VIRsiRNAdb

Predicted off-targets seeds for siRNA "ggccaaguguuugcugacgca" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :950.
Total Genes with multiple seed matches: 48.
Genes with at least one seed match: NM_000021 NM_000037 NM_000052 NM_000053 NM_000059 NM_000065 NM_000074 NM_000092 NM_000109 NM_000189 NM_000192 NM_000231 NM_000248 NM_000253 NM_000278 NM_000301 NM_000382 NM_000398 NM_000409 NM_000423 NM_000430 NM_000451 NM_000457 NM_000476 NM_000486 NM_000602 NM_000663 NM_000664 NM_000778 NM_000795 NM_000813 NM_000820 NM_000983 NM_001001188 NM_001001557 NM_001001560 NM_001001677 NM_001001698 NM_001001707 NM_001001927 NM_001002034 NM_001002231 NM_001002232 NM_001002760 NM_001002761 NM_001002814 NM_001002848 NM_001002849 NM_001003399 NM_001003656 NM_001003674 NM_001003675 NM_001003715 NM_001003716 NM_001003897 NM_001004319 NM_001005404 NM_001005918 NM_001006641 NM_001006642 NM_001006643 NM_001007026 NM_001007271 NM_001007274 NM_001007275 NM_001008390 NM_001008406 NM_001008407 NM_001008537 NM_001008658 NM_001008701 NM_001008742 NM_001008895 NM_001009820 NM_001009939 NM_001010898 NM_001010925 NM_001010980 NM_001010982 NM_001011724 NM_001011725 NM_001012729 NM_001012733 NM_001012734 NM_001012755 NM_001012982 NM_001013619 NM_001013635 NM_001013637 NM_001013667 NM_001013698 NM_001013727 NM_001013842 NM_001013845 NM_001014797 NM_001014977 NM_001014987 NM_001014988 NM_001014989 NM_001017922 NM_001017995 NM_001018050 NM_001018051 NM_001018052 NM_001018055 NM_001023566 NM_001024657 NM_001095 NM_001117 NM_001264 NM_001280 NM_001282 NM_001287 NM_001289 NM_001408 NM_001419 NM_001497 NM_001505 NM_001544 NM_001562 NM_001908 NM_001922 NM_001932 NM_001940 NM_001941 NM_001989 NM_001995 NM_002003 NM_002068 NM_002081 NM_002086 NM_002088 NM_002105 NM_002136 NM_002209 NM_002226 NM_002234 NM_002293 NM_002357 NM_002401 NM_002424 NM_002501 NM_002582 NM_002591 NM_002599 NM_002662 NM_002716 NM_002725 NM_002737 NM_002813 NM_002819 NM_002853 NM_002929 NM_002941 NM_002996 NM_003009 NM_003036 NM_003045 NM_003068 NM_003082 NM_003099 NM_003108 NM_003123 NM_003151 NM_003212 NM_003225 NM_003239 NM_003247 NM_003255 NM_003281 NM_003290 NM_003294 NM_003382 NM_003392 NM_003438 NM_003528 NM_003589 NM_003636 NM_003654 NM_003663 NM_003713 NM_003739 NM_003742 NM_003748 NM_003749 NM_003775 NM_003822 NM_003842 NM_003882 NM_003926 NM_003987 NM_003988 NM_003989 NM_003990 NM_004006 NM_004007 NM_004009 NM_004010 NM_004011 NM_004012 NM_004013 NM_004014 NM_004015 NM_004016 NM_004017 NM_004018 NM_004020 NM_004021 NM_004022 NM_004023 NM_004040 NM_004124 NM_004204 NM_004338 NM_004382 NM_004390 NM_004409 NM_004437 NM_004473 NM_004482 NM_004485 NM_004500 NM_004505 NM_004516 NM_004612 NM_004678 NM_004711 NM_004734 NM_004745 NM_004756 NM_004772 NM_004782 NM_004805 NM_004854 NM_004878 NM_004884 NM_004893 NM_004923 NM_005009 NM_005018 NM_005076 NM_005095 NM_005112 NM_005157 NM_005185 NM_005194 NM_005197 NM_005218 NM_005224 NM_005253 NM_005267 NM_005277 NM_005312 NM_005336 NM_005378 NM_005434 NM_005465 NM_005504 NM_005551 NM_005566 NM_005574 NM_005638 NM_005716 NM_005738 NM_005795 NM_005809 NM_005822 NM_005829 NM_005864 NM_005883 NM_005885 NM_005895 NM_005902 NM_005920 NM_005957 NM_005969 NM_005986 NM_006018 NM_006035 NM_006037 NM_006045 NM_006187 NM_006266 NM_006277 NM_006279 NM_006454 NM_006500 NM_006547 NM_006578 NM_006627 NM_006688 NM_006693 NM_006698 NM_006705 NM_006722 NM_006732 NM_006736 NM_006753 NM_006774 NM_006779 NM_006825 NM_006865 NM_006990 NM_007007 NM_007184 NM_007313 NM_007318 NM_007321 NM_007326 NM_007345 NM_007353 NM_007354 NM_007368 NM_007371 NM_012091 NM_012104 NM_012189 NM_012249 NM_012253 NM_012268 NM_012285 NM_012302 NM_012398 NM_012458 NM_013282 NM_013316 NM_013343 NM_013365 NM_013382 NM_014154 NM_014226 NM_014269 NM_014293 NM_014387 NM_014395 NM_014424 NM_014468 NM_014470 NM_014507 NM_014600 NM_014679 NM_014698 NM_014730 NM_014772 NM_014792 NM_014795 NM_014797 NM_014839 NM_014844 NM_014850 NM_014864 NM_014902 NM_014903 NM_014921 NM_014969 NM_015023 NM_015033 NM_015041 NM_015085 NM_015094 NM_015107 NM_015193 NM_015198 NM_015206 NM_015229 NM_015253 NM_015274 NM_015313 NM_015316 NM_015318 NM_015332 NM_015350 NM_015374 NM_015385 NM_015439 NM_015518 NM_015558 NM_015560 NM_015568 NM_015570 NM_015669 NM_015865 NM_015871 NM_015892 NM_015898 NM_016025 NM_016101 NM_016155 NM_016176 NM_016194 NM_016196 NM_016263 NM_016275 NM_016289 NM_016319 NM_016337 NM_016547 NM_016570 NM_016574 NM_016598 NM_016611 NM_016941 NM_017410 NM_017413 NM_017491 NM_017527 NM_017566 NM_017638 NM_017668 NM_017675 NM_017709 NM_017728 NM_017769 NM_017798 NM_017811 NM_017849 NM_017911 NM_017955 NM_017966 NM_017974 NM_018028 NM_018088 NM_018110 NM_018180 NM_018210 NM_018216 NM_018224 NM_018246 NM_018257 NM_018277 NM_018374 NM_018375 NM_018433 NM_018461 NM_018518 NM_018538 NM_018566 NM_018641 NM_018660 NM_018670 NM_018691 NM_018715 NM_018717 NM_018718 NM_018941 NM_019094 NM_019118 NM_019595 NM_019601 NM_020038 NM_020039 NM_020126 NM_020180 NM_020182 NM_020311 NM_020312 NM_020405 NM_020429 NM_020475 NM_020476 NM_020477 NM_020546 NM_020651 NM_020676 NM_020686 NM_020738 NM_020768 NM_020956 NM_021064 NM_021101 NM_021149 NM_021224 NM_021242 NM_021615 NM_021638 NM_021911 NM_021915 NM_021943 NM_021975 NM_022042 NM_022050 NM_022066 NM_022077 NM_022112 NM_022114 NM_022129 NM_022152 NM_022164 NM_022170 NM_022377 NM_022471 NM_022480 NM_022491 NM_022557 NM_022640 NM_022644 NM_022725 NM_023112 NM_023938 NM_023939 NM_024019 NM_024110 NM_024164 NM_024332 NM_024334 NM_024423 NM_024492 NM_024510 NM_024513 NM_024536 NM_024583 NM_024586 NM_024607 NM_024624 NM_024630 NM_024633 NM_024742 NM_024757 NM_024793 NM_024811 NM_024815 NM_024832 NM_025090 NM_025140 NM_025154 NM_025191 NM_025230 NM_025262 NM_030636 NM_030665 NM_030781 NM_030788 NM_030796 NM_030798 NM_030803 NM_030919 NM_030945 NM_031157 NM_031314 NM_031455 NM_031475 NM_031484 NM_031990 NM_031991 NM_031992 NM_032041 NM_032153 NM_032179 NM_032227 NM_032242 NM_032262 NM_032263 NM_032286 NM_032287 NM_032289 NM_032308 NM_032310 NM_032329 NM_032368 NM_032446 NM_032515 NM_032538 NM_032770 NM_032797 NM_032829 NM_032855 NM_032920 NM_032932 NM_032950 NM_032995 NM_033090 NM_033100 NM_033129 NM_033212 NM_033229 NM_033309 NM_033315 NM_033393 NM_033421 NM_033446 NM_033513 NM_033626 NM_052844 NM_052898 NM_052899 NM_052901 NM_053056 NM_058178 NM_078487 NM_080473 NM_080605 NM_080717 NM_080764 NM_080862 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_133282 NM_133334 NM_133377 NM_133631 NM_134268 NM_134422 NM_134423 NM_134424 NM_138323 NM_138324 NM_138338 NM_138346 NM_138372 NM_138384 NM_138445 NM_138473 NM_138609 NM_138610 NM_138643 NM_138644 NM_138793 NM_138971 NM_138972 NM_138973 NM_139176 NM_139179 NM_144578 NM_144599 NM_144623 NM_144682 NM_145013 NM_145060 NM_145115 NM_145117 NM_145159 NM_145275 NM_145701 NM_145727 NM_145798 NM_145808 NM_146388 NM_147187 NM_147780 NM_147781 NM_147782 NM_147783 NM_148170 NM_148175 NM_148176 NM_148904 NM_148905 NM_148906 NM_148907 NM_148908 NM_148909 NM_148920 NM_148955 NM_148979 NM_152264 NM_152317 NM_152335 NM_152367 NM_152395 NM_152425 NM_152460 NM_152489 NM_152506 NM_152515 NM_152655 NM_152826 NM_152855 NM_152888 NM_152939 NM_152988 NM_153020 NM_153022 NM_153031 NM_153184 NM_153239 NM_153266 NM_153337 NM_153345 NM_153355 NM_153620 NM_153646 NM_153647 NM_153648 NM_153746 NM_153752 NM_153768 NM_153769 NM_153770 NM_156036 NM_171982 NM_172020 NM_172130 NM_172208 NM_172212 NM_172367 NM_173477 NM_173482 NM_173509 NM_173588 NM_173624 NM_173647 NM_173652 NM_173669 NM_173680 NM_173681 NM_173804 NM_174902 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 NM_174972 NM_175053 NM_175058 NM_175709 NM_175847 NM_175907 NM_175908 NM_176795 NM_176799 NM_177414 NM_177551 NM_177925 NM_178122 NM_178124 NM_178314 NM_178435 NM_178477 NM_178516 NM_178557 NM_178849 NM_181349 NM_181357 NM_181435 NM_181481 NM_181482 NM_181483 NM_181486 NM_181489 NM_181670 NM_181714 NM_181724 NM_181737 NM_182533 NM_182612 NM_182740 NM_182751 NM_182752 NM_182832 NM_182964 NM_183006 NM_183373 NM_183414 NM_194278 NM_194290 NM_194303 NM_194352 NM_198082 NM_198158 NM_198159 NM_198177 NM_198178 NM_198279 NM_198485 NM_198595 NM_198679 NM_198797 NM_198835 NM_198849 NM_198850 NM_198890 NM_198935 NM_198999 NM_199040 NM_199050 NM_199126 NM_199169 NM_199170 NM_199171 NM_199175 NM_199454 NM_201348 NM_201565 NM_201591 NM_201592 NM_202467 NM_202468 NM_202469 NM_202470 NM_202494 NM_203342 NM_203343 NM_203346 NM_203351 NM_203395 NM_203413 NM_203439 NM_203506 NM_205860 NM_206828 NM_207032 NM_207033 NM_207034 NM_207285 NM_207351 NM_207366 NM_207378 NM_207440 NM_207451 NM_207461 NM_207463 NM_207473 NM_207483 NM_207644 NM_212460 NM_213613 NM_213654 XM_029353 XM_032996 XM_039393 XM_042301 XM_046600 XM_049237 XM_051264 XM_055636 XM_059318 XM_059482 XM_059689 XM_065166 XM_066058 XM_088459 XM_117451 XM_167152 XM_171054 XM_172801 XM_208522 XM_209429 XM_209559 XM_209700 XM_290401 XM_291346 XM_291729 XM_294688 XM_297816 XM_370880 XM_370932 XM_370982 XM_371015 XM_371755 XM_372013 XM_372019 XM_372028 XM_372030 XM_372193 XM_372267 XM_373636 XM_373687 XM_373810 XM_373883 XM_374045 XM_374108 XM_375042 XM_375081 XM_375359 XM_375853 XM_376018 XM_376241 XM_376372 XM_376567 XM_376902 XM_377742 XM_378224 XM_378279 XM_378309 XM_378546 XM_378553 XM_378558 XM_378625 XM_378843 XM_378957 XM_379065 XM_379145 XM_379189 XM_379273 XM_379309 XM_379363 XM_379452 XM_379518 XM_379619 XM_379664 XM_379665 XM_379774 XM_379877 XM_379927 XM_380103 XM_380143 XM_380151 XM_495860 XM_495888 XM_496231 XM_496351 XM_496895 XM_496943 XM_496945 XM_496946 XM_496947 XM_496948 XM_496949 XM_496951 XM_496952 XM_496953 XM_496954 XM_496955 XM_496956 XM_496957 XM_496961 XM_497019 XM_497036 XM_497080 XM_497134 XM_498490 XM_498511 XM_498568 XM_498587 XM_498632 XM_498666 XM_498698 XM_498751 XM_498902 XM_498917 XM_498955 XM_498960 XM_499142 XM_499177 XM_499323 XM_499362 XR_000190 XR_000217 XR_000256 XR_000265	Genes with multiple seed matches: NM_000092 NM_000451 NM_000664 NM_001001677 NM_001002814 NM_001006641 NM_001006642 NM_001006643 NM_001013727 NM_003108 NM_003281 NM_005076 NM_005197 NM_005253 NM_005986 NM_006037 NM_007345 NM_007353 NM_012398 NM_015206 NM_017413 NM_017566 NM_018110 NM_018210 NM_020405 NM_024492 NM_024536 NM_025230 NM_032262 NM_032329 NM_052901 NM_138384 NM_156036 NM_178557 NM_181357 NM_182832 NM_198835 NM_198935 NM_199175 NM_201565 NM_207483 XM_059318 XM_065166 XM_066058 XM_376018 XM_379189 XM_379452 XM_497080

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA