VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"agguccgugagccgcuuga"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1490
.
Total Genes with multiple seed matches:
136
.
Genes with at least one seed match:
NM_000122 NM_000134 NM_000139 NM_000152 NM_000176 NM_000244 NM_000264 NM_000268 NM_000296 NM_000325 NM_000348 NM_000367 NM_000369 NM_000376 NM_000415 NM_000420 NM_000431 NM_000446 NM_000486 NM_000609 NM_000618 NM_000629 NM_000692 NM_000694 NM_000704 NM_000714 NM_000725 NM_000745 NM_000767 NM_000795 NM_000814 NM_000815 NM_000821 NM_000843 NM_000861 NM_000868 NM_000896 NM_000901 NM_000918 NM_000923 NM_000952 NM_000997 NM_001001331 NM_001001396 NM_001001548 NM_001001661 NM_001001664 NM_001001677 NM_001001680 NM_001001690 NM_001001704 NM_001001851 NM_001001873 NM_001001890 NM_001001927 NM_001001928 NM_001001929 NM_001001930 NM_001001938 NM_001002810 NM_001002814 NM_001002860 NM_001002912 NM_001002916 NM_001003665 NM_001003679 NM_001003715 NM_001003716 NM_001003794 NM_001003895 NM_001003941 NM_001004125 NM_001004320 NM_001004332 NM_001004336 NM_001004348 NM_001004441 NM_001004720 NM_001004722 NM_001005303 NM_001005502 NM_001005610 NM_001005612 NM_001005614 NM_001006115 NM_001006624 NM_001006625 NM_001006657 NM_001007094 NM_001007139 NM_001007258 NM_001007262 NM_001007271 NM_001007274 NM_001007275 NM_001007278 NM_001007466 NM_001007529 NM_001007543 NM_001008224 NM_001008228 NM_001008229 NM_001008408 NM_001008493 NM_001008539 NM_001008541 NM_001009551 NM_001009553 NM_001009584 NM_001009913 NM_001009944 NM_001010864 NM_001010867 NM_001010871 NM_001010913 NM_001010924 NM_001011540 NM_001011554 NM_001011708 NM_001012270 NM_001012271 NM_001012418 NM_001012426 NM_001012427 NM_001012614 NM_001012706 NM_001012753 NM_001012988 NM_001013404 NM_001013619 NM_001013667 NM_001013671 NM_001013675 NM_001013687 NM_001013701 NM_001013706 NM_001013719 NM_001013725 NM_001013726 NM_001013748 NM_001014283 NM_001014373 NM_001014374 NM_001014797 NM_001015002 NM_001015048 NM_001015049 NM_001015877 NM_001015886 NM_001017388 NM_001017430 NM_001017431 NM_001017535 NM_001017916 NM_001017917 NM_001017918 NM_001017967 NM_001017995 NM_001018051 NM_001018058 NM_001018074 NM_001018075 NM_001018076 NM_001018077 NM_001018089 NM_001018111 NM_001024094 NM_001024216 NM_001024226 NM_001024227 NM_001024228 NM_001024460 NM_001024592 NM_001024608 NM_001024676 NM_001024808 NM_001025160 NM_001082 NM_001167 NM_001168 NM_001189 NM_001218 NM_001261 NM_001304 NM_001326 NM_001328 NM_001347 NM_001362 NM_001375 NM_001387 NM_001390 NM_001397 NM_001410 NM_001419 NM_001440 NM_001491 NM_001505 NM_001535 NM_001544 NM_001556 NM_001560 NM_001619 NM_001631 NM_001632 NM_001638 NM_001658 NM_001668 NM_001680 NM_001683 NM_001684 NM_001742 NM_001748 NM_001754 NM_001784 NM_001831 NM_001859 NM_001865 NM_001874 NM_001908 NM_001915 NM_001918 NM_001936 NM_001958 NM_001969 NM_001981 NM_002006 NM_002017 NM_002028 NM_002052 NM_002061 NM_002074 NM_002076 NM_002086 NM_002103 NM_002111 NM_002149 NM_002163 NM_002196 NM_002224 NM_002226 NM_002229 NM_002254 NM_002314 NM_002359 NM_002375 NM_002433 NM_002461 NM_002469 NM_002477 NM_002481 NM_002483 NM_002513 NM_002518 NM_002531 NM_002553 NM_002570 NM_002581 NM_002596 NM_002604 NM_002613 NM_002625 NM_002648 NM_002654 NM_002666 NM_002707 NM_002718 NM_002725 NM_002740 NM_002744 NM_002773 NM_002861 NM_002875 NM_002914 NM_002945 NM_002989 NM_003002 NM_003042 NM_003046 NM_003108 NM_003119 NM_003146 NM_003150 NM_003178 NM_003189 NM_003227 NM_003258 NM_003278 NM_003281 NM_003290 NM_003317 NM_003343 NM_003347 NM_003379 NM_003400 NM_003404 NM_003421 NM_003439 NM_003477 NM_003483 NM_003498 NM_003528 NM_003559 NM_003581 NM_003603 NM_003605 NM_003617 NM_003636 NM_003644 NM_003648 NM_003657 NM_003681 NM_003683 NM_003693 NM_003707 NM_003733 NM_003791 NM_003831 NM_003874 NM_003891 NM_003913 NM_003929 NM_003939 NM_003949 NM_003950 NM_003954 NM_003965 NM_003966 NM_004004 NM_004104 NM_004114 NM_004207 NM_004285 NM_004302 NM_004335 NM_004350 NM_004363 NM_004367 NM_004370 NM_004371 NM_004376 NM_004383 NM_004401 NM_004423 NM_004482 NM_004486 NM_004494 NM_004500 NM_004518 NM_004565 NM_004567 NM_004586 NM_004588 NM_004630 NM_004656 NM_004680 NM_004697 NM_004711 NM_004729 NM_004735 NM_004742 NM_004745 NM_004804 NM_004808 NM_004814 NM_004822 NM_004823 NM_004824 NM_004840 NM_004850 NM_004860 NM_004863 NM_004873 NM_004922 NM_004938 NM_004948 NM_004992 NM_005036 NM_005044 NM_005047 NM_005054 NM_005116 NM_005149 NM_005168 NM_005186 NM_005188 NM_005189 NM_005219 NM_005238 NM_005257 NM_005312 NM_005336 NM_005397 NM_005432 NM_005540 NM_005562 NM_005574 NM_005578 NM_005584 NM_005597 NM_005632 NM_005699 NM_005704 NM_005776 NM_005789 NM_005798 NM_005810 NM_005816 NM_005897 NM_005902 NM_005955 NM_005957 NM_005962 NM_005969 NM_005972 NM_005996 NM_005999 NM_006018 NM_006071 NM_006072 NM_006089 NM_006134 NM_006139 NM_006161 NM_006167 NM_006202 NM_006213 NM_006257 NM_006282 NM_006319 NM_006323 NM_006336 NM_006359 NM_006366 NM_006372 NM_006403 NM_006454 NM_006455 NM_006465 NM_006474 NM_006549 NM_006555 NM_006578 NM_006646 NM_006669 NM_006671 NM_006675 NM_006693 NM_006710 NM_006736 NM_006743 NM_006775 NM_006780 NM_006844 NM_006869 NM_006931 NM_006989 NM_006991 NM_006996 NM_006999 NM_007002 NM_007006 NM_007007 NM_007011 NM_007028 NM_007039 NM_007084 NM_007110 NM_007126 NM_007129 NM_007139 NM_007159 NM_007189 NM_007219 NM_007224 NM_007283 NM_007306 NM_012083 NM_012087 NM_012140 NM_012144 NM_012232 NM_012252 NM_012288 NM_012306 NM_012316 NM_012323 NM_012324 NM_012331 NM_012332 NM_013254 NM_013257 NM_013261 NM_013276 NM_013301 NM_013341 NM_013371 NM_013399 NM_013402 NM_013437 NM_013440 NM_013943 NM_014005 NM_014048 NM_014178 NM_014183 NM_014216 NM_014235 NM_014240 NM_014252 NM_014268 NM_014298 NM_014310 NM_014314 NM_014388 NM_014396 NM_014400 NM_014494 NM_014583 NM_014586 NM_014587 NM_014613 NM_014616 NM_014630 NM_014647 NM_014674 NM_014686 NM_014694 NM_014729 NM_014731 NM_014770 NM_014772 NM_014773 NM_014789 NM_014797 NM_014808 NM_014851 NM_014864 NM_014872 NM_014875 NM_014891 NM_014899 NM_014902 NM_014909 NM_014919 NM_014924 NM_014948 NM_014951 NM_014953 NM_014965 NM_014994 NM_015015 NM_015033 NM_015044 NM_015064 NM_015101 NM_015103 NM_015113 NM_015155 NM_015166 NM_015192 NM_015231 NM_015239 NM_015270 NM_015288 NM_015318 NM_015353 NM_015369 NM_015374 NM_015375 NM_015381 NM_015391 NM_015464 NM_015493 NM_015530 NM_015557 NM_015570 NM_015577 NM_015584 NM_015627 NM_015680 NM_015695 NM_015717 NM_015892 NM_015995 NM_016002 NM_016021 NM_016056 NM_016084 NM_016094 NM_016114 NM_016194 NM_016243 NM_016263 NM_016297 NM_016322 NM_016362 NM_016363 NM_016376 NM_016400 NM_016418 NM_016431 NM_016433 NM_016507 NM_016526 NM_016546 NM_016551 NM_016562 NM_016569 NM_016574 NM_016647 NM_016735 NM_016937 NM_017409 NM_017438 NM_017523 NM_017556 NM_017614 NM_017638 NM_017684 NM_017723 NM_017763 NM_017770 NM_017773 NM_017778 NM_017789 NM_017801 NM_017815 NM_017831 NM_017861 NM_017896 NM_017919 NM_017925 NM_017968 NM_017980 NM_017999 NM_018003 NM_018049 NM_018059 NM_018066 NM_018068 NM_018097 NM_018121 NM_018129 NM_018134 NM_018152 NM_018176 NM_018185 NM_018198 NM_018201 NM_018212 NM_018235 NM_018243 NM_018306 NM_018308 NM_018316 NM_018332 NM_018347 NM_018376 NM_018389 NM_018390 NM_018399 NM_018441 NM_018469 NM_018534 NM_018561 NM_018566 NM_018579 NM_018641 NM_018656 NM_018660 NM_018671 NM_018683 NM_018690 NM_018706 NM_018712 NM_018891 NM_018945 NM_018947 NM_018999 NM_019007 NM_019009 NM_019020 NM_019027 NM_019062 NM_019081 NM_019084 NM_019085 NM_019094 NM_019119 NM_019594 NM_019604 NM_019855 NM_020126 NM_020132 NM_020162 NM_020185 NM_020201 NM_020245 NM_020335 NM_020340 NM_020348 NM_020398 NM_020405 NM_020428 NM_020452 NM_020456 NM_020642 NM_020655 NM_020661 NM_020708 NM_020727 NM_020745 NM_020779 NM_020786 NM_020813 NM_020821 NM_020844 NM_020858 NM_020897 NM_020956 NM_020983 NM_020993 NM_021029 NM_021036 NM_021069 NM_021095 NM_021107 NM_021138 NM_021181 NM_021189 NM_021200 NM_021218 NM_021235 NM_021267 NM_021603 NM_021638 NM_021652 NM_021818 NM_021820 NM_021912 NM_021916 NM_021945 NM_022063 NM_022067 NM_022078 NM_022080 NM_022103 NM_022123 NM_022130 NM_022359 NM_022377 NM_022459 NM_022473 NM_022491 NM_022568 NM_022644 NM_022744 NM_022753 NM_022761 NM_022766 NM_022787 NM_022829 NM_022895 NM_022898 NM_023002 NM_023018 NM_023067 NM_023071 NM_023076 NM_023946 NM_024017 NM_024026 NM_024068 NM_024071 NM_024081 NM_024085 NM_024086 NM_024095 NM_024105 NM_024111 NM_024293 NM_024298 NM_024301 NM_024311 NM_024421 NM_024511 NM_024512 NM_024527 NM_024561 NM_024588 NM_024592 NM_024611 NM_024627 NM_024630 NM_024633 NM_024646 NM_024653 NM_024677 NM_024709 NM_024718 NM_024721 NM_024735 NM_024745 NM_024750 NM_024770 NM_024771 NM_024816 NM_024825 NM_024830 NM_024877 NM_024886 NM_024906 NM_024910 NM_024922 NM_025002 NM_025030 NM_025042 NM_025049 NM_025092 NM_025108 NM_025136 NM_025140 NM_025147 NM_025164 NM_025193 NM_025196 NM_025203 NM_025230 NM_025250 NM_025263 NM_030569 NM_030579 NM_030764 NM_030774 NM_030806 NM_030821 NM_030884 NM_030956 NM_030968 NM_030980 NM_031268 NM_031304 NM_031306 NM_031314 NM_031409 NM_031434 NM_031445 NM_031462 NM_031463 NM_031481 NM_031484 NM_031908 NM_031912 NM_031943 NM_031965 NM_032012 NM_032048 NM_032105 NM_032153 NM_032167 NM_032227 NM_032271 NM_032296 NM_032307 NM_032336 NM_032369 NM_032374 NM_032376 NM_032414 NM_032446 NM_032448 NM_032451 NM_032458 NM_032493 NM_032515 NM_032552 NM_032554 NM_032706 NM_032711 NM_032727 NM_032740 NM_032750 NM_032792 NM_032794 NM_032811 NM_032817 NM_032826 NM_032855 NM_032863 NM_032883 NM_032898 NM_032920 NM_032933 NM_032975 NM_032980 NM_033017 NM_033025 NM_033049 NM_033086 NM_033090 NM_033091 NM_033129 NM_033133 NM_033141 NM_033161 NM_033211 NM_033240 NM_033244 NM_033245 NM_033257 NM_033274 NM_033304 NM_033362 NM_033363 NM_033405 NM_033407 NM_033505 NM_033512 NM_033542 NM_033637 NM_033642 NM_052811 NM_052816 NM_052840 NM_052858 NM_052906 NM_052916 NM_052931 NM_052932 NM_052941 NM_052954 NM_053280 NM_054016 NM_054110 NM_057175 NM_058182 NM_058189 NM_058219 NM_078470 NM_078481 NM_078625 NM_078628 NM_080552 NM_080605 NM_080627 NM_080645 NM_080659 NM_080738 NM_080764 NM_080821 NM_080825 NM_130439 NM_130797 NM_130799 NM_130800 NM_130801 NM_130802 NM_130803 NM_130804 NM_133177 NM_133178 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133336 NM_133444 NM_133451 NM_133452 NM_133487 NM_134421 NM_138319 NM_138347 NM_138350 NM_138356 NM_138357 NM_138358 NM_138400 NM_138450 NM_138454 NM_138457 NM_138468 NM_138573 NM_138576 NM_138620 NM_138640 NM_138726 NM_138774 NM_138801 NM_139124 NM_139159 NM_139202 NM_139207 NM_139276 NM_139323 NM_144586 NM_144599 NM_144613 NM_144618 NM_144632 NM_144682 NM_144687 NM_144706 NM_144721 NM_144964 NM_144968 NM_145013 NM_145039 NM_145041 NM_145049 NM_145064 NM_145071 NM_145159 NM_145165 NM_145167 NM_145185 NM_145270 NM_145279 NM_145280 NM_145285 NM_145296 NM_145298 NM_145311 NM_145349 NM_145350 NM_145351 NM_145352 NM_145648 NM_145649 NM_145655 NM_145693 NM_145735 NM_145752 NM_145861 NM_145906 NM_145913 NM_146388 NM_147780 NM_147781 NM_147782 NM_147783 NM_148171 NM_148960 NM_152257 NM_152280 NM_152284 NM_152361 NM_152362 NM_152363 NM_152406 NM_152440 NM_152462 NM_152473 NM_152483 NM_152487 NM_152506 NM_152509 NM_152529 NM_152544 NM_152579 NM_152622 NM_152626 NM_152636 NM_152731 NM_152763 NM_152769 NM_152793 NM_152832 NM_152878 NM_152879 NM_152924 NM_153008 NM_153031 NM_153032 NM_153035 NM_153045 NM_153239 NM_153240 NM_153260 NM_153270 NM_153273 NM_153338 NM_153350 NM_153365 NM_153367 NM_153375 NM_153426 NM_153427 NM_153442 NM_153449 NM_153487 NM_153499 NM_153500 NM_153611 NM_153616 NM_153617 NM_153618 NM_153619 NM_153746 NM_153758 NM_170665 NM_170707 NM_170708 NM_170709 NM_170710 NM_170751 NM_170752 NM_170771 NM_172130 NM_172196 NM_172216 NM_172226 NM_172367 NM_173042 NM_173043 NM_173044 NM_173074 NM_173079 NM_173354 NM_173464 NM_173484 NM_173509 NM_173512 NM_173527 NM_173547 NM_173566 NM_173580 NM_173597 NM_173676 NM_173681 NM_173795 NM_173808 NM_173827 NM_173832 NM_174892 NM_174919 NM_174977 NM_175047 NM_175573 NM_175736 NM_175923 NM_176786 NM_176816 NM_176853 NM_176863 NM_177435 NM_177458 NM_177532 NM_177550 NM_177551 NM_177953 NM_177977 NM_177983 NM_178025 NM_178037 NM_178038 NM_178039 NM_178040 NM_178238 NM_178336 NM_178426 NM_178427 NM_178448 NM_178509 NM_178523 NM_178526 NM_178550 NM_178557 NM_178814 NM_178841 NM_180981 NM_180982 NM_181265 NM_181304 NM_181305 NM_181306 NM_181307 NM_181351 NM_181353 NM_181357 NM_181457 NM_181471 NM_181489 NM_181502 NM_181701 NM_181706 NM_181707 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181897 NM_182470 NM_182471 NM_182487 NM_182500 NM_182580 NM_182584 NM_182607 NM_182612 NM_182631 NM_182661 NM_182686 NM_182688 NM_182734 NM_182752 NM_182760 NM_182765 NM_182804 NM_182832 NM_182903 NM_183004 NM_183006 NM_194071 NM_194284 NM_194290 NM_194460 NM_197956 NM_197964 NM_198066 NM_198080 NM_198150 NM_198157 NM_198189 NM_198196 NM_198213 NM_198320 NM_198389 NM_198457 NM_198461 NM_198465 NM_198484 NM_198486 NM_198488 NM_198501 NM_198545 NM_198549 NM_198593 NM_198594 NM_198595 NM_198597 NM_198679 NM_198686 NM_198900 NM_198935 NM_199040 NM_199050 NM_199123 NM_199124 NM_199139 NM_199294 NM_199295 NM_199415 NM_199461 NM_199462 NM_201267 NM_201280 NM_201348 NM_201403 NM_201431 NM_201432 NM_201433 NM_203304 NM_203327 NM_203339 NM_203346 NM_203364 NM_203395 NM_203413 NM_203422 NM_203452 NM_203453 NM_203506 NM_205843 NM_206809 NM_206810 NM_206811 NM_206812 NM_206813 NM_206814 NM_206835 NM_206855 NM_206908 NM_206912 NM_206925 NM_206962 NM_207320 NM_207348 NM_207351 NM_207366 NM_207391 NM_207412 NM_207442 NM_207448 NM_207453 NM_207458 NM_207478 NM_207489 NM_207504 NM_207505 NM_207582 NM_207644 NM_207672 NM_212464 NM_212502 NM_212503 NM_212556 NM_213566 NM_213590 NM_213606 NM_213612 NM_213662 XM_028217 XM_032901 XM_032945 XM_032996 XM_038150 XM_039393 XM_042833 XM_042936 XM_047610 XM_058628 XM_063871 XM_084852 XM_113763 XM_117117 XM_166320 XM_167044 XM_208438 XM_208835 XM_209363 XM_209607 XM_290540 XM_290597 XM_292779 XM_370648 XM_370665 XM_370756 XM_371074 XM_371184 XM_371286 XM_371486 XM_371684 XM_371851 XM_372035 XM_372193 XM_372198 XM_372626 XM_372723 XM_373500 XM_373561 XM_373765 XM_373881 XM_373909 XM_373922 XM_374001 XM_374086 XM_374099 XM_374249 XM_374317 XM_374341 XM_374781 XM_374915 XM_374976 XM_375272 XM_375292 XM_375424 XM_375646 XM_375698 XM_376189 XM_376278 XM_376372 XM_376522 XM_376588 XM_376602 XM_376720 XM_377002 XM_378238 XM_378273 XM_378321 XM_378360 XM_378456 XM_378462 XM_378529 XM_378639 XM_378660 XM_378678 XM_378692 XM_378701 XM_378730 XM_378735 XM_378786 XM_378914 XM_378957 XM_378964 XM_378971 XM_379006 XM_379029 XM_379041 XM_379065 XM_379075 XM_379086 XM_379096 XM_379100 XM_379154 XM_379231 XM_379359 XM_379458 XM_379459 XM_379482 XM_379510 XM_379534 XM_379582 XM_379597 XM_379696 XM_379800 XM_379820 XM_379927 XM_379967 XM_380098 XM_380103 XM_380131 XM_380159 XM_380175 XM_495860 XM_495888 XM_495908 XM_495909 XM_496037 XM_496041 XM_496044 XM_496093 XM_496134 XM_496155 XM_496349 XM_496351 XM_496635 XM_496724 XM_496889 XM_496950 XM_497080 XM_498421 XM_498442 XM_498445 XM_498454 XM_498479 XM_498484 XM_498511 XM_498513 XM_498614 XM_498646 XM_498656 XM_498687 XM_498736 XM_498737 XM_498825 XM_498835 XM_498852 XM_498857 XM_498884 XM_498894 XM_498902 XM_498917 XM_499047 XM_499070 XM_499147 XM_499155 XM_499183 XM_499185 XM_499265 XM_499312 XM_499362 XM_499364 XM_499502 XM_499514 XM_499523 XM_499572 XM_499575 XM_499583 XM_499602 XR_000190 XR_000268 XR_000269 XR_000275
Genes with multiple seed matches:
NM_000369 NM_000896 NM_000901 NM_000997 NM_001001661 NM_001001928 NM_001001929 NM_001001930 NM_001004125 NM_001005502 NM_001008408 NM_001008539 NM_001010867 NM_001013667 NM_001013726 NM_001167 NM_001362 NM_001748 NM_001874 NM_001908 NM_002061 NM_002224 NM_002604 NM_002725 NM_003046 NM_003404 NM_003681 NM_003874 NM_003950 NM_004285 NM_004711 NM_004729 NM_005036 NM_005149 NM_005897 NM_006675 NM_006736 NM_006931 NM_012288 NM_012306 NM_012324 NM_014674 NM_014686 NM_014770 NM_014851 NM_014924 NM_014953 NM_014994 NM_015064 NM_015995 NM_016114 NM_016431 NM_017638 NM_017999 NM_018566 NM_018579 NM_018706 NM_018945 NM_019094 NM_020745 NM_021036 NM_021138 NM_021200 NM_021267 NM_022787 NM_023076 NM_024592 NM_024770 NM_024771 NM_024886 NM_024910 NM_024922 NM_025042 NM_025049 NM_025230 NM_030569 NM_031462 NM_032493 NM_032552 NM_032792 NM_032817 NM_052906 NM_138450 NM_139124 NM_139323 NM_144618 NM_147780 NM_147781 NM_147782 NM_147783 NM_148960 NM_152257 NM_152361 NM_152362 NM_152529 NM_152793 NM_153008 NM_153350 NM_153487 NM_153611 NM_170665 NM_173547 NM_173580 NM_175736 NM_178037 NM_178038 NM_178039 NM_178040 NM_181357 NM_182752 NM_198320 NM_198549 NM_198900 NM_199040 NM_201348 NM_207672 XM_039393 XM_047610 XM_371486 XM_373765 XM_374086 XM_374781 XM_376588 XM_379041 XM_379065 XM_379154 XM_379800 XM_379927 XM_380103 XM_496093 XM_496134 XM_496889 XM_499047 XM_499312 XM_499362 XR_000190
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)