VIRsiRNAdb

Predicted off-targets seeds for siRNA "ucaauaugcuaaaacgcgg" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :296.
Total Genes with multiple seed matches: 10.
Genes with at least one seed match: NM_000088 NM_000152 NM_000303 NM_000618 NM_000983 NM_001001502 NM_001001707 NM_001001791 NM_001001795 NM_001002295 NM_001005407 NM_001006634 NM_001007257 NM_001008408 NM_001009584 NM_001012267 NM_001013685 NM_001013707 NM_001013712 NM_001013725 NM_001013726 NM_001014440 NM_001015886 NM_001023565 NM_001024460 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001025108 NM_001116 NM_001183 NM_001229 NM_001287 NM_001457 NM_001659 NM_001896 NM_001995 NM_002051 NM_002073 NM_002149 NM_002165 NM_002284 NM_002285 NM_002297 NM_002319 NM_002385 NM_002479 NM_002501 NM_002595 NM_002656 NM_003036 NM_003085 NM_003107 NM_003247 NM_003255 NM_003281 NM_003483 NM_003603 NM_003657 NM_003806 NM_003834 NM_003913 NM_004080 NM_004090 NM_004245 NM_004273 NM_004349 NM_004442 NM_004689 NM_004788 NM_004845 NM_004937 NM_005065 NM_005098 NM_005124 NM_005194 NM_005432 NM_005503 NM_005647 NM_005919 NM_005953 NM_006029 NM_006160 NM_006315 NM_006454 NM_006623 NM_006718 NM_007087 NM_007277 NM_007331 NM_012301 NM_012315 NM_012409 NM_012429 NM_013373 NM_013401 NM_013449 NM_014700 NM_014801 NM_014916 NM_014953 NM_015035 NM_015056 NM_015099 NM_015202 NM_015229 NM_015380 NM_015557 NM_015558 NM_015585 NM_015866 NM_016547 NM_017449 NM_017896 NM_017968 NM_017991 NM_018054 NM_018088 NM_018342 NM_018399 NM_018683 NM_018975 NM_019007 NM_019009 NM_019020 NM_019094 NM_020119 NM_020226 NM_020328 NM_020445 NM_020693 NM_020742 NM_020761 NM_020851 NM_021069 NM_021098 NM_021248 NM_021646 NM_021996 NM_022166 NM_022167 NM_022479 NM_022776 NM_024007 NM_024072 NM_024600 NM_024627 NM_024676 NM_024784 NM_024893 NM_025026 NM_030636 NM_030661 NM_030665 NM_030959 NM_031265 NM_032181 NM_032242 NM_032251 NM_032261 NM_032382 NM_032432 NM_032737 NM_032809 NM_032818 NM_032996 NM_033107 NM_033136 NM_033137 NM_033161 NM_033226 NM_033260 NM_033274 NM_053281 NM_057088 NM_078625 NM_130469 NM_134421 NM_144669 NM_145045 NM_145064 NM_145115 NM_145187 NM_145188 NM_145189 NM_145190 NM_145239 NM_145646 NM_152611 NM_152632 NM_153038 NM_153247 NM_153360 NM_153620 NM_153631 NM_153632 NM_173477 NM_173527 NM_173627 NM_173795 NM_174927 NM_175062 NM_175634 NM_175635 NM_175636 NM_175898 NM_177401 NM_178516 NM_178571 NM_181332 NM_181337 NM_181353 NM_181788 NM_182584 NM_183337 NM_194352 NM_198935 NM_198989 NM_199040 NM_199227 NM_201631 NM_206835 NM_207306 NM_207394 NM_207419 NM_207442 NM_207461 NM_207473 XM_032996 XM_035601 XM_037523 XM_043493 XM_051017 XM_211367 XM_371474 XM_372013 XM_372019 XM_372028 XM_372030 XM_372716 XM_373973 XM_374141 XM_374766 XM_375629 XM_376062 XM_376558 XM_377476 XM_378421 XM_378825 XM_378914 XM_378957 XM_379214 XM_379243 XM_379258 XM_379381 XM_379391 XM_379459 XM_379541 XM_379656 XM_496202 XM_496271 XM_496877 XM_496945 XM_496946 XM_496947 XM_496948 XM_496949 XM_496951 XM_496952 XM_496953 XM_496954 XM_496955 XM_496956 XM_496957 XM_496960 XM_496961 XM_496976 XM_497002 XM_498448 XM_498490 XM_498540 XM_498563 XM_498588 XM_498651 XM_498693 XM_498696 XM_498823 XM_499009 XM_499106 XR_000190 XR_000194 XR_000268 XR_000269	Genes with multiple seed matches: NM_004349 NM_005098 NM_020851 NM_173627 NM_175634 NM_175635 NM_175636 NM_178516 XM_037523 XM_498563

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA