VIRsiRNAdb

Predicted off-targets seeds for siRNA "aaacguaacaccaaccgucgc" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :458.
Total Genes with multiple seed matches: 23.
Genes with at least one seed match: NM_000151 NM_000409 NM_000620 NM_000632 NM_000663 NM_000674 NM_000675 NM_000799 NM_000878 NM_001001438 NM_001001699 NM_001001702 NM_001001704 NM_001003407 NM_001003408 NM_001003674 NM_001003675 NM_001003689 NM_001003809 NM_001004302 NM_001004342 NM_001005291 NM_001005388 NM_001005407 NM_001005611 NM_001006943 NM_001007277 NM_001007560 NM_001008528 NM_001010926 NM_001012426 NM_001012427 NM_001012511 NM_001012960 NM_001013633 NM_001013669 NM_001013693 NM_001013708 NM_001013726 NM_001017405 NM_001017440 NM_001018056 NM_001018065 NM_001018066 NM_001023587 NM_001024226 NM_001024227 NM_001024228 NM_001024610 NM_001024676 NM_001025076 NM_001025077 NM_001102 NM_001306 NM_001346 NM_001426 NM_001451 NM_001455 NM_001505 NM_001519 NM_001535 NM_001658 NM_001765 NM_001908 NM_001914 NM_002111 NM_002228 NM_002313 NM_002332 NM_002337 NM_002373 NM_002522 NM_002617 NM_002757 NM_002817 NM_002843 NM_002898 NM_003036 NM_003110 NM_003224 NM_003253 NM_003378 NM_003383 NM_003439 NM_003528 NM_003565 NM_003633 NM_003644 NM_003712 NM_003799 NM_003924 NM_004040 NM_004093 NM_004176 NM_004203 NM_004220 NM_004338 NM_004357 NM_004364 NM_004387 NM_004393 NM_004518 NM_004565 NM_004712 NM_004732 NM_004746 NM_004758 NM_004907 NM_004926 NM_004937 NM_005157 NM_005194 NM_005231 NM_005255 NM_005308 NM_005312 NM_005370 NM_005449 NM_005503 NM_005599 NM_005624 NM_005627 NM_005647 NM_005678 NM_005882 NM_005892 NM_005928 NM_006026 NM_006065 NM_006091 NM_006162 NM_006176 NM_006276 NM_006283 NM_006387 NM_006393 NM_006561 NM_006640 NM_006720 NM_006738 NM_006822 NM_006832 NM_006943 NM_006997 NM_007011 NM_007174 NM_007200 NM_007313 NM_007317 NM_007346 NM_012083 NM_012398 NM_013284 NM_014112 NM_014226 NM_014276 NM_014360 NM_014403 NM_014427 NM_014572 NM_014577 NM_014587 NM_014593 NM_014665 NM_014727 NM_014772 NM_014792 NM_014835 NM_014851 NM_014914 NM_014916 NM_014919 NM_015059 NM_015079 NM_015090 NM_015094 NM_015107 NM_015133 NM_015140 NM_015210 NM_015213 NM_015270 NM_015282 NM_015288 NM_015310 NM_015401 NM_015438 NM_015518 NM_015528 NM_015627 NM_015666 NM_015719 NM_015898 NM_015949 NM_016114 NM_016209 NM_016223 NM_016426 NM_016547 NM_016548 NM_016568 NM_016596 NM_016735 NM_017433 NM_017450 NM_017550 NM_017575 NM_017594 NM_017612 NM_017649 NM_017652 NM_017723 NM_017728 NM_017830 NM_017891 NM_018028 NM_018303 NM_018361 NM_018390 NM_018579 NM_018959 NM_019606 NM_019613 NM_020062 NM_020064 NM_020180 NM_020182 NM_020210 NM_020223 NM_020394 NM_020433 NM_020654 NM_020655 NM_020686 NM_020764 NM_020851 NM_020901 NM_020918 NM_020983 NM_021025 NM_021093 NM_021098 NM_021116 NM_021248 NM_021267 NM_021570 NM_021633 NM_022049 NM_022096 NM_022112 NM_022468 NM_022777 NM_022834 NM_023067 NM_024017 NM_024337 NM_024544 NM_024630 NM_024667 NM_024691 NM_024698 NM_024778 NM_024816 NM_024845 NM_024922 NM_025069 NM_025124 NM_030629 NM_030645 NM_030943 NM_031231 NM_031232 NM_031437 NM_031468 NM_031896 NM_031949 NM_032017 NM_032042 NM_032179 NM_032329 NM_032493 NM_032732 NM_032737 NM_032740 NM_032878 NM_033201 NM_033260 NM_033387 NM_033392 NM_033512 NM_052813 NM_052847 NM_052906 NM_052934 NM_053044 NM_057179 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133336 NM_133371 NM_133373 NM_133451 NM_134325 NM_138372 NM_138415 NM_138457 NM_138565 NM_139030 NM_144498 NM_144645 NM_144767 NM_145015 NM_145160 NM_145162 NM_145173 NM_145185 NM_145230 NM_145685 NM_145818 NM_146388 NM_147131 NM_147132 NM_147780 NM_147781 NM_147782 NM_147783 NM_148888 NM_152483 NM_152684 NM_152689 NM_152904 NM_152924 NM_152934 NM_153008 NM_153462 NM_153463 NM_153636 NM_153746 NM_153818 NM_156036 NM_170711 NM_170768 NM_172020 NM_172172 NM_172387 NM_172388 NM_172389 NM_173507 NM_173621 NM_173627 NM_173681 NM_173804 NM_175039 NM_175040 NM_175876 NM_175898 NM_175932 NM_177427 NM_177442 NM_177526 NM_177543 NM_177937 NM_178840 NM_181353 NM_181481 NM_181482 NM_181483 NM_181701 NM_181709 NM_181785 NM_182533 NM_182607 NM_182665 NM_182687 NM_183425 NM_194252 NM_194460 NM_198390 NM_198554 NM_198679 NM_198798 NM_198867 NM_198925 NM_199076 NM_199121 NM_199169 NM_199170 NM_199171 NM_199249 NM_199250 NM_201397 NM_201432 NM_201433 NM_201520 NM_201559 NM_201565 NM_203348 NM_203411 NM_206833 NM_206860 NM_206861 NM_206862 NM_206909 NM_206962 NM_207320 NM_207401 NM_207405 NM_207451 NM_207483 NM_207504 XM_032901 XM_065166 XM_168578 XM_171165 XM_290401 XM_291277 XM_371081 XM_373704 XM_373786 XM_373838 XM_374110 XM_374502 XM_374766 XM_375491 XM_375527 XM_375602 XM_375698 XM_378327 XM_378398 XM_378976 XM_379106 XM_379273 XM_379391 XM_379459 XM_379501 XM_379877 XM_380120 XM_380171 XM_495909 XM_495939 XM_496134 XM_496143 XM_496895 XM_498491 XM_498507 XM_498582 XM_498607 XM_498828 XM_498882 XM_498907 XM_499093 XM_499114 XM_499301 XM_499323 XR_000216	Genes with multiple seed matches: NM_002522 NM_004220 NM_005157 NM_006738 NM_007200 NM_007313 NM_014665 NM_015059 NM_015666 NM_020182 NM_032042 NM_144767 NM_156036 NM_173681 NM_175898 NM_199169 NM_199170 NM_199171 NM_207451 XM_379106 XM_379391 XM_498491 XM_499093

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA