VIRsiRNAdb

Predicted off-targets seeds for siRNA "aaaacacaacggaaugcga" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :946.
Total Genes with multiple seed matches: 28.
Genes with at least one seed match: NM_000029 NM_000092 NM_000219 NM_000248 NM_000320 NM_000333 NM_000335 NM_000351 NM_000376 NM_000391 NM_000407 NM_000417 NM_000457 NM_000495 NM_000527 NM_000545 NM_000599 NM_000661 NM_000664 NM_000693 NM_000706 NM_000738 NM_000749 NM_000892 NM_000908 NM_000909 NM_000944 NM_000983 NM_001001396 NM_001001411 NM_001001664 NM_001001704 NM_001001707 NM_001001713 NM_001001852 NM_001001890 NM_001001928 NM_001001929 NM_001001930 NM_001002914 NM_001003399 NM_001003665 NM_001003674 NM_001003675 NM_001003792 NM_001003793 NM_001003810 NM_001004299 NM_001004302 NM_001005303 NM_001005502 NM_001005920 NM_001006634 NM_001006932 NM_001007237 NM_001007279 NM_001007466 NM_001007535 NM_001008220 NM_001008409 NM_001008493 NM_001008569 NM_001009567 NM_001009880 NM_001010897 NM_001010909 NM_001010935 NM_001011514 NM_001011708 NM_001012420 NM_001012423 NM_001013640 NM_001013652 NM_001013656 NM_001013661 NM_001013674 NM_001013682 NM_001013699 NM_001013710 NM_001013713 NM_001013718 NM_001013723 NM_001014445 NM_001015881 NM_001017371 NM_001017395 NM_001017424 NM_001017425 NM_001017535 NM_001017923 NM_001017926 NM_001017975 NM_001018089 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018097 NM_001018098 NM_001023563 NM_001024463 NM_001024631 NM_001024666 NM_001024921 NM_001024947 NM_001025108 NM_001025266 NM_001092 NM_001114 NM_001124 NM_001148 NM_001219 NM_001282 NM_001356 NM_001365 NM_001384 NM_001420 NM_001424 NM_001451 NM_001482 NM_001513 NM_001518 NM_001542 NM_001552 NM_001585 NM_001668 NM_001754 NM_001755 NM_001874 NM_001904 NM_001964 NM_002017 NM_002074 NM_002107 NM_002138 NM_002142 NM_002167 NM_002182 NM_002196 NM_002241 NM_002253 NM_002285 NM_002315 NM_002318 NM_002357 NM_002438 NM_002451 NM_002460 NM_002507 NM_002515 NM_002563 NM_002600 NM_002639 NM_002719 NM_002725 NM_002765 NM_002775 NM_002868 NM_002884 NM_002928 NM_002968 NM_003005 NM_003030 NM_003091 NM_003096 NM_003097 NM_003108 NM_003111 NM_003112 NM_003144 NM_003155 NM_003161 NM_003257 NM_003262 NM_003369 NM_003375 NM_003392 NM_003399 NM_003428 NM_003463 NM_003471 NM_003476 NM_003486 NM_003487 NM_003498 NM_003508 NM_003580 NM_003590 NM_003603 NM_003605 NM_003619 NM_003646 NM_003670 NM_003705 NM_003713 NM_003805 NM_003828 NM_003861 NM_003870 NM_003899 NM_003975 NM_004035 NM_004089 NM_004098 NM_004109 NM_004171 NM_004200 NM_004315 NM_004316 NM_004331 NM_004338 NM_004393 NM_004407 NM_004438 NM_004447 NM_004449 NM_004459 NM_004488 NM_004494 NM_004516 NM_004518 NM_004567 NM_004588 NM_004628 NM_004632 NM_004690 NM_004703 NM_004759 NM_004770 NM_004791 NM_004795 NM_004804 NM_004827 NM_004830 NM_004834 NM_004869 NM_004982 NM_004993 NM_005036 NM_005041 NM_005049 NM_005069 NM_005088 NM_005099 NM_005105 NM_005112 NM_005188 NM_005235 NM_005266 NM_005324 NM_005332 NM_005399 NM_005436 NM_005466 NM_005494 NM_005506 NM_005590 NM_005591 NM_005668 NM_005670 NM_005678 NM_005730 NM_005742 NM_005745 NM_005831 NM_005923 NM_005965 NM_005986 NM_006206 NM_006218 NM_006244 NM_006272 NM_006390 NM_006486 NM_006489 NM_006515 NM_006520 NM_006524 NM_006544 NM_006546 NM_006557 NM_006566 NM_006599 NM_006611 NM_006650 NM_006722 NM_006769 NM_006805 NM_006873 NM_006876 NM_006884 NM_007007 NM_007027 NM_007038 NM_007073 NM_007083 NM_007148 NM_007191 NM_007222 NM_007231 NM_007247 NM_007249 NM_007292 NM_007341 NM_007344 NM_012074 NM_012075 NM_012130 NM_012137 NM_012174 NM_012213 NM_012264 NM_012287 NM_012297 NM_012306 NM_012307 NM_012346 NM_012384 NM_012434 NM_012463 NM_013261 NM_013316 NM_013328 NM_013341 NM_013943 NM_014062 NM_014066 NM_014112 NM_014157 NM_014191 NM_014217 NM_014230 NM_014286 NM_014323 NM_014332 NM_014350 NM_014399 NM_014445 NM_014448 NM_014498 NM_014507 NM_014521 NM_014616 NM_014653 NM_014659 NM_014698 NM_014721 NM_014732 NM_014744 NM_014747 NM_014751 NM_014765 NM_014772 NM_014781 NM_014789 NM_014792 NM_014801 NM_014841 NM_014848 NM_014850 NM_014853 NM_014868 NM_014872 NM_014873 NM_014974 NM_014996 NM_015003 NM_015008 NM_015009 NM_015025 NM_015044 NM_015056 NM_015078 NM_015086 NM_015134 NM_015157 NM_015198 NM_015200 NM_015205 NM_015254 NM_015263 NM_015264 NM_015271 NM_015353 NM_015375 NM_015391 NM_015397 NM_015433 NM_015493 NM_015576 NM_015621 NM_015691 NM_015714 NM_015855 NM_015892 NM_015994 NM_016040 NM_016169 NM_016224 NM_016297 NM_016359 NM_016374 NM_016388 NM_016427 NM_016441 NM_016447 NM_016483 NM_016530 NM_016553 NM_016575 NM_016617 NM_016652 NM_016831 NM_016930 NM_017409 NM_017491 NM_017590 NM_017594 NM_017631 NM_017652 NM_017684 NM_017705 NM_017712 NM_017748 NM_017819 NM_017837 NM_017935 NM_017969 NM_017988 NM_018014 NM_018054 NM_018096 NM_018105 NM_018151 NM_018212 NM_018247 NM_018260 NM_018325 NM_018328 NM_018340 NM_018404 NM_018452 NM_018454 NM_018590 NM_018708 NM_019072 NM_019091 NM_019845 NM_019887 NM_020119 NM_020128 NM_020145 NM_020159 NM_020163 NM_020165 NM_020215 NM_020239 NM_020245 NM_020310 NM_020357 NM_020422 NM_020432 NM_020552 NM_020553 NM_020647 NM_020655 NM_020673 NM_020676 NM_020724 NM_020740 NM_020742 NM_020761 NM_020791 NM_020792 NM_020821 NM_020824 NM_020831 NM_020851 NM_020909 NM_020959 NM_020977 NM_021033 NM_021049 NM_021069 NM_021083 NM_021135 NM_021137 NM_021188 NM_021195 NM_021269 NM_021570 NM_021620 NM_021638 NM_021830 NM_021962 NM_021964 NM_021965 NM_022041 NM_022142 NM_022145 NM_022148 NM_022451 NM_022461 NM_022463 NM_022471 NM_022658 NM_022751 NM_022755 NM_022781 NM_022805 NM_022806 NM_022807 NM_022808 NM_022845 NM_022898 NM_023930 NM_024301 NM_024408 NM_024508 NM_024573 NM_024611 NM_024623 NM_024721 NM_024830 NM_024859 NM_024869 NM_024878 NM_024911 NM_024955 NM_025054 NM_030576 NM_030650 NM_030660 NM_030759 NM_030799 NM_030821 NM_030952 NM_030964 NM_031211 NM_031215 NM_031369 NM_031370 NM_031371 NM_031407 NM_031452 NM_031453 NM_031892 NM_032039 NM_032050 NM_032052 NM_032175 NM_032189 NM_032228 NM_032262 NM_032268 NM_032279 NM_032281 NM_032290 NM_032446 NM_032451 NM_032529 NM_032594 NM_032813 NM_032837 NM_032878 NM_032999 NM_033000 NM_033001 NM_033064 NM_033102 NM_033206 NM_033224 NM_033238 NM_033285 NM_033288 NM_033329 NM_033380 NM_033381 NM_033402 NM_033420 NM_033657 NM_052831 NM_052848 NM_052859 NM_052879 NM_053003 NM_053023 NM_053025 NM_053026 NM_053027 NM_053028 NM_053029 NM_053030 NM_053031 NM_053032 NM_053279 NM_080550 NM_080678 NM_080862 NM_130760 NM_130761 NM_130762 NM_130847 NM_133265 NM_133444 NM_133477 NM_134324 NM_134425 NM_138300 NM_138323 NM_138324 NM_138425 NM_138447 NM_138492 NM_138553 NM_138559 NM_138576 NM_138640 NM_138697 NM_138699 NM_138713 NM_138714 NM_138731 NM_138775 NM_138929 NM_138930 NM_138969 NM_139016 NM_139058 NM_139215 NM_139248 NM_139265 NM_139284 NM_144492 NM_144583 NM_144598 NM_144610 NM_144649 NM_144679 NM_144684 NM_144693 NM_144717 NM_144966 NM_144967 NM_145068 NM_145174 NM_145178 NM_145266 NM_145686 NM_145687 NM_145693 NM_145865 NM_145870 NM_145871 NM_147147 NM_147160 NM_148903 NM_148957 NM_152282 NM_152301 NM_152308 NM_152330 NM_152417 NM_152460 NM_152490 NM_152519 NM_152542 NM_152608 NM_152641 NM_152731 NM_152739 NM_152889 NM_153008 NM_153348 NM_153442 NM_153451 NM_153464 NM_153478 NM_153479 NM_153683 NM_153691 NM_153710 NM_153718 NM_153719 NM_153812 NM_153837 NM_171998 NM_171999 NM_172020 NM_172069 NM_172159 NM_172160 NM_172346 NM_173214 NM_173341 NM_173465 NM_173467 NM_173475 NM_173497 NM_173557 NM_173578 NM_173602 NM_173621 NM_173653 NM_173681 NM_173682 NM_173827 NM_174911 NM_174977 NM_175610 NM_175614 NM_175748 NM_175875 NM_175921 NM_176789 NM_176823 NM_177414 NM_177539 NM_177540 NM_177541 NM_177551 NM_177924 NM_177986 NM_178129 NM_178426 NM_178427 NM_178476 NM_178514 NM_178544 NM_178565 NM_178566 NM_178586 NM_178836 NM_178849 NM_178861 NM_181076 NM_181077 NM_181332 NM_181481 NM_181482 NM_181483 NM_181703 NM_182525 NM_182546 NM_182578 NM_182633 NM_182641 NM_182756 NM_182798 NM_182799 NM_182801 NM_182918 NM_182960 NM_183385 NM_194278 NM_194328 NM_194329 NM_194330 NM_194331 NM_194332 NM_197958 NM_198041 NM_198056 NM_198057 NM_198074 NM_198075 NM_198076 NM_198147 NM_198152 NM_198158 NM_198159 NM_198177 NM_198178 NM_198270 NM_198320 NM_198442 NM_198474 NM_198485 NM_198513 NM_198571 NM_198595 NM_198835 NM_198867 NM_198893 NM_199003 NM_199045 NM_199050 NM_199054 NM_199168 NM_199182 NM_199188 NM_199190 NM_199336 NM_199462 NM_201274 NM_201348 NM_201399 NM_201520 NM_201532 NM_201533 NM_203293 NM_203294 NM_203295 NM_203296 NM_203297 NM_203405 NM_203422 NM_203504 NM_203505 NM_205846 NM_206853 NM_206854 NM_206855 NM_206914 NM_207335 NM_207349 NM_207367 NM_207401 NM_207406 NM_207432 NM_207435 NM_207451 NM_207470 NM_207483 NM_207505 NM_213596 XM_031553 XM_031689 XM_032945 XM_035497 XM_037523 XM_038436 XM_043493 XM_044434 XM_046264 XM_048592 XM_050278 XM_056455 XM_084529 XM_114415 XM_117117 XM_208234 XM_208333 XM_208990 XM_209363 XM_209700 XM_209824 XM_290401 XM_291729 XM_292160 XM_294993 XM_370536 XM_370665 XM_370729 XM_370837 XM_370838 XM_370839 XM_370843 XM_370879 XM_370917 XM_371933 XM_373030 XM_373631 XM_374270 XM_374399 XM_374491 XM_374766 XM_375152 XM_375491 XM_375669 XM_376062 XM_376241 XM_376284 XM_376560 XM_376616 XM_376680 XM_376905 XM_378394 XM_378411 XM_378567 XM_378620 XM_378625 XM_378655 XM_378684 XM_378843 XM_378874 XM_378914 XM_378973 XM_379023 XM_379100 XM_379402 XM_379417 XM_379458 XM_379477 XM_379515 XM_379520 XM_379628 XM_379635 XM_379637 XM_379656 XM_379694 XM_379736 XM_379843 XM_379844 XM_379877 XM_379934 XM_380092 XM_380139 XM_380146 XM_495807 XM_495848 XM_495873 XM_495908 XM_496050 XM_496086 XM_496328 XM_496401 XM_496549 XM_496551 XM_496577 XM_496773 XM_496826 XM_496895 XM_497080 XM_498424 XM_498446 XM_498464 XM_498531 XM_498545 XM_498649 XM_498744 XM_498884 XM_498958 XM_499003 XM_499065 XM_499085 XM_499102 XM_499182 XM_499323 XM_499515 XM_499554 XM_499576 XM_499594 XR_000184 XR_000265 XR_000294	Genes with multiple seed matches: NM_001006634 NM_001007466 NM_001011708 NM_001015881 NM_001018097 NM_002868 NM_003605 NM_004089 NM_005678 NM_013341 NM_014286 NM_014323 NM_014789 NM_015056 NM_018054 NM_020245 NM_020647 NM_022041 NM_024878 NM_032050 NM_032052 NM_033064 NM_053029 NM_173621 NM_178514 NM_198057 NM_198513 XM_291729

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA