VIRsiRNAdb

Predicted off-targets seeds for siRNA "ggcuagcugugaaagguccgu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :877.
Total Genes with multiple seed matches: 58.
Genes with at least one seed match: NM_000070 NM_000092 NM_000137 NM_000213 NM_000221 NM_000262 NM_000268 NM_000278 NM_000303 NM_000334 NM_000336 NM_000342 NM_000376 NM_000451 NM_000479 NM_000575 NM_000599 NM_000603 NM_000657 NM_000702 NM_000723 NM_000738 NM_000843 NM_000897 NM_000911 NM_000914 NM_000964 NM_001001132 NM_001001344 NM_001001418 NM_001001433 NM_001001434 NM_001001502 NM_001001557 NM_001001561 NM_001001563 NM_001001679 NM_001001691 NM_001001924 NM_001001925 NM_001001927 NM_001001931 NM_001001938 NM_001002861 NM_001003399 NM_001004067 NM_001004309 NM_001004316 NM_001004354 NM_001004355 NM_001004433 NM_001005619 NM_001005731 NM_001006115 NM_001006946 NM_001007097 NM_001007271 NM_001007274 NM_001007275 NM_001007466 NM_001007529 NM_001007546 NM_001008491 NM_001008492 NM_001008568 NM_001008569 NM_001008570 NM_001008571 NM_001010866 NM_001010883 NM_001010911 NM_001012267 NM_001012426 NM_001012427 NM_001012614 NM_001012651 NM_001012715 NM_001012717 NM_001012733 NM_001012734 NM_001012960 NM_001012966 NM_001013649 NM_001013652 NM_001013693 NM_001013701 NM_001013708 NM_001013723 NM_001013725 NM_001014440 NM_001015048 NM_001015049 NM_001017535 NM_001024216 NM_001024226 NM_001024227 NM_001024228 NM_001024401 NM_001024654 NM_001024668 NM_001024669 NM_001024670 NM_001024671 NM_001024674 NM_001025072 NM_001025073 NM_001079 NM_001190 NM_001261 NM_001303 NM_001323 NM_001328 NM_001332 NM_001380 NM_001386 NM_001451 NM_001457 NM_001497 NM_001532 NM_001560 NM_001658 NM_001671 NM_001699 NM_001781 NM_001804 NM_001806 NM_001816 NM_001830 NM_001886 NM_001894 NM_001897 NM_001907 NM_001962 NM_001975 NM_002023 NM_002111 NM_002243 NM_002248 NM_002249 NM_002251 NM_002359 NM_002428 NM_002475 NM_002484 NM_002522 NM_002558 NM_002651 NM_002667 NM_002695 NM_002836 NM_002923 NM_002926 NM_002942 NM_002959 NM_002975 NM_002997 NM_002999 NM_003004 NM_003015 NM_003085 NM_003086 NM_003119 NM_003178 NM_003204 NM_003255 NM_003313 NM_003382 NM_003422 NM_003458 NM_003486 NM_003498 NM_003575 NM_003633 NM_003648 NM_003683 NM_003724 NM_003749 NM_003755 NM_003763 NM_003815 NM_003853 NM_003856 NM_003872 NM_003881 NM_003938 NM_003950 NM_003987 NM_003988 NM_003989 NM_003990 NM_004036 NM_004074 NM_004090 NM_004110 NM_004142 NM_004148 NM_004157 NM_004174 NM_004186 NM_004204 NM_004227 NM_004309 NM_004319 NM_004335 NM_004359 NM_004404 NM_004409 NM_004416 NM_004430 NM_004445 NM_004474 NM_004481 NM_004482 NM_004503 NM_004518 NM_004564 NM_004602 NM_004624 NM_004666 NM_004667 NM_004714 NM_004729 NM_004730 NM_004742 NM_004745 NM_004756 NM_004862 NM_004873 NM_004913 NM_004914 NM_004928 NM_004959 NM_004992 NM_005026 NM_005054 NM_005069 NM_005124 NM_005144 NM_005184 NM_005187 NM_005281 NM_005326 NM_005402 NM_005427 NM_005491 NM_005506 NM_005511 NM_005539 NM_005547 NM_005583 NM_005672 NM_005714 NM_005801 NM_005831 NM_005840 NM_005883 NM_005904 NM_005920 NM_005957 NM_006005 NM_006013 NM_006019 NM_006053 NM_006132 NM_006133 NM_006155 NM_006202 NM_006224 NM_006226 NM_006262 NM_006291 NM_006306 NM_006319 NM_006321 NM_006453 NM_006455 NM_006462 NM_006480 NM_006481 NM_006483 NM_006484 NM_006488 NM_006557 NM_006591 NM_006612 NM_006618 NM_006673 NM_006705 NM_006742 NM_006764 NM_006856 NM_006925 NM_006943 NM_006989 NM_007008 NM_007014 NM_007030 NM_007065 NM_007084 NM_007118 NM_007229 NM_007331 NM_007353 NM_012069 NM_012079 NM_012133 NM_012204 NM_012218 NM_012264 NM_012279 NM_012307 NM_012309 NM_012393 NM_012458 NM_013231 NM_013252 NM_013345 NM_014011 NM_014068 NM_014157 NM_014164 NM_014222 NM_014275 NM_014286 NM_014287 NM_014291 NM_014405 NM_014427 NM_014556 NM_014562 NM_014583 NM_014604 NM_014616 NM_014635 NM_014759 NM_014762 NM_014767 NM_014844 NM_014848 NM_014850 NM_014901 NM_014906 NM_014916 NM_014935 NM_014948 NM_015078 NM_015101 NM_015111 NM_015124 NM_015205 NM_015215 NM_015229 NM_015245 NM_015254 NM_015266 NM_015318 NM_015321 NM_015332 NM_015368 NM_015381 NM_015393 NM_015401 NM_015412 NM_015416 NM_015429 NM_015453 NM_015481 NM_015490 NM_015833 NM_015834 NM_016018 NM_016147 NM_016224 NM_016418 NM_016488 NM_016526 NM_016540 NM_016547 NM_016596 NM_016611 NM_016734 NM_016735 NM_017436 NM_017447 NM_017451 NM_017452 NM_017453 NM_017454 NM_017540 NM_017550 NM_017556 NM_017723 NM_017732 NM_017758 NM_017806 NM_017891 NM_017921 NM_018006 NM_018146 NM_018181 NM_018195 NM_018207 NM_018322 NM_018667 NM_018941 NM_018974 NM_018984 NM_018992 NM_019001 NM_019032 NM_019594 NM_019843 NM_020064 NM_020132 NM_020133 NM_020148 NM_020170 NM_020215 NM_020245 NM_020384 NM_020415 NM_020429 NM_020437 NM_020443 NM_020462 NM_020531 NM_020532 NM_020655 NM_020664 NM_020713 NM_020745 NM_020749 NM_020761 NM_020768 NM_020773 NM_020795 NM_020836 NM_020845 NM_020946 NM_020956 NM_020972 NM_020988 NM_021079 NM_021116 NM_021149 NM_021215 NM_021240 NM_021267 NM_021612 NM_021643 NM_021646 NM_021784 NM_021813 NM_021913 NM_021949 NM_021951 NM_021953 NM_022042 NM_022081 NM_022085 NM_022137 NM_022164 NM_022363 NM_022490 NM_022493 NM_022834 NM_022912 NM_023018 NM_023076 NM_023110 NM_023932 NM_023940 NM_024043 NM_024085 NM_024103 NM_024342 NM_024344 NM_024408 NM_024417 NM_024492 NM_024507 NM_024512 NM_024548 NM_024577 NM_024657 NM_024667 NM_024676 NM_024701 NM_024750 NM_024757 NM_024906 NM_024907 NM_025021 NM_025026 NM_025045 NM_025079 NM_025084 NM_025149 NM_025195 NM_025237 NM_025248 NM_030622 NM_030651 NM_030806 NM_030810 NM_030930 NM_030948 NM_030962 NM_031227 NM_031228 NM_031229 NM_031283 NM_031427 NM_031449 NM_031945 NM_032023 NM_032042 NM_032153 NM_032189 NM_032207 NM_032242 NM_032266 NM_032287 NM_032310 NM_032342 NM_032349 NM_032352 NM_032370 NM_032451 NM_032529 NM_032559 NM_032647 NM_032680 NM_032711 NM_032795 NM_032831 NM_032868 NM_032910 NM_032933 NM_032957 NM_033049 NM_033129 NM_033130 NM_033131 NM_033262 NM_033315 NM_033348 NM_033387 NM_033393 NM_033420 NM_033455 NM_033456 NM_052842 NM_052847 NM_052864 NM_052876 NM_052878 NM_052919 NM_052933 NM_052970 NM_053286 NM_054013 NM_058175 NM_058182 NM_058240 NM_079834 NM_080388 NM_080473 NM_080605 NM_080749 NM_080789 NM_080790 NM_080827 NM_080836 NM_080840 NM_080841 NM_130807 NM_130830 NM_133334 NM_133443 NM_138287 NM_138358 NM_138401 NM_138435 NM_138457 NM_138479 NM_138632 NM_138790 NM_139028 NM_139162 NM_144507 NM_144599 NM_144723 NM_144779 NM_144949 NM_144997 NM_145045 NM_145113 NM_145185 NM_145245 NM_145270 NM_145275 NM_145285 NM_145306 NM_145347 NM_145348 NM_145349 NM_145350 NM_145351 NM_145727 NM_145752 NM_145912 NM_147134 NM_147161 NM_148169 NM_148886 NM_152221 NM_152264 NM_152272 NM_152346 NM_152384 NM_152493 NM_152643 NM_152754 NM_152840 NM_152841 NM_152842 NM_152879 NM_152988 NM_153031 NM_153043 NM_153211 NM_153247 NM_153273 NM_153320 NM_153442 NM_153636 NM_153675 NM_153693 NM_153717 NM_153812 NM_153828 NM_153832 NM_170736 NM_170737 NM_170782 NM_172020 NM_172229 NM_172239 NM_173087 NM_173088 NM_173089 NM_173090 NM_173459 NM_173476 NM_173614 NM_173626 NM_173644 NM_173660 NM_173661 NM_173669 NM_174911 NM_174925 NM_174929 NM_174947 NM_175607 NM_175612 NM_175620 NM_175898 NM_175902 NM_175931 NM_176084 NM_176085 NM_176086 NM_177401 NM_177938 NM_177939 NM_178004 NM_178013 NM_178120 NM_178145 NM_178500 NM_178836 NM_178865 NM_181349 NM_181453 NM_181521 NM_181533 NM_181552 NM_181701 NM_181706 NM_181717 NM_181814 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182509 NM_182534 NM_182570 NM_182584 NM_182616 NM_182760 NM_182932 NM_182933 NM_182936 NM_183002 NM_183010 NM_194303 NM_194317 NM_198055 NM_198075 NM_198138 NM_198321 NM_198402 NM_198478 NM_198491 NM_198501 NM_198565 NM_198681 NM_198851 NM_199121 NM_199265 NM_199296 NM_199415 NM_199424 NM_201266 NM_201279 NM_201520 NM_201546 NM_202002 NM_202003 NM_203293 NM_203294 NM_203295 NM_203296 NM_203297 NM_203304 NM_203305 NM_203374 NM_203400 NM_203422 NM_203481 NM_206539 NM_206817 NM_206818 NM_206855 NM_207191 NM_207194 NM_207195 NM_207196 NM_207197 NM_207362 NM_207381 NM_207387 NM_207395 NM_207405 NM_207419 NM_207444 NM_207480 NM_207483 NM_207484 NM_207502 NM_207519 NM_207520 NM_207521 NM_207644 NM_212464 NM_212465 NM_212467 NM_213613 XM_031104 XM_032996 XM_035601 XM_039627 XM_051017 XM_056455 XM_059689 XM_065166 XM_088679 XM_088680 XM_173132 XM_208312 XM_211088 XM_211805 XM_211908 XM_290401 XM_290546 XM_290842 XM_293380 XM_294802 XM_370607 XM_371179 XM_371286 XM_371488 XM_371691 XM_372267 XM_372420 XM_373561 XM_373914 XM_374141 XM_374270 XM_375275 XM_375292 XM_375373 XM_375378 XM_375449 XM_375456 XM_376567 XM_376602 XM_376680 XM_376784 XM_377041 XM_378178 XM_378399 XM_378473 XM_378487 XM_378549 XM_378606 XM_378786 XM_378843 XM_378855 XM_378908 XM_378914 XM_378957 XM_379023 XM_379029 XM_379459 XM_379634 XM_379664 XM_379665 XM_379774 XM_379780 XM_379820 XM_379840 XM_379877 XM_379934 XM_380103 XM_495888 XM_495939 XM_496134 XM_496335 XM_496351 XM_496581 XM_496889 XM_496895 XM_496983 XM_496984 XM_496985 XM_497002 XM_497160 XM_498557 XM_498587 XM_498695 XM_498739 XM_498861 XM_498933 XM_499084 XM_499114 XM_499169 XM_499170 XM_499312 XM_499323 XM_499362 XM_499539 XR_000184 XR_000190 XR_000263 XR_000266 XR_000268 XR_000275 XR_000294	Genes with multiple seed matches: NM_000278 NM_000334 NM_000603 NM_001003399 NM_001004354 NM_001006115 NM_001008568 NM_001008569 NM_001008570 NM_001008571 NM_001010866 NM_001024226 NM_001024227 NM_001024228 NM_001658 NM_002249 NM_003004 NM_003987 NM_003988 NM_003989 NM_003990 NM_004090 NM_004481 NM_004745 NM_005883 NM_007030 NM_007353 NM_014286 NM_014762 NM_015124 NM_016611 NM_020761 NM_020956 NM_021116 NM_022834 NM_025045 NM_032529 NM_033315 NM_052847 NM_052876 NM_133443 NM_153031 NM_153273 NM_170782 NM_173669 NM_175898 NM_182933 NM_198138 NM_198501 NM_199121 NM_201520 XM_035601 XM_065166 XM_371488 XM_373914 XM_379634 XM_379664 XM_379665

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA