VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"cgauccauacugcggaacu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
884
.
Total Genes with multiple seed matches:
61
.
Genes with at least one seed match:
NM_000021 NM_000029 NM_000037 NM_000108 NM_000231 NM_000244 NM_000268 NM_000302 NM_000332 NM_000336 NM_000386 NM_000389 NM_000416 NM_000451 NM_000594 NM_000611 NM_000664 NM_000680 NM_000719 NM_000724 NM_000757 NM_000791 NM_000834 NM_000838 NM_001001188 NM_001001412 NM_001001556 NM_001001557 NM_001001698 NM_001001709 NM_001002231 NM_001002232 NM_001002257 NM_001002811 NM_001002812 NM_001002860 NM_001003801 NM_001003802 NM_001003812 NM_001004347 NM_001004351 NM_001005387 NM_001006600 NM_001006605 NM_001006665 NM_001007088 NM_001007278 NM_001008211 NM_001008212 NM_001008213 NM_001008224 NM_001008408 NM_001009553 NM_001009880 NM_001010924 NM_001011514 NM_001012339 NM_001012508 NM_001012626 NM_001012651 NM_001012981 NM_001013651 NM_001013675 NM_001013696 NM_001013697 NM_001014440 NM_001015886 NM_001017421 NM_001017967 NM_001017979 NM_001018050 NM_001018051 NM_001018052 NM_001018067 NM_001018068 NM_001018069 NM_001023562 NM_001023565 NM_001024401 NM_001024677 NM_001024683 NM_001025158 NM_001025159 NM_001025234 NM_001025235 NM_001025236 NM_001025237 NM_001025238 NM_001025239 NM_001065 NM_001224 NM_001232 NM_001234 NM_001287 NM_001296 NM_001304 NM_001326 NM_001420 NM_001457 NM_001466 NM_001570 NM_001606 NM_001716 NM_001913 NM_002006 NM_002015 NM_002037 NM_002044 NM_002064 NM_002210 NM_002228 NM_002318 NM_002437 NM_002460 NM_002481 NM_002501 NM_002516 NM_002531 NM_002697 NM_002699 NM_002709 NM_002773 NM_002816 NM_002953 NM_002959 NM_003038 NM_003048 NM_003078 NM_003165 NM_003188 NM_003236 NM_003247 NM_003248 NM_003271 NM_003274 NM_003277 NM_003328 NM_003392 NM_003399 NM_003475 NM_003496 NM_003507 NM_003520 NM_003575 NM_003592 NM_003655 NM_003714 NM_003727 NM_003740 NM_003764 NM_003792 NM_003799 NM_003804 NM_003820 NM_003885 NM_003924 NM_003941 NM_003950 NM_003955 NM_003981 NM_003985 NM_004030 NM_004093 NM_004112 NM_004254 NM_004259 NM_004281 NM_004355 NM_004360 NM_004364 NM_004414 NM_004473 NM_004474 NM_004480 NM_004520 NM_004566 NM_004567 NM_004573 NM_004583 NM_004630 NM_004635 NM_004687 NM_004703 NM_004708 NM_004730 NM_004747 NM_004781 NM_004796 NM_004842 NM_004868 NM_004926 NM_004991 NM_004992 NM_005030 NM_005069 NM_005076 NM_005112 NM_005185 NM_005197 NM_005202 NM_005214 NM_005254 NM_005343 NM_005393 NM_005455 NM_005479 NM_005509 NM_005537 NM_005551 NM_005647 NM_005782 NM_005786 NM_005798 NM_005801 NM_005817 NM_005851 NM_005892 NM_005907 NM_006013 NM_006045 NM_006106 NM_006129 NM_006132 NM_006315 NM_006325 NM_006361 NM_006375 NM_006449 NM_006517 NM_006520 NM_006549 NM_006658 NM_006783 NM_006876 NM_006962 NM_006988 NM_007084 NM_007202 NM_007203 NM_007277 NM_007318 NM_007335 NM_007336 NM_007338 NM_007353 NM_007374 NM_012102 NM_012104 NM_012156 NM_012188 NM_012208 NM_012264 NM_012280 NM_012301 NM_012315 NM_012318 NM_012346 NM_012384 NM_012400 NM_012405 NM_013243 NM_013291 NM_013390 NM_013393 NM_013396 NM_014028 NM_014077 NM_014112 NM_014153 NM_014183 NM_014212 NM_014246 NM_014275 NM_014294 NM_014346 NM_014364 NM_014505 NM_014553 NM_014555 NM_014601 NM_014632 NM_014634 NM_014646 NM_014702 NM_014732 NM_014755 NM_014772 NM_014792 NM_014801 NM_014828 NM_014862 NM_014902 NM_014906 NM_014914 NM_014937 NM_014974 NM_015025 NM_015052 NM_015064 NM_015166 NM_015178 NM_015194 NM_015245 NM_015264 NM_015266 NM_015286 NM_015310 NM_015347 NM_015353 NM_015385 NM_015433 NM_015449 NM_015542 NM_015564 NM_015575 NM_015640 NM_015644 NM_015657 NM_015689 NM_015691 NM_015855 NM_015898 NM_015995 NM_016061 NM_016081 NM_016114 NM_016151 NM_016169 NM_016176 NM_016202 NM_016233 NM_016337 NM_016340 NM_016353 NM_016377 NM_016418 NM_016426 NM_016463 NM_016538 NM_016547 NM_016553 NM_016654 NM_016936 NM_017420 NM_017433 NM_017491 NM_017554 NM_017555 NM_017592 NM_017637 NM_017664 NM_017793 NM_017807 NM_017811 NM_017849 NM_017881 NM_017928 NM_017943 NM_017979 NM_018003 NM_018036 NM_018090 NM_018110 NM_018119 NM_018176 NM_018201 NM_018283 NM_018300 NM_018302 NM_018340 NM_018450 NM_018472 NM_018695 NM_018712 NM_018715 NM_018941 NM_018992 NM_019098 NM_019106 NM_019885 NM_020150 NM_020190 NM_020198 NM_020213 NM_020214 NM_020247 NM_020335 NM_020452 NM_020475 NM_020476 NM_020477 NM_020478 NM_020479 NM_020480 NM_020481 NM_020630 NM_020698 NM_020714 NM_020728 NM_020778 NM_020808 NM_020895 NM_020899 NM_020925 NM_020933 NM_021076 NM_021117 NM_021132 NM_021174 NM_021195 NM_021638 NM_021914 NM_021945 NM_021960 NM_021980 NM_022066 NM_022094 NM_022308 NM_022465 NM_022468 NM_022718 NM_023034 NM_023088 NM_024039 NM_024040 NM_024050 NM_024086 NM_024594 NM_024624 NM_024633 NM_024653 NM_024723 NM_024736 NM_024769 NM_024804 NM_024813 NM_024816 NM_024830 NM_024893 NM_025090 NM_025158 NM_030569 NM_030643 NM_030651 NM_030665 NM_030758 NM_030798 NM_030805 NM_030808 NM_030920 NM_030927 NM_031289 NM_031309 NM_031427 NM_031434 NM_031475 NM_031921 NM_032019 NM_032023 NM_032037 NM_032105 NM_032175 NM_032236 NM_032256 NM_032281 NM_032296 NM_032300 NM_032508 NM_032515 NM_032536 NM_032569 NM_032683 NM_032689 NM_032793 NM_032812 NM_032814 NM_032817 NM_032826 NM_032837 NM_032849 NM_032853 NM_032892 NM_032966 NM_032983 NM_032984 NM_033025 NM_033089 NM_033129 NM_033259 NM_033337 NM_033364 NM_033404 NM_033409 NM_033449 NM_033510 NM_033513 NM_033656 NM_052811 NM_052847 NM_052906 NM_052978 NM_053286 NM_054013 NM_058167 NM_078467 NM_078469 NM_079834 NM_080599 NM_080671 NM_130446 NM_130468 NM_130760 NM_130761 NM_130762 NM_130771 NM_130783 NM_130799 NM_130800 NM_130801 NM_130802 NM_130803 NM_130804 NM_130807 NM_130809 NM_133168 NM_133169 NM_133175 NM_133176 NM_133373 NM_133451 NM_138280 NM_138338 NM_138426 NM_138433 NM_138479 NM_138566 NM_138633 NM_138638 NM_138740 NM_138958 NM_138967 NM_138970 NM_138971 NM_138972 NM_138973 NM_138983 NM_139028 NM_139161 NM_139199 NM_139202 NM_139278 NM_144604 NM_144769 NM_144991 NM_145008 NM_145065 NM_145068 NM_145173 NM_145248 NM_145271 NM_145331 NM_145332 NM_145333 NM_145646 NM_145654 NM_145660 NM_145728 NM_145807 NM_147150 NM_147193 NM_152235 NM_152247 NM_152253 NM_152287 NM_152307 NM_152339 NM_152346 NM_152378 NM_152380 NM_152383 NM_152447 NM_152510 NM_152622 NM_152684 NM_152694 NM_152744 NM_152777 NM_152891 NM_152913 NM_152939 NM_153013 NM_153020 NM_153033 NM_153047 NM_153048 NM_153211 NM_153217 NM_153237 NM_153239 NM_153244 NM_153246 NM_153247 NM_153360 NM_153443 NM_153499 NM_153500 NM_153620 NM_153639 NM_153685 NM_153718 NM_153719 NM_170705 NM_171982 NM_172211 NM_172216 NM_172226 NM_172375 NM_173076 NM_173470 NM_173477 NM_173507 NM_173551 NM_173633 NM_173667 NM_173674 NM_173681 NM_173805 NM_173832 NM_173847 NM_173851 NM_174871 NM_174882 NM_175064 NM_175711 NM_175736 NM_175747 NM_175875 NM_175908 NM_176795 NM_176815 NM_177434 NM_177439 NM_177442 NM_177953 NM_177978 NM_177979 NM_177996 NM_178026 NM_178037 NM_178038 NM_178039 NM_178040 NM_178145 NM_178154 NM_178155 NM_178156 NM_178157 NM_178470 NM_178516 NM_178526 NM_178544 NM_178557 NM_178835 NM_181355 NM_181430 NM_181500 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181846 NM_182314 NM_182505 NM_182507 NM_182533 NM_182551 NM_182562 NM_182584 NM_182586 NM_182687 NM_182700 NM_182740 NM_182763 NM_182924 NM_183006 NM_194071 NM_194283 NM_194290 NM_194310 NM_194315 NM_194316 NM_194457 NM_194458 NM_198074 NM_198075 NM_198217 NM_198218 NM_198219 NM_198330 NM_198394 NM_198488 NM_198554 NM_198595 NM_198686 NM_198797 NM_198835 NM_198900 NM_198956 NM_199163 NM_199205 NM_199247 NM_199248 NM_199413 NM_199414 NM_199427 NM_199461 NM_199464 NM_201399 NM_201434 NM_201565 NM_201570 NM_201571 NM_201572 NM_201590 NM_201593 NM_201596 NM_201597 NM_201995 NM_201998 NM_203329 NM_203330 NM_203331 NM_203353 NM_203400 NM_203417 NM_203418 NM_203445 NM_203453 NM_205855 NM_206817 NM_206818 NM_206834 NM_206876 NM_206877 NM_206902 NM_206914 NM_207009 NM_207115 NM_207313 NM_207383 NM_207419 NM_207451 NM_207462 NM_207484 NM_207510 NM_212464 NM_212467 NM_212533 NM_213590 NM_214677 NM_214678 NM_214679 XM_042936 XM_047357 XM_051081 XM_055866 XM_056455 XM_058931 XM_067585 XM_117014 XM_171855 XM_172917 XM_209163 XM_209363 XM_210048 XM_290809 XM_292160 XM_294743 XM_298151 XM_350880 XM_371179 XM_371423 XM_371474 XM_371801 XM_371943 XM_373433 XM_373500 XM_373695 XM_373765 XM_373786 XM_373906 XM_373922 XM_374035 XM_374108 XM_374460 XM_375602 XM_375928 XM_376018 XM_376051 XM_376062 XM_376558 XM_376658 XM_376720 XM_376869 XM_377073 XM_378202 XM_378236 XM_378327 XM_378358 XM_378368 XM_378398 XM_378546 XM_378620 XM_378756 XM_378861 XM_378883 XM_378957 XM_379065 XM_379243 XM_379327 XM_379409 XM_379459 XM_379520 XM_379535 XM_379541 XM_379650 XM_379717 XM_379730 XM_379858 XM_379897 XM_379967 XM_380146 XM_380160 XM_495902 XM_496335 XM_496623 XM_496690 XM_496782 XM_496892 XM_496894 XM_496898 XM_496899 XM_496905 XM_496912 XM_496943 XM_498440 XM_498441 XM_498457 XM_498474 XM_498511 XM_498513 XM_498596 XM_498646 XM_498649 XM_498673 XM_498824 XM_498855 XM_498882 XM_498894 XM_498914 XM_498917 XM_498954 XM_499314 XM_499317 XM_499321 XM_499328 XM_499330 XM_499333 XM_499338 XM_499348 XM_499354 XM_499356 XM_499570 XM_499571 XM_499586 XM_499602 XR_000216 XR_000265 XR_000268
Genes with multiple seed matches:
NM_000451 NM_000611 NM_001008408 NM_001009880 NM_001018050 NM_001018051 NM_001018052 NM_001025234 NM_001025235 NM_001025236 NM_001025237 NM_001025238 NM_001025239 NM_001304 NM_001716 NM_002531 NM_003271 NM_004583 NM_004992 NM_006361 NM_012208 NM_012315 NM_013396 NM_014246 NM_014772 NM_015264 NM_015266 NM_016547 NM_020335 NM_021174 NM_022468 NM_030665 NM_032515 NM_032966 NM_033129 NM_033259 NM_033449 NM_052906 NM_138338 NM_138426 NM_145068 NM_145646 NM_153033 NM_153211 NM_173470 NM_173477 NM_175736 NM_177442 NM_194310 NM_198900 NM_199205 NM_201434 NM_203329 NM_203330 NM_203331 NM_203445 XM_373906 XM_378236 XM_378398 XM_496335 XR_000268
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)