM_199121 NM_199129 NM_199132 NM_199144 NM_199169 NM_199170 NM_199171 NM_199182 NM_199203 NM_199329 NM_199464 NM_201266 NM_201279 NM_201348 NM_201431 NM_201432 NM_201433 NM_201550 NM_201591 NM_201592 NM_201613 NM_201629 NM_203303 NM_203351 NM_203377 NM_203378 NM_203428 NM_203429 NM_205855 NM_205860 NM_206853 NM_206854 NM_206855 NM_206860 NM_206861 NM_206862 NM_207304 NM_207337 NM_207435 NM_207442 NM_207460 NM_207465 NM_207495 NM_207500 NM_213568 NM_213606 NM_213612 NM_214711 XM_016113 XM_027236 XM_042833 XM_055636 XM_056455 XM_087672 XM_113763 XM_117294 XM_166103 XM_211871 XM_290527 XM_293380 XM_298151 XM_350880 XM_371074 XM_371120 XM_371374 XM_371488 XM_371820 XM_371904 XM_372019 XM_372028 XM_372030 XM_372193 XM_372205 XM_372233 XM_373631 XM_373742 XM_373844 XM_374007 XM_374033 XM_374078 XM_374163 XM_374169 XM_374192 XM_375029 XM_375090 XM_376018 XM_376165 XM_376207 XM_376241 XM_376558 XM_376560 XM_376658 XM_376822 XM_378272 XM_378544 XM_378698 XM_378705 XM_378738 XM_378751 XM_378786 XM_378787 XM_378823 XM_378855 XM_378866 XM_378949 XM_378993 XM_379041 XM_379060 XM_379100 XM_379114 XM_379118 XM_379163 XM_379189 XM_379267 XM_379273 XM_379386 XM_379391 XM_379395 XM_379417 XM_379510 XM_379668 XM_379897 XM_379904 XM_380131 XM_495798 XM_495886 XM_495888 XM_495939 XM_495950 XM_496401 XM_496575 XM_496587 XM_496637 XM_496879 XM_498442 XM_498540 XM_498609 XM_498629 XM_498649 XM_498696 XM_498697 XM_498698 XM_498814 XM_498828 XM_498829 XM_498859 XM_498878 XM_498894 XM_498929 XM_498972 XM_498974 XM_498984 XM_499117 XM_499147 XM_499164 XM_499290 XM_499298 XM_499351 XM_499552 XM_499572 XR_000195 XR_000268 XR_000293	Genes with multiple seed matches: NM_000248 NM_000664 NM_000868 NM_001003652 NM_001005388 NM_001006634 NM_001008745 NM_001012651 NM_001012733 NM_001012734 NM_001013678 NM_003605 NM_004200 NM_005901 NM_006366 NM_006722 NM_006873 NM_014899 NM_015090 NM_015170 NM_015206 NM_015475 NM_016598 NM_017799 NM_018054 NM_018069 NM_018715 NM_020133 NM_020182 NM_020546 NM_022468 NM_022718 NM_032367 NM_058217 NM_080417 NM_148894 NM_152253 NM_152470 NM_153451 NM_170743 NM_173064 NM_173065 NM_182909 NM_198158 NM_198159 NM_198177 NM_198178 NM_198835 NM_199169 NM_199170 NM_199171 NM_206855 XM_042833 XM_372028 XM_372030 XM_375090 XM_379391 XM_379417 XM_498540 XM_498894

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA