VIRsiRNAdb

Predicted off-targets seeds for siRNA "gugucaaggaggaucgacu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :530.
Total Genes with multiple seed matches: 21.
Genes with at least one seed match: NM_000071 NM_000149 NM_000176 NM_000248 NM_000297 NM_000330 NM_000353 NM_000393 NM_000411 NM_000420 NM_000628 NM_000663 NM_000687 NM_000692 NM_000793 NM_000817 NM_000903 NM_000924 NM_000926 NM_000962 NM_000997 NM_001001188 NM_001001330 NM_001001342 NM_001001693 NM_001001699 NM_001001732 NM_001001894 NM_001001924 NM_001001925 NM_001001927 NM_001001931 NM_001002233 NM_001002814 NM_001003679 NM_001004328 NM_001004355 NM_001005366 NM_001005736 NM_001005737 NM_001005766 NM_001005782 NM_001006656 NM_001006932 NM_001006946 NM_001007023 NM_001007546 NM_001008408 NM_001009571 NM_001009956 NM_001009960 NM_001010000 NM_001010925 NM_001010976 NM_001011713 NM_001012614 NM_001012626 NM_001012713 NM_001012714 NM_001012733 NM_001012734 NM_001012984 NM_001013675 NM_001013707 NM_001017989 NM_001018074 NM_001018075 NM_001018076 NM_001018077 NM_001020818 NM_001020819 NM_001020820 NM_001020821 NM_001020825 NM_001024094 NM_001024457 NM_001024631 NM_001024843 NM_001025076 NM_001025077 NM_001128 NM_001304 NM_001328 NM_001358 NM_001386 NM_001624 NM_001642 NM_001668 NM_001717 NM_001859 NM_002048 NM_002131 NM_002236 NM_002381 NM_002480 NM_002501 NM_002556 NM_002558 NM_002577 NM_002653 NM_002715 NM_002725 NM_002787 NM_002834 NM_002956 NM_002997 NM_003047 NM_003162 NM_003223 NM_003262 NM_003281 NM_003316 NM_003352 NM_003417 NM_003605 NM_003679 NM_003831 NM_003846 NM_003858 NM_003901 NM_003936 NM_003938 NM_004274 NM_004277 NM_004393 NM_004507 NM_004546 NM_004583 NM_004650 NM_004709 NM_004734 NM_004959 NM_004973 NM_004992 NM_005065 NM_005093 NM_005099 NM_005116 NM_005134 NM_005154 NM_005202 NM_005259 NM_005338 NM_005392 NM_005491 NM_005518 NM_005578 NM_005583 NM_005668 NM_005737 NM_005797 NM_005843 NM_005935 NM_005975 NM_005986 NM_006107 NM_006148 NM_006212 NM_006226 NM_006313 NM_006322 NM_006348 NM_006451 NM_006465 NM_006481 NM_006508 NM_006544 NM_006561 NM_006565 NM_006587 NM_006596 NM_006705 NM_006722 NM_006762 NM_006943 NM_006999 NM_007171 NM_007213 NM_012072 NM_012074 NM_012083 NM_012234 NM_012300 NM_012301 NM_012304 NM_012334 NM_012398 NM_013309 NM_013989 NM_014143 NM_014214 NM_014222 NM_014326 NM_014350 NM_014637 NM_014661 NM_014702 NM_014715 NM_014725 NM_014730 NM_014762 NM_014821 NM_014840 NM_014850 NM_014919 NM_015050 NM_015064 NM_015088 NM_015097 NM_015124 NM_015178 NM_015191 NM_015282 NM_015288 NM_015315 NM_015371 NM_015393 NM_015417 NM_015428 NM_015435 NM_015438 NM_015589 NM_015609 NM_015678 NM_015691 NM_016087 NM_016275 NM_016322 NM_016424 NM_016523 NM_016575 NM_016592 NM_016626 NM_016831 NM_017558 NM_017577 NM_017677 NM_017748 NM_017872 NM_017899 NM_017920 NM_017926 NM_017954 NM_017972 NM_017982 NM_018133 NM_018185 NM_018199 NM_018215 NM_018340 NM_018373 NM_018847 NM_018984 NM_019084 NM_019842 NM_019857 NM_020037 NM_020038 NM_020123 NM_020133 NM_020194 NM_020354 NM_020429 NM_020440 NM_020686 NM_020749 NM_020773 NM_020774 NM_020820 NM_020831 NM_020861 NM_020980 NM_021116 NM_021135 NM_021180 NM_021183 NM_021238 NM_021252 NM_021905 NM_021969 NM_022130 NM_022484 NM_022766 NM_022819 NM_023036 NM_023929 NM_024040 NM_024080 NM_024517 NM_024546 NM_024594 NM_024689 NM_024772 NM_024843 NM_024877 NM_024913 NM_024922 NM_024935 NM_024953 NM_025074 NM_025151 NM_025197 NM_025208 NM_030655 NM_030764 NM_030816 NM_030919 NM_030929 NM_031461 NM_032041 NM_032138 NM_032310 NM_032432 NM_032529 NM_032590 NM_032728 NM_032738 NM_032836 NM_032865 NM_032866 NM_032874 NM_032900 NM_032910 NM_032957 NM_032968 NM_032969 NM_032973 NM_032988 NM_033135 NM_033184 NM_033326 NM_033543 NM_033551 NM_033644 NM_033645 NM_033658 NM_052878 NM_052900 NM_052966 NM_052970 NM_052988 NM_053029 NM_053055 NM_057168 NM_078470 NM_078628 NM_080542 NM_080543 NM_080591 NM_080617 NM_080656 NM_080744 NM_133265 NM_133332 NM_133333 NM_133445 NM_133448 NM_134470 NM_138373 NM_138444 NM_138494 NM_138731 NM_138995 NM_138998 NM_139018 NM_144632 NM_144974 NM_145071 NM_145276 NM_145663 NM_145698 NM_145899 NM_145901 NM_145902 NM_145903 NM_145904 NM_145905 NM_145906 NM_152235 NM_152247 NM_152253 NM_152340 NM_152498 NM_152690 NM_152717 NM_152751 NM_152831 NM_152933 NM_152934 NM_152991 NM_153010 NM_153022 NM_153040 NM_153450 NM_153610 NM_170665 NM_171998 NM_172172 NM_172364 NM_173172 NM_173624 NM_173809 NM_174878 NM_174911 NM_175063 NM_175078 NM_175859 NM_175864 NM_175900 NM_176095 NM_176853 NM_177427 NM_177550 NM_178037 NM_178038 NM_178039 NM_178040 NM_178426 NM_178427 NM_178556 NM_181349 NM_181733 NM_181785 NM_182495 NM_182554 NM_182789 NM_182831 NM_183323 NM_183419 NM_194293 NM_194299 NM_198098 NM_198123 NM_198124 NM_198141 NM_198158 NM_198159 NM_198173 NM_198174 NM_198177 NM_198178 NM_198240 NM_198256 NM_198257 NM_198258 NM_198325 NM_198485 NM_199045 NM_199075 NM_199341 NM_199346 NM_199420 NM_201260 NM_201261 NM_201348 NM_201434 NM_203327 NM_203353 NM_203488 NM_206538 NM_206817 NM_206818 NM_206835 NM_206887 NM_206902 NM_206910 NM_207286 NM_207287 NM_207288 NM_207325 NM_207333 NM_207368 NM_207438 NM_207501 NM_207644 NM_212464 NM_212467 NM_212559 XM_043493 XM_046581 XM_053966 XM_059689 XM_166320 XM_211367 XM_294993 XM_370849 XM_371053 XM_371486 XM_371664 XM_373921 XM_374880 XM_375935 XM_376207 XM_376334 XM_378542 XM_378544 XM_378620 XM_378982 XM_378983 XM_379094 XM_379145 XM_379184 XM_379254 XM_379273 XM_379406 XM_379452 XM_379535 XM_379619 XM_380160 XM_495841 XM_495886 XM_496579 XM_496814 XM_496959 XM_496964 XM_496966 XM_497056 XM_498422 XM_498440 XM_498451 XM_498660 XM_498986 XM_499085 XM_499164 XM_499550 XM_499570 XM_499581 XR_000184 XR_000227 XR_000294	Genes with multiple seed matches: NM_001004355 NM_001009956 NM_001009960 NM_002725 NM_005338 NM_014661 NM_030655 NM_031461 NM_032874 NM_052900 NM_052988 NM_138494 NM_175063 NM_177427 NM_198123 NM_198124 NM_201348 NM_206538 XM_376207 XR_000184 XR_000294

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA