VIRsiRNAdb

Predicted off-targets seeds for siRNA "aaacuacuguuguuagacga" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :694.
Total Genes with multiple seed matches: 29.
Genes with at least one seed match: NM_000037 NM_000125 NM_000172 NM_000178 NM_000250 NM_000268 NM_000303 NM_000320 NM_000508 NM_000533 NM_000538 NM_000718 NM_000779 NM_000793 NM_000814 NM_000821 NM_000834 NM_000861 NM_000864 NM_000908 NM_000951 NM_001001188 NM_001001331 NM_001001681 NM_001001698 NM_001001700 NM_001001791 NM_001002762 NM_001003674 NM_001003675 NM_001003689 NM_001003891 NM_001004332 NM_001004433 NM_001005303 NM_001005356 NM_001005357 NM_001006641 NM_001006642 NM_001006643 NM_001007023 NM_001008234 NM_001008393 NM_001008493 NM_001008695 NM_001008696 NM_001009553 NM_001009913 NM_001009938 NM_001010898 NM_001010911 NM_001012393 NM_001012418 NM_001012424 NM_001012989 NM_001013415 NM_001013677 NM_001013687 NM_001013693 NM_001014380 NM_001015045 NM_001015048 NM_001015049 NM_001015051 NM_001015885 NM_001017424 NM_001017425 NM_001017929 NM_001018065 NM_001018066 NM_001018071 NM_001024401 NM_001024592 NM_001024611 NM_001024630 NM_001024631 NM_001024660 NM_001025094 NM_001025098 NM_001025100 NM_001025160 NM_001044 NM_001186 NM_001194 NM_001196 NM_001247 NM_001269 NM_001277 NM_001280 NM_001421 NM_001423 NM_001430 NM_001495 NM_001535 NM_001537 NM_001586 NM_001650 NM_001683 NM_001723 NM_001784 NM_001789 NM_001846 NM_002015 NM_002033 NM_002119 NM_002163 NM_002193 NM_002199 NM_002243 NM_002309 NM_002396 NM_002462 NM_002531 NM_002545 NM_002579 NM_002581 NM_002589 NM_002613 NM_002636 NM_002655 NM_002716 NM_002738 NM_002739 NM_002768 NM_002850 NM_002913 NM_002938 NM_002948 NM_003003 NM_003020 NM_003023 NM_003057 NM_003103 NM_003130 NM_003204 NM_003239 NM_003307 NM_003343 NM_003348 NM_003369 NM_003401 NM_003409 NM_003598 NM_003602 NM_003610 NM_003669 NM_003743 NM_003781 NM_003811 NM_003873 NM_003918 NM_003970 NM_003985 NM_004028 NM_004037 NM_004200 NM_004227 NM_004236 NM_004274 NM_004277 NM_004311 NM_004338 NM_004346 NM_004348 NM_004359 NM_004378 NM_004386 NM_004418 NM_004513 NM_004518 NM_004584 NM_004618 NM_004778 NM_004788 NM_004827 NM_004834 NM_004873 NM_005012 NM_005032 NM_005056 NM_005098 NM_005126 NM_005134 NM_005157 NM_005164 NM_005207 NM_005373 NM_005388 NM_005434 NM_005479 NM_005539 NM_005546 NM_005590 NM_005591 NM_005597 NM_005627 NM_005665 NM_005748 NM_005788 NM_005835 NM_005860 NM_005883 NM_005920 NM_005930 NM_006011 NM_006055 NM_006060 NM_006108 NM_006151 NM_006161 NM_006251 NM_006291 NM_006449 NM_006454 NM_006555 NM_006602 NM_006648 NM_006661 NM_006665 NM_006748 NM_006762 NM_006766 NM_006783 NM_006791 NM_006925 NM_006943 NM_006948 NM_007008 NM_007055 NM_007064 NM_007084 NM_007121 NM_007197 NM_007249 NM_007313 NM_007361 NM_012101 NM_012174 NM_012184 NM_012197 NM_012300 NM_012324 NM_013232 NM_013260 NM_013313 NM_013357 NM_013989 NM_014023 NM_014043 NM_014117 NM_014217 NM_014228 NM_014333 NM_014338 NM_014347 NM_014392 NM_014398 NM_014553 NM_014587 NM_014604 NM_014631 NM_014732 NM_014788 NM_014795 NM_014819 NM_014840 NM_014850 NM_014864 NM_014883 NM_014919 NM_014959 NM_015025 NM_015056 NM_015079 NM_015087 NM_015094 NM_015097 NM_015113 NM_015124 NM_015141 NM_015206 NM_015224 NM_015245 NM_015272 NM_015285 NM_015299 NM_015316 NM_015375 NM_015393 NM_015447 NM_015458 NM_015493 NM_015569 NM_015627 NM_015651 NM_015679 NM_015690 NM_015889 NM_015898 NM_016028 NM_016045 NM_016067 NM_016078 NM_016123 NM_016147 NM_016203 NM_016263 NM_016277 NM_016337 NM_016418 NM_016423 NM_016431 NM_016480 NM_016530 NM_016577 NM_016620 NM_016642 NM_016936 NM_017409 NM_017594 NM_017602 NM_017626 NM_017634 NM_017676 NM_017699 NM_017732 NM_017833 NM_017920 NM_018062 NM_018088 NM_018151 NM_018157 NM_018212 NM_018242 NM_018246 NM_018277 NM_018315 NM_018327 NM_018490 NM_018713 NM_018717 NM_018836 NM_018841 NM_018932 NM_018945 NM_019094 NM_019555 NM_019606 NM_020037 NM_020038 NM_020119 NM_020299 NM_020433 NM_020475 NM_020476 NM_020477 NM_020478 NM_020479 NM_020480 NM_020481 NM_020532 NM_020697 NM_020699 NM_020724 NM_020728 NM_020786 NM_020802 NM_020810 NM_020826 NM_020951 NM_021153 NM_021249 NM_021629 NM_021648 NM_021912 NM_021945 NM_021973 NM_022067 NM_022097 NM_022101 NM_022153 NM_022406 NM_022460 NM_022461 NM_022469 NM_022491 NM_022550 NM_022719 NM_022726 NM_022753 NM_022831 NM_022917 NM_022971 NM_023067 NM_024034 NM_024490 NM_024567 NM_024605 NM_024617 NM_024619 NM_024656 NM_024699 NM_024832 NM_024935 NM_024940 NM_025004 NM_030573 NM_030621 NM_030626 NM_030640 NM_030766 NM_030806 NM_030935 NM_031268 NM_031272 NM_031281 NM_031295 NM_031309 NM_031310 NM_031424 NM_031431 NM_031890 NM_031912 NM_031954 NM_032115 NM_032116 NM_032182 NM_032186 NM_032228 NM_032264 NM_032371 NM_032569 NM_032599 NM_032726 NM_032777 NM_032801 NM_032869 NM_032878 NM_032900 NM_032991 NM_033092 NM_033221 NM_033331 NM_033397 NM_033516 NM_033632 NM_033644 NM_033645 NM_052834 NM_052847 NM_052880 NM_052901 NM_052937 NM_052962 NM_054032 NM_058183 NM_058238 NM_078481 NM_080473 NM_080625 NM_080668 NM_080836 NM_080872 NM_130459 NM_130466 NM_130783 NM_130808 NM_130853 NM_130854 NM_130855 NM_133332 NM_133333 NM_133466 NM_133496 NM_138428 NM_138450 NM_138694 NM_138799 NM_138925 NM_138926 NM_138927 NM_139072 NM_139124 NM_139156 NM_139235 NM_139275 NM_139283 NM_144499 NM_144573 NM_144638 NM_145115 NM_145166 NM_145185 NM_145206 NM_145239 NM_145257 NM_145686 NM_145687 NM_147223 NM_147233 NM_148571 NM_148915 NM_152233 NM_152308 NM_152336 NM_152389 NM_152411 NM_152442 NM_152507 NM_152527 NM_152554 NM_152608 NM_152637 NM_152658 NM_152665 NM_152681 NM_152753 NM_152945 NM_153187 NM_153261 NM_153267 NM_153348 NM_153825 NM_153828 NM_170601 NM_170736 NM_170737 NM_172217 NM_173464 NM_173521 NM_173552 NM_173557 NM_173807 NM_174934 NM_175619 NM_176789 NM_177438 NM_178004 NM_178011 NM_178498 NM_178516 NM_178815 NM_181309 NM_181310 NM_181337 NM_181481 NM_181482 NM_181483 NM_181656 NM_181784 NM_181789 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182493 NM_182510 NM_182511 NM_182513 NM_182558 NM_182688 NM_183227 NM_183414 NM_183415 NM_197966 NM_197967 NM_198353 NM_198393 NM_198442 NM_198465 NM_198562 NM_198867 NM_198901 NM_198999 NM_199040 NM_199050 NM_199131 NM_199135 NM_199141 NM_199358 NM_199427 NM_199461 NM_199462 NM_199478 NM_201269 NM_201565 NM_201567 NM_203354 NM_203355 NM_203356 NM_203357 NM_203394 NM_203404 NM_205843 NM_205852 NM_205857 NM_206839 NM_206866 NM_206907 NM_206962 NM_207121 NM_207305 NM_207309 NM_207334 NM_207357 NM_207395 NM_207404 NM_207418 NM_207439 NM_207446 NM_207451 NM_207482 NM_207513 NM_207520 NM_207521 NM_212469 NM_213589 XM_034623 XM_038436 XM_039393 XM_047554 XM_048592 XM_056455 XM_059689 XM_085831 XM_091331 XM_168578 XM_211367 XM_290936 XM_291262 XM_294521 XM_370839 XM_371074 XM_371204 XM_371302 XM_371304 XM_372118 XM_372193 XM_372584 XM_373669 XM_373921 XM_374013 XM_374502 XM_375359 XM_375378 XM_375646 XM_375816 XM_376049 XM_377002 XM_378236 XM_378329 XM_378523 XM_378698 XM_378708 XM_378798 XM_378925 XM_379041 XM_379102 XM_379145 XM_379381 XM_379459 XM_379656 XM_379664 XM_379665 XM_379927 XM_495939 XM_496156 XM_496316 XM_496333 XM_496632 XM_497067 XM_498452 XM_498534 XM_498553 XM_498564 XM_498567 XM_498614 XM_498698 XM_498727 XM_498743 XM_498961 XM_498972 XM_499093 XM_499110 XM_499148 XM_499149 XM_499366 XM_499602 XR_000265	Genes with multiple seed matches: NM_000037 NM_000814 NM_001008493 NM_001015048 NM_001015049 NM_001024401 NM_003873 NM_004274 NM_004311 NM_004873 NM_005098 NM_006449 NM_006602 NM_007249 NM_015493 NM_015898 NM_018212 NM_018836 NM_020475 NM_020476 NM_020477 NM_021912 NM_032900 NM_052847 NM_080836 XM_294521 XM_372118 XM_499110 XM_499602

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA