VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gucaauaugcuaaaacgcg"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1346
.
Total Genes with multiple seed matches:
77
.
Genes with at least one seed match:
NM_000153 NM_000156 NM_000182 NM_000187 NM_000210 NM_000216 NM_000220 NM_000230 NM_000231 NM_000243 NM_000246 NM_000268 NM_000320 NM_000337 NM_000362 NM_000368 NM_000448 NM_000455 NM_000497 NM_000503 NM_000522 NM_000528 NM_000530 NM_000573 NM_000594 NM_000603 NM_000618 NM_000623 NM_000651 NM_000686 NM_000690 NM_000705 NM_000721 NM_000726 NM_000734 NM_000740 NM_000793 NM_000813 NM_000817 NM_000827 NM_000908 NM_000916 NM_000953 NM_000963 NM_000964 NM_000983 NM_000991 NM_001001331 NM_001001524 NM_001001549 NM_001001550 NM_001001555 NM_001001557 NM_001001664 NM_001001675 NM_001001681 NM_001001684 NM_001001687 NM_001001698 NM_001002244 NM_001002245 NM_001002246 NM_001002247 NM_001002248 NM_001002249 NM_001002295 NM_001002811 NM_001002812 NM_001003406 NM_001003665 NM_001003715 NM_001003716 NM_001003800 NM_001003895 NM_001004019 NM_001004106 NM_001004285 NM_001004286 NM_001004302 NM_001004305 NM_001004345 NM_001005335 NM_001005388 NM_001005414 NM_001005463 NM_001005609 NM_001005737 NM_001005746 NM_001005747 NM_001005766 NM_001005910 NM_001005911 NM_001005912 NM_001005913 NM_001005914 NM_001005920 NM_001006113 NM_001006634 NM_001006636 NM_001006656 NM_001007023 NM_001007097 NM_001007214 NM_001007225 NM_001007255 NM_001008223 NM_001008493 NM_001008544 NM_001008658 NM_001008742 NM_001009553 NM_001009554 NM_001009569 NM_001009611 NM_001009932 NM_001009933 NM_001009934 NM_001009998 NM_001010000 NM_001010867 NM_001010890 NM_001010897 NM_001010911 NM_001010915 NM_001011540 NM_001011545 NM_001011666 NM_001012267 NM_001012651 NM_001012761 NM_001012964 NM_001012965 NM_001012966 NM_001012982 NM_001013407 NM_001013677 NM_001013678 NM_001013687 NM_001013695 NM_001013707 NM_001013710 NM_001013712 NM_001013723 NM_001013726 NM_001015048 NM_001015049 NM_001015886 NM_001017368 NM_001017405 NM_001017420 NM_001017915 NM_001017989 NM_001017995 NM_001018029 NM_001018060 NM_001018065 NM_001018066 NM_001018097 NM_001018111 NM_001023565 NM_001024649 NM_001024660 NM_001024676 NM_001024688 NM_001024732 NM_001024809 NM_001024858 NM_001025 NM_001025077 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001025108 NM_001025193 NM_001092 NM_001116 NM_001148 NM_001153 NM_001155 NM_001167 NM_001183 NM_001206 NM_001319 NM_001326 NM_001333 NM_001356 NM_001361 NM_001383 NM_001399 NM_001419 NM_001426 NM_001457 NM_001533 NM_001539 NM_001563 NM_001608 NM_001620 NM_001634 NM_001650 NM_001683 NM_001720 NM_001730 NM_001746 NM_001858 NM_001864 NM_001936 NM_001949 NM_001961 NM_001993 NM_001998 NM_002016 NM_002051 NM_002082 NM_002170 NM_002202 NM_002213 NM_002265 NM_002271 NM_002285 NM_002309 NM_002357 NM_002385 NM_002430 NM_002469 NM_002485 NM_002499 NM_002501 NM_002517 NM_002531 NM_002582 NM_002595 NM_002616 NM_002648 NM_002695 NM_002736 NM_002774 NM_002828 NM_002841 NM_002847 NM_002848 NM_002861 NM_002879 NM_002886 NM_002903 NM_002933 NM_002939 NM_002957 NM_003002 NM_003003 NM_003018 NM_003029 NM_003043 NM_003045 NM_003072 NM_003084 NM_003088 NM_003107 NM_003108 NM_003118 NM_003181 NM_003190 NM_003221 NM_003240 NM_003247 NM_003281 NM_003283 NM_003290 NM_003317 NM_003382 NM_003439 NM_003479 NM_003483 NM_003490 NM_003512 NM_003549 NM_003607 NM_003617 NM_003627 NM_003629 NM_003640 NM_003648 NM_003657 NM_003709 NM_003728 NM_003749 NM_003764 NM_003774 NM_003800 NM_003807 NM_003834 NM_003835 NM_003836 NM_003841 NM_003879 NM_003918 NM_003953 NM_004028 NM_004033 NM_004058 NM_004079 NM_004090 NM_004092 NM_004129 NM_004205 NM_004227 NM_004262 NM_004273 NM_004275 NM_004321 NM_004327 NM_004339 NM_004349 NM_004350 NM_004358 NM_004368 NM_004394 NM_004412 NM_004432 NM_004442 NM_004485 NM_004502 NM_004518 NM_004593 NM_004636 NM_004641 NM_004649 NM_004674 NM_004680 NM_004689 NM_004712 NM_004729 NM_004730 NM_004745 NM_004761 NM_004772 NM_004776 NM_004798 NM_004866 NM_004873 NM_004904 NM_004910 NM_004936 NM_004938 NM_004992 NM_005018 NM_005026 NM_005098 NM_005173 NM_005228 NM_005238 NM_005252 NM_005253 NM_005262 NM_005311 NM_005317 NM_005373 NM_005397 NM_005413 NM_005430 NM_005432 NM_005449 NM_005458 NM_005463 NM_005465 NM_005481 NM_005503 NM_005516 NM_005541 NM_005599 NM_005604 NM_005626 NM_005629 NM_005647 NM_005783 NM_005785 NM_005794 NM_005805 NM_005816 NM_005824 NM_005858 NM_005882 NM_005919 NM_005966 NM_005969 NM_005994 NM_006015 NM_006048 NM_006065 NM_006094 NM_006125 NM_006162 NM_006176 NM_006218 NM_006275 NM_006357 NM_006364 NM_006413 NM_006456 NM_006499 NM_006538 NM_006540 NM_006547 NM_006548 NM_006553 NM_006598 NM_006612 NM_006622 NM_006730 NM_006732 NM_006780 NM_006815 NM_006822 NM_006854 NM_006924 NM_006988 NM_006999 NM_007008 NM_007011 NM_007064 NM_007084 NM_007174 NM_007185 NM_007249 NM_007254 NM_007277 NM_007294 NM_007295 NM_007296 NM_007297 NM_007298 NM_007299 NM_007300 NM_007301 NM_007302 NM_007303 NM_007304 NM_007305 NM_007306 NM_007345 NM_007353 NM_007370 NM_012071 NM_012081 NM_012121 NM_012135 NM_012138 NM_012156 NM_012174 NM_012193 NM_012218 NM_012286 NM_012306 NM_012315 NM_012408 NM_012409 NM_012425 NM_012464 NM_012479 NM_012482 NM_013233 NM_013243 NM_013275 NM_013286 NM_013354 NM_013379 NM_013422 NM_013989 NM_014035 NM_014112 NM_014138 NM_014188 NM_014220 NM_014222 NM_014230 NM_014263 NM_014267 NM_014354 NM_014372 NM_014412 NM_014438 NM_014454 NM_014518 NM_014562 NM_014564 NM_014615 NM_014674 NM_014700 NM_014732 NM_014743 NM_014746 NM_014765 NM_014776 NM_014789 NM_014826 NM_014850 NM_014902 NM_014918 NM_014919 NM_014943 NM_014953 NM_014988 NM_015015 NM_015022 NM_015033 NM_015035 NM_015056 NM_015066 NM_015071 NM_015076 NM_015080 NM_015082 NM_015090 NM_015113 NM_015116 NM_015137 NM_015141 NM_015166 NM_015176 NM_015178 NM_015192 NM_015202 NM_015225 NM_015226 NM_015250 NM_015254 NM_015265 NM_015282 NM_015288 NM_015310 NM_015317 NM_015338 NM_015339 NM_015347 NM_015380 NM_015383 NM_015385 NM_015409 NM_015428 NM_015441 NM_015493 NM_015530 NM_015541 NM_015558 NM_015585 NM_015641 NM_015685 NM_015691 NM_015726 NM_015836 NM_015949 NM_015979 NM_015980 NM_015995 NM_016011 NM_016018 NM_016108 NM_016124 NM_016156 NM_016196 NM_016225 NM_016248 NM_016264 NM_016390 NM_016418 NM_016433 NM_016476 NM_016485 NM_016525 NM_016534 NM_016536 NM_016548 NM_016575 NM_016590 NM_016611 NM_016641 NM_016929 NM_016932 NM_017413 NM_017415 NM_017449 NM_017450 NM_017582 NM_017583 NM_017664 NM_017671 NM_017709 NM_017740 NM_017751 NM_017772 NM_017786 NM_017860 NM_017894 NM_017921 NM_017924 NM_017927 NM_017929 NM_017951 NM_017955 NM_017968 NM_017999 NM_018019 NM_018054 NM_018069 NM_018073 NM_018088 NM_018185 NM_018198 NM_018212 NM_018224 NM_018293 NM_018295 NM_018307 NM_018316 NM_018322 NM_018332 NM_018340 NM_018348 NM_018364 NM_018376 NM_018388 NM_018426 NM_018440 NM_018450 NM_018482 NM_018492 NM_018685 NM_018706 NM_018837 NM_018944 NM_018945 NM_018975 NM_019020 NM_019027 NM_019040 NM_019094 NM_019109 NM_019591 NM_020062 NM_020119 NM_020123 NM_020125 NM_020131 NM_020163 NM_020168 NM_020198 NM_020200 NM_020307 NM_020358 NM_020374 NM_020390 NM_020405 NM_020407 NM_020418 NM_020440 NM_020482 NM_020485 NM_020532 NM_020536 NM_020638 NM_020661 NM_020761 NM_020778 NM_020801 NM_020851 NM_020858 NM_020909 NM_020914 NM_020919 NM_020935 NM_020940 NM_020977 NM_021005 NM_021036 NM_021038 NM_021096 NM_021153 NM_021161 NM_021239 NM_021255 NM_021574 NM_021627 NM_021642 NM_021652 NM_021801 NM_021813 NM_021818 NM_021872 NM_021873 NM_021874 NM_021911 NM_021938 NM_021940 NM_021962 NM_021966 NM_022074 NM_022131 NM_022363 NM_022484 NM_022493 NM_022497 NM_022733 NM_022764 NM_022777 NM_022786 NM_022818 NM_022833 NM_022905 NM_022918 NM_023076 NM_023109 NM_023914 NM_024007 NM_024015 NM_024052 NM_024080 NM_024103 NM_024104 NM_024109 NM_024310 NM_024345 NM_024569 NM_024585 NM_024593 NM_024612 NM_024627 NM_024647 NM_024659 NM_024676 NM_024733 NM_024736 NM_024785 NM_024806 NM_024828 NM_024848 NM_024922 NM_024942 NM_024948 NM_025026 NM_025040 NM_025042 NM_025059 NM_025083 NM_025091 NM_025141 NM_025145 NM_025147 NM_025193 NM_025214 NM_025243 NM_025245 NM_025250 NM_030643 NM_030651 NM_030661 NM_030667 NM_030668 NM_030669 NM_030670 NM_030671 NM_030762 NM_030781 NM_030811 NM_030939 NM_030948 NM_030959 NM_031216 NM_031448 NM_031462 NM_031464 NM_031483 NM_031484 NM_032024 NM_032181 NM_032182 NM_032207 NM_032261 NM_032289 NM_032291 NM_032296 NM_032432 NM_032449 NM_032466 NM_032468 NM_032477 NM_032479 NM_032501 NM_032536 NM_032627 NM_032648 NM_032706 NM_032801 NM_032802 NM_032805 NM_032809 NM_032823 NM_032826 NM_032838 NM_032856 NM_032866 NM_032906 NM_033008 NM_033009 NM_033010 NM_033027 NM_033053 NM_033128 NM_033136 NM_033137 NM_033226 NM_033312 NM_033332 NM_033394 NM_033513 NM_033542 NM_033655 NM_052822 NM_052832 NM_052840 NM_052858 NM_052864 NM_052876 NM_052897 NM_053044 NM_053279 NM_053281 NM_053284 NM_057169 NM_057170 NM_057178 NM_058175 NM_058189 NM_078474 NM_078487 NM_080415 NM_080417 NM_080489 NM_080542 NM_080543 NM_080551 NM_080590 NM_080605 NM_080659 NM_080676 NM_080679 NM_080680 NM_080681 NM_080758 NM_080818 NM_080822 NM_080836 NM_130466 NM_130469 NM_130797 NM_130842 NM_130843 NM_130847 NM_133330 NM_133331 NM_133332 NM_133333 NM_133334 NM_133335 NM_133336 NM_133444 NM_133473 NM_133476 NM_133477 NM_133632 NM_133633 NM_134422 NM_134423 NM_134424 NM_138317 NM_138318 NM_138322 NM_138350 NM_138400 NM_138567 NM_138568 NM_138573 NM_138612 NM_138616 NM_138617 NM_138618 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_138704 NM_138732 NM_138734 NM_139135 NM_139159 NM_139202 NM_139312 NM_139321 NM_144626 NM_144664 NM_144671 NM_144704 NM_145001 NM_145013 NM_145064 NM_145185 NM_145187 NM_145188 NM_145189 NM_145190 NM_145235 NM_145276 NM_145285 NM_145314 NM_145316 NM_145646 NM_145660 NM_145701 NM_145734 NM_147180 NM_152253 NM_152287 NM_152317 NM_152339 NM_152342 NM_152439 NM_152473 NM_152488 NM_152556 NM_152609 NM_152628 NM_152632 NM_152654 NM_152690 NM_152693 NM_152699 NM_152724 NM_152749 NM_152751 NM_152776 NM_152829 NM_152840 NM_152842 NM_152879 NM_152924 NM_153029 NM_153031 NM_153032 NM_153038 NM_153045 NM_153223 NM_153233 NM_153348 NM_153442 NM_153447 NM_153616 NM_153617 NM_153618 NM_153619 NM_153631 NM_153632 NM_153764 NM_153765 NM_153766 NM_153767 NM_153828 NM_153837 NM_170707 NM_170708 NM_170744 NM_171982 NM_172014 NM_172058 NM_172059 NM_172060 NM_172127 NM_172128 NM_172364 NM_172387 NM_172388 NM_172389 NM_173055 NM_173056 NM_173057 NM_173058 NM_173083 NM_173459 NM_173462 NM_173471 NM_173532 NM_173547 NM_173551 NM_173621 NM_173638 NM_173664 NM_173667 NM_173669 NM_173687 NM_173795 NM_173799 NM_173808 NM_173822 NM_173823 NM_173827 NM_173855 NM_174936 NM_174939 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958 NM_175611 NM_175634 NM_175635 NM_175636 NM_175709 NM_175736 NM_175895 NM_175907 NM_176081 NM_176083 NM_176084 NM_176085 NM_176086 NM_176820 NM_176894 NM_177401 NM_177926 NM_177937 NM_177954 NM_177996 NM_178120 NM_178126 NM_178138 NM_178140 NM_178516 NM_178520 NM_178526 NM_178564 NM_178568 NM_178587 NM_181337 NM_181442 NM_181489 NM_181504 NM_181523 NM_181524 NM_181578 NM_181670 NM_181701 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181846 NM_182497 NM_182501 NM_182540 NM_182580 NM_182631 NM_182643 NM_182678 NM_182700 NM_182734 NM_182757 NM_182831 NM_182832 NM_182898 NM_182899 NM_182908 NM_182909 NM_182925 NM_183006 NM_183047 NM_183048 NM_183050 NM_183337 NM_183372 NM_183373 NM_183414 NM_183415 NM_194252 NM_194290 NM_194317 NM_194358 NM_194359 NM_197956 NM_198053 NM_198066 NM_198082 NM_198155 NM_198196 NM_198232 NM_198234 NM_198235 NM_198596 NM_198686 NM_198847 NM_198887 NM_198900 NM_198935 NM_198956 NM_198989 NM_199040 NM_199050 NM_199131 NM_199461 NM_201263 NM_201277 NM_201278 NM_201281 NM_201543 NM_201544 NM_201545 NM_201625 NM_201628 NM_203293 NM_203294 NM_203295 NM_203296 NM_203297 NM_203306 NM_203307 NM_203383 NM_203384 NM_203385 NM_203386 NM_203387 NM_203388 NM_203389 NM_203394 NM_203395 NM_203453 NM_203463 NM_203510 NM_205857 NM_206855 NM_206908 NM_206912 NM_207003 NM_207172 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207331 NM_207345 NM_207358 NM_207394 NM_207405 NM_207429 NM_207434 NM_207438 NM_207442 NM_207461 NM_207473 NM_207480 NM_207509 NM_207520 NM_207521 NM_212530 NM_212552 NM_212556 NM_213723 XM_027236 XM_032571 XM_032996 XM_034872 XM_037523 XM_040592 XM_042833 XM_043493 XM_047550 XM_047554 XM_048898 XM_068632 XM_085831 XM_085833 XM_087137 XM_096317 XM_098117 XM_166320 XM_208313 XM_208333 XM_209597 XM_211251 XM_211367 XM_290547 XM_290842 XM_290923 XM_291019 XM_291028 XM_291262 XM_291625 XM_293380 XM_370654 XM_371116 XM_371176 XM_372013 XM_372019 XM_372028 XM_372030 XM_372039 XM_372097 XM_372198 XM_372267 XM_372716 XM_373030 XM_373444 XM_373744 XM_373881 XM_373973 XM_374289 XM_374315 XM_374343 XM_374768 XM_375065 XM_375185 XM_375373 XM_375456 XM_375669 XM_375697 XM_375821 XM_376018 XM_376558 XM_376652 XM_377002 XM_377476 XM_378238 XM_378321 XM_378399 XM_378419 XM_378421 XM_378511 XM_378535 XM_378573 XM_378620 XM_378625 XM_378661 XM_378667 XM_378684 XM_378700 XM_378758 XM_378823 XM_378825 XM_378914 XM_378949 XM_378957 XM_378964 XM_378971 XM_379068 XM_379075 XM_379145 XM_379183 XM_379243 XM_379298 XM_379299 XM_379452 XM_379456 XM_379512 XM_379584 XM_379628 XM_379635 XM_379648 XM_379892 XM_380135 XM_380175 XM_495909 XM_496093 XM_496202 XM_496216 XM_496266 XM_496271 XM_496328 XM_496341 XM_496343 XM_496391 XM_496394 XM_496399 XM_496539 XM_496547 XM_496613 XM_496620 XM_496690 XM_496692 XM_496889 XM_496907 XM_496945 XM_496946 XM_496947 XM_496948 XM_496949 XM_496951 XM_496952 XM_496953 XM_496954 XM_496955 XM_496956 XM_496957 XM_496960 XM_496961 XM_496984 XM_497080 XM_497098 XM_498427 XM_498448 XM_498544 XM_498555 XM_498557 XM_498563 XM_498578 XM_498587 XM_498588 XM_498651 XM_498666 XM_498671 XM_498751 XM_498778 XM_498783 XM_498817 XM_498852 XM_498869 XM_498986 XM_498997 XM_499047 XM_499051 XM_499063 XM_499170 XM_499312 XM_499343 XM_499512 XR_000268 XR_000269
Genes with multiple seed matches:
NM_000448 NM_000522 NM_001001549 NM_001001550 NM_001001555 NM_001004285 NM_001004286 NM_001005388 NM_001006113 NM_001012267 NM_001013726 NM_001017989 NM_001116 NM_002357 NM_002501 NM_003107 NM_003281 NM_003800 NM_004227 NM_004273 NM_004518 NM_005311 NM_005994 NM_006094 NM_007174 NM_007249 NM_012121 NM_013286 NM_014732 NM_014743 NM_014850 NM_014919 NM_015090 NM_015166 NM_015980 NM_016485 NM_016590 NM_018340 NM_018440 NM_018945 NM_020119 NM_020405 NM_020940 NM_021036 NM_021966 NM_022818 NM_030651 NM_031448 NM_032801 NM_133332 NM_133333 NM_139159 NM_139202 NM_171982 NM_173669 NM_175907 NM_181489 NM_182643 NM_198066 NM_203395 NM_206908 NM_206912 NM_207405 NM_213723 XM_027236 XM_032571 XM_208333 XM_372267 XM_377476 XM_378399 XM_378620 XM_378957 XM_379075 XM_379512 XM_380135 XM_380175 XM_498852
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)