VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"caauaugcuaaaacgcggu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
550
.
Total Genes with multiple seed matches:
47
.
Genes with at least one seed match:
NM_000053 NM_000136 NM_000163 NM_000211 NM_000268 NM_000303 NM_000335 NM_000411 NM_000455 NM_000618 NM_000683 NM_000719 NM_000820 NM_001001188 NM_001001502 NM_001001697 NM_001001795 NM_001002814 NM_001003399 NM_001004285 NM_001004286 NM_001005387 NM_001005610 NM_001005612 NM_001005614 NM_001005918 NM_001007546 NM_001008272 NM_001008273 NM_001008407 NM_001008493 NM_001009880 NM_001009939 NM_001010897 NM_001010910 NM_001010925 NM_001010938 NM_001012710 NM_001013633 NM_001013673 NM_001013724 NM_001013725 NM_001013726 NM_001014374 NM_001014436 NM_001014440 NM_001015886 NM_001017965 NM_001023565 NM_001024401 NM_001024677 NM_001025108 NM_001094 NM_001116 NM_001119 NM_001163 NM_001174 NM_001183 NM_001234 NM_001299 NM_001395 NM_001414 NM_001420 NM_001447 NM_001452 NM_001492 NM_001523 NM_001672 NM_001715 NM_001908 NM_001961 NM_002010 NM_002105 NM_002199 NM_002249 NM_002284 NM_002285 NM_002297 NM_002319 NM_002386 NM_002479 NM_002556 NM_002579 NM_002653 NM_002688 NM_002779 NM_002819 NM_002938 NM_002978 NM_003003 NM_003004 NM_003036 NM_003085 NM_003107 NM_003108 NM_003225 NM_003247 NM_003255 NM_003277 NM_003288 NM_003378 NM_003382 NM_003388 NM_003483 NM_003496 NM_003542 NM_003602 NM_003636 NM_003655 NM_003806 NM_003834 NM_003836 NM_003924 NM_003926 NM_003950 NM_003999 NM_004080 NM_004090 NM_004402 NM_004430 NM_004442 NM_004473 NM_004488 NM_004514 NM_004720 NM_004745 NM_004824 NM_004881 NM_004991 NM_005098 NM_005146 NM_005185 NM_005231 NM_005357 NM_005380 NM_005503 NM_005583 NM_005781 NM_005986 NM_006026 NM_006029 NM_006035 NM_006037 NM_006137 NM_006237 NM_006288 NM_006319 NM_006623 NM_006651 NM_006814 NM_006908 NM_007229 NM_007277 NM_007371 NM_012088 NM_012315 NM_012384 NM_012405 NM_012479 NM_013259 NM_013325 NM_014063 NM_014189 NM_014190 NM_014213 NM_014374 NM_014578 NM_014580 NM_014603 NM_014636 NM_014665 NM_014732 NM_014746 NM_014770 NM_014772 NM_014801 NM_014835 NM_014844 NM_014851 NM_014914 NM_014919 NM_014953 NM_015015 NM_015056 NM_015063 NM_015094 NM_015160 NM_015166 NM_015224 NM_015254 NM_015260 NM_015264 NM_015286 NM_015289 NM_015318 NM_015330 NM_015380 NM_015447 NM_015503 NM_015530 NM_015559 NM_015568 NM_015654 NM_015720 NM_015891 NM_015894 NM_016068 NM_016176 NM_016358 NM_016376 NM_016418 NM_016547 NM_016639 NM_017449 NM_017450 NM_017528 NM_017566 NM_017617 NM_017668 NM_017703 NM_017714 NM_017789 NM_017797 NM_017831 NM_017882 NM_017911 NM_017931 NM_017957 NM_018059 NM_018110 NM_018212 NM_018216 NM_018390 NM_018652 NM_018683 NM_018688 NM_018890 NM_018945 NM_018951 NM_019034 NM_019060 NM_019094 NM_020132 NM_020134 NM_020328 NM_020530 NM_020851 NM_020956 NM_021064 NM_021189 NM_021267 NM_021646 NM_021996 NM_022114 NM_022117 NM_022119 NM_022164 NM_022363 NM_022377 NM_022834 NM_023076 NM_023088 NM_024015 NM_024072 NM_024076 NM_024329 NM_024600 NM_024830 NM_024866 NM_024893 NM_025002 NM_030661 NM_030782 NM_030928 NM_030968 NM_031208 NM_031310 NM_031945 NM_031990 NM_031991 NM_032134 NM_032153 NM_032179 NM_032242 NM_032251 NM_032262 NM_032281 NM_032307 NM_032377 NM_032382 NM_032421 NM_032508 NM_032520 NM_032529 NM_032538 NM_032646 NM_032732 NM_032737 NM_032740 NM_032777 NM_032808 NM_032818 NM_032932 NM_033107 NM_033136 NM_033137 NM_033226 NM_033260 NM_033282 NM_033309 NM_033337 NM_033404 NM_033626 NM_052851 NM_052869 NM_052906 NM_052919 NM_053056 NM_054111 NM_057088 NM_058181 NM_058238 NM_058246 NM_080605 NM_080792 NM_130469 NM_133330 NM_133331 NM_133332 NM_133333 NM_133334 NM_133335 NM_133336 NM_133369 NM_138320 NM_138321 NM_138344 NM_138372 NM_138415 NM_138445 NM_138565 NM_138778 NM_139016 NM_139202 NM_139248 NM_139278 NM_139283 NM_144498 NM_144640 NM_144669 NM_144999 NM_145045 NM_145115 NM_145187 NM_145188 NM_145189 NM_145190 NM_145239 NM_145260 NM_145285 NM_145293 NM_145728 NM_145752 NM_145805 NM_147184 NM_147780 NM_147781 NM_147782 NM_147783 NM_148968 NM_148969 NM_148971 NM_148972 NM_148973 NM_148974 NM_152335 NM_152371 NM_152480 NM_152557 NM_152769 NM_152855 NM_152889 NM_153038 NM_153350 NM_153449 NM_153462 NM_153463 NM_153482 NM_153487 NM_153620 NM_153631 NM_153632 NM_153715 NM_156036 NM_170705 NM_170751 NM_170752 NM_170782 NM_171982 NM_172130 NM_173584 NM_173617 NM_173627 NM_173680 NM_173681 NM_173795 NM_173823 NM_174927 NM_175066 NM_175711 NM_175847 NM_175895 NM_175898 NM_175901 NM_176801 NM_177978 NM_177979 NM_178006 NM_178007 NM_178326 NM_178448 NM_178516 NM_178543 NM_178569 NM_178571 NM_178578 NM_178579 NM_181336 NM_181430 NM_181431 NM_181484 NM_181788 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181862 NM_181863 NM_182533 NM_182584 NM_182612 NM_182740 NM_182744 NM_182752 NM_182828 NM_183337 NM_183377 NM_194310 NM_194352 NM_198056 NM_198207 NM_198466 NM_198553 NM_198559 NM_198593 NM_198594 NM_198829 NM_198851 NM_199040 NM_199121 NM_199227 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363 NM_199367 NM_199454 NM_203400 NM_207306 NM_207349 NM_207419 NM_207483 NM_207510 NM_207644 NM_213568 XM_035601 XM_037523 XM_050278 XM_166527 XM_168578 XM_291105 XM_370758 XM_372273 XM_373823 XM_373922 XM_373973 XM_374141 XM_374343 XM_374502 XM_376062 XM_376558 XM_376902 XM_377076 XM_377476 XM_378355 XM_378394 XM_378421 XM_378567 XM_378582 XM_378623 XM_378643 XM_378825 XM_378860 XM_378883 XM_378914 XM_378957 XM_379145 XM_379243 XM_379258 XM_379386 XM_379391 XM_379417 XM_379459 XM_379495 XM_379809 XM_380114 XM_495918 XM_496223 XM_496876 XM_498448 XM_498490 XM_498563 XM_498632 XM_498649 XM_498651 XM_498693 XM_498696 XM_498704 XM_498899 XM_498917 XM_499003 XM_499009 XM_499056 XM_499106 XM_499170 XM_499251 XM_499276 XM_499293 XM_499503 XR_000182 XR_000194 XR_000256 XR_000268 XR_000269
Genes with multiple seed matches:
NM_000455 NM_001001188 NM_001009880 NM_001013726 NM_001023565 NM_002556 NM_002579 NM_002653 NM_002978 NM_004514 NM_006651 NM_007229 NM_014665 NM_014914 NM_015015 NM_015264 NM_019034 NM_021267 NM_023088 NM_024072 NM_024830 NM_032508 NM_032538 NM_032737 NM_032777 NM_053056 NM_080605 NM_145239 NM_145260 NM_148968 NM_148969 NM_148971 NM_148972 NM_148973 NM_148974 NM_152889 NM_173617 NM_173627 NM_178516 NM_181430 NM_181431 NM_194310 XM_037523 XM_374141 XM_376558 XM_498563 XR_000268
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)