VIRsiRNAdb

Predicted off-targets seeds for siRNA "cccgggaggucucguagac" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :864.
Total Genes with multiple seed matches: 48.
Genes with at least one seed match: NM_000046 NM_000077 NM_000114 NM_000134 NM_000170 NM_000176 NM_000248 NM_000261 NM_000278 NM_000320 NM_000533 NM_000569 NM_000570 NM_000609 NM_000611 NM_000671 NM_000681 NM_000814 NM_000837 NM_000845 NM_000916 NM_000962 NM_001001331 NM_001001344 NM_001001395 NM_001001418 NM_001001548 NM_001001549 NM_001001550 NM_001001555 NM_001001701 NM_001001870 NM_001001928 NM_001001929 NM_001001930 NM_001002814 NM_001003406 NM_001003407 NM_001003408 NM_001003800 NM_001003937 NM_001004067 NM_001004327 NM_001004348 NM_001005210 NM_001005366 NM_001005386 NM_001005388 NM_001005404 NM_001005414 NM_001008211 NM_001008212 NM_001008213 NM_001008222 NM_001008405 NM_001008493 NM_001008781 NM_001008925 NM_001009184 NM_001009614 NM_001009909 NM_001010852 NM_001010866 NM_001010925 NM_001010989 NM_001010990 NM_001011656 NM_001012651 NM_001012958 NM_001012960 NM_001013633 NM_001013698 NM_001013714 NM_001013723 NM_001014283 NM_001014436 NM_001014797 NM_001017405 NM_001017922 NM_001017926 NM_001017972 NM_001018003 NM_001018053 NM_001018074 NM_001018075 NM_001018076 NM_001018077 NM_001020818 NM_001020819 NM_001020820 NM_001020821 NM_001024094 NM_001024592 NM_001024808 NM_001025233 NM_001044 NM_001079 NM_001128 NM_001183 NM_001259 NM_001282 NM_001310 NM_001315 NM_001334 NM_001390 NM_001407 NM_001412 NM_001438 NM_001460 NM_001481 NM_001504 NM_001560 NM_001636 NM_001652 NM_001668 NM_001683 NM_001717 NM_001723 NM_001728 NM_001806 NM_001992 NM_001999 NM_002126 NM_002170 NM_002202 NM_002265 NM_002267 NM_002271 NM_002313 NM_002334 NM_002372 NM_002373 NM_002375 NM_002382 NM_002387 NM_002423 NM_002429 NM_002462 NM_002522 NM_002595 NM_002604 NM_002657 NM_002703 NM_002716 NM_002775 NM_002811 NM_002822 NM_002827 NM_002845 NM_002847 NM_002871 NM_002886 NM_002892 NM_002911 NM_002959 NM_003002 NM_003022 NM_003056 NM_003103 NM_003108 NM_003173 NM_003184 NM_003200 NM_003216 NM_003253 NM_003276 NM_003290 NM_003387 NM_003436 NM_003452 NM_003474 NM_003503 NM_003557 NM_003597 NM_003605 NM_003627 NM_003632 NM_003749 NM_003784 NM_003797 NM_003806 NM_003849 NM_003851 NM_003899 NM_003900 NM_003918 NM_003936 NM_003958 NM_003987 NM_003988 NM_003989 NM_003990 NM_004041 NM_004093 NM_004109 NM_004114 NM_004148 NM_004227 NM_004273 NM_004290 NM_004308 NM_004327 NM_004354 NM_004358 NM_004407 NM_004438 NM_004494 NM_004516 NM_004523 NM_004527 NM_004554 NM_004558 NM_004566 NM_004598 NM_004612 NM_004687 NM_004703 NM_004797 NM_004805 NM_004824 NM_004840 NM_004863 NM_004885 NM_004911 NM_004913 NM_004914 NM_004923 NM_004946 NM_004956 NM_005001 NM_005012 NM_005023 NM_005029 NM_005036 NM_005063 NM_005093 NM_005108 NM_005141 NM_005147 NM_005188 NM_005226 NM_005308 NM_005311 NM_005337 NM_005431 NM_005458 NM_005486 NM_005539 NM_005546 NM_005575 NM_005610 NM_005615 NM_005668 NM_005688 NM_005722 NM_005756 NM_005775 NM_005814 NM_005840 NM_005882 NM_005906 NM_005914 NM_005920 NM_005931 NM_005957 NM_006011 NM_006026 NM_006035 NM_006047 NM_006091 NM_006139 NM_006237 NM_006276 NM_006301 NM_006329 NM_006359 NM_006361 NM_006389 NM_006466 NM_006557 NM_006646 NM_006651 NM_006710 NM_006720 NM_006722 NM_006732 NM_006756 NM_006763 NM_006777 NM_006979 NM_006996 NM_007038 NM_007085 NM_007222 NM_007353 NM_012083 NM_012186 NM_012281 NM_012346 NM_012448 NM_012458 NM_012464 NM_013231 NM_013236 NM_013262 NM_013276 NM_013280 NM_013286 NM_013375 NM_013397 NM_013449 NM_013999 NM_014035 NM_014063 NM_014066 NM_014077 NM_014191 NM_014224 NM_014279 NM_014287 NM_014324 NM_014375 NM_014459 NM_014494 NM_014521 NM_014584 NM_014601 NM_014615 NM_014661 NM_014667 NM_014685 NM_014734 NM_014737 NM_014742 NM_014751 NM_014766 NM_014772 NM_014803 NM_014819 NM_014851 NM_014870 NM_014879 NM_014901 NM_014910 NM_014924 NM_014932 NM_015000 NM_015032 NM_015035 NM_015045 NM_015064 NM_015079 NM_015085 NM_015090 NM_015103 NM_015113 NM_015138 NM_015144 NM_015155 NM_015199 NM_015226 NM_015250 NM_015282 NM_015388 NM_015392 NM_015393 NM_015394 NM_015449 NM_015458 NM_015541 NM_015553 NM_015595 NM_015626 NM_015693 NM_015886 NM_015898 NM_016032 NM_016107 NM_016114 NM_016221 NM_016248 NM_016261 NM_016277 NM_016279 NM_016356 NM_016458 NM_016553 NM_016563 NM_016570 NM_016612 NM_016623 NM_017415 NM_017549 NM_017582 NM_017588 NM_017594 NM_017628 NM_017653 NM_017668 NM_017692 NM_017732 NM_017736 NM_017741 NM_017751 NM_017888 NM_017945 NM_017951 NM_018027 NM_018071 NM_018084 NM_018121 NM_018129 NM_018185 NM_018211 NM_018212 NM_018243 NM_018257 NM_018277 NM_018420 NM_018424 NM_018439 NM_018538 NM_018566 NM_018579 NM_018640 NM_018708 NM_018844 NM_018847 NM_018948 NM_018976 NM_019001 NM_019027 NM_019034 NM_019092 NM_019892 NM_020062 NM_020211 NM_020228 NM_020251 NM_020310 NM_020340 NM_020348 NM_020431 NM_020439 NM_020440 NM_020465 NM_020742 NM_020808 NM_020825 NM_020844 NM_020873 NM_020909 NM_020918 NM_020935 NM_020951 NM_020993 NM_020999 NM_021083 NM_021096 NM_021116 NM_021153 NM_021156 NM_021161 NM_021190 NM_021205 NM_021215 NM_021572 NM_021574 NM_021814 NM_021872 NM_021873 NM_021874 NM_021912 NM_021914 NM_021949 NM_021980 NM_022106 NM_022114 NM_022142 NM_022473 NM_022497 NM_022735 NM_022740 NM_022766 NM_022791 NM_022792 NM_022836 NM_022844 NM_022910 NM_022912 NM_022918 NM_023000 NM_023001 NM_023011 NM_023075 NM_023914 NM_024017 NM_024094 NM_024295 NM_024408 NM_024664 NM_024773 NM_024781 NM_024795 NM_024828 NM_024836 NM_024843 NM_024866 NM_024873 NM_024900 NM_024920 NM_024986 NM_024989 NM_025010 NM_025074 NM_025076 NM_025193 NM_030623 NM_030672 NM_030884 NM_030934 NM_031305 NM_031445 NM_031453 NM_031462 NM_032039 NM_032146 NM_032169 NM_032221 NM_032552 NM_032590 NM_032717 NM_032732 NM_032740 NM_032826 NM_032828 NM_032878 NM_032882 NM_032895 NM_032900 NM_032905 NM_032932 NM_032975 NM_032980 NM_033121 NM_033326 NM_033329 NM_033642 NM_052821 NM_052874 NM_052932 NM_052938 NM_052965 NM_052995 NM_053003 NM_053036 NM_053042 NM_053276 NM_053279 NM_053286 NM_054027 NM_054035 NM_058183 NM_058195 NM_058197 NM_078483 NM_080591 NM_080617 NM_080687 NM_080738 NM_080751 NM_080821 NM_130783 NM_130830 NM_130842 NM_130843 NM_133334 NM_133443 NM_133466 NM_133477 NM_133493 NM_133646 NM_134264 NM_134265 NM_138300 NM_138317 NM_138318 NM_138340 NM_138356 NM_138373 NM_138384 NM_138430 NM_138574 NM_138608 NM_138638 NM_138699 NM_138731 NM_138740 NM_138775 NM_138926 NM_138927 NM_139012 NM_139014 NM_139028 NM_139164 NM_139246 NM_139248 NM_139275 NM_144579 NM_144632 NM_144649 NM_144721 NM_144778 NM_144982 NM_145005 NM_145112 NM_145113 NM_145115 NM_145212 NM_145213 NM_145300 NM_145328 NM_145861 NM_152272 NM_152319 NM_152336 NM_152422 NM_152470 NM_152531 NM_152547 NM_152557 NM_152624 NM_152666 NM_152707 NM_152770 NM_152832 NM_152838 NM_152889 NM_152991 NM_153332 NM_153442 NM_153462 NM_153463 NM_153464 NM_153615 NM_153718 NM_153719 NM_153836 NM_170601 NM_170721 NM_170751 NM_170752 NM_170773 NM_170774 NM_172345 NM_173078 NM_173158 NM_173505 NM_173508 NM_173510 NM_173527 NM_173551 NM_173614 NM_173616 NM_173680 NM_173804 NM_173831 NM_173854 NM_173859 NM_174917 NM_174934 NM_174951 NM_174977 NM_175069 NM_175071 NM_175072 NM_175073 NM_175571 NM_175864 NM_175907 NM_175920 NM_176894 NM_177435 NM_177436 NM_177532 NM_177976 NM_177995 NM_178011 NM_178037 NM_178038 NM_178039 NM_178040 NM_178426 NM_178427 NM_178505 NM_178558 NM_178812 NM_178816 NM_178864 NM_181332 NM_181351 NM_181504 NM_181523 NM_181524 NM_181621 NM_181672 NM_181673 NM_181776 NM_182508 NM_182513 NM_182540 NM_182584 NM_182585 NM_182633 NM_182661 NM_182740 NM_182746 NM_182830 NM_182966 NM_182975 NM_183059 NM_183078 NM_183227 NM_183398 NM_183399 NM_183400 NM_183401 NM_194071 NM_194252 NM_194255 NM_194310 NM_197977 NM_198081 NM_198158 NM_198159 NM_198177 NM_198178 NM_198189 NM_198270 NM_198392 NM_198452 NM_198589 NM_198590 NM_198591 NM_198682 NM_198859 NM_198867 NM_198974 NM_199050 NM_199162 NM_199242 NM_199437 NM_199438 NM_199439 NM_199454 NM_199478 NM_201431 NM_201437 NM_201550 NM_203307 NM_203329 NM_203330 NM_203331 NM_203382 NM_203451 NM_205857 NM_206594 NM_206595 NM_207032 NM_207033 NM_207034 NM_207289 NM_207304 NM_207352 NM_207400 NM_207405 NM_207460 NM_207489 NM_207497 NM_207500 NM_207519 NM_207577 NM_212530 XM_028810 XM_032571 XM_032945 XM_044062 XM_051200 XM_058720 XM_059689 XM_059909 XM_084529 XM_087353 XM_166320 XM_208200 XM_209607 XM_294993 XM_370577 XM_370899 XM_370928 XM_371074 XM_371139 XM_371179 XM_371590 XM_371838 XM_373742 XM_373981 XM_374768 XM_375185 XM_375853 XM_376463 XM_376722 XM_376727 XM_376795 XM_378203 XM_378535 XM_378590 XM_378698 XM_378708 XM_378798 XM_379030 XM_379146 XM_379173 XM_379214 XM_379260 XM_379403 XM_379452 XM_379456 XM_379483 XM_379535 XM_379979 XM_380099 XM_380160 XM_495909 XM_496170 XM_496401 XM_496724 XM_496826 XM_497036 XM_498454 XM_498469 XM_498500 XM_498572 XM_498614 XM_498696 XM_498706 XM_498823 XM_498841 XM_498850 XM_498884 XM_498965 XM_499051 XM_499056 XM_499114 XM_499151 XM_499182 XM_499366 XM_499391 XM_499503 XM_499564 XM_499583 XR_000184 XR_000194 XR_000294	Genes with multiple seed matches: NM_000533 NM_001003406 NM_001003407 NM_001003408 NM_001005388 NM_001009909 NM_001010866 NM_001128 NM_001460 NM_002313 NM_002822 NM_002847 NM_003108 NM_003958 NM_004805 NM_005546 NM_006011 NM_006720 NM_013231 NM_013276 NM_015090 NM_015199 NM_015541 NM_015626 NM_018847 NM_019892 NM_020439 NM_020909 NM_021096 NM_032826 NM_053286 NM_130842 NM_130843 NM_134264 NM_134265 NM_139248 NM_152470 NM_174934 NM_182540 NM_183078 NM_194071 NM_198974 NM_199478 XM_376727 XM_378590 XM_379030 XM_379979 XM_498572

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA