VIRsiRNAdb

Predicted off-targets seeds for siRNA "gggaaacacuacccgguua" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :946.
Total Genes with multiple seed matches: 55.
Genes with at least one seed match: NM_000052 NM_000114 NM_000161 NM_000219 NM_000254 NM_000260 NM_000267 NM_000278 NM_000303 NM_000304 NM_000346 NM_000367 NM_000442 NM_000451 NM_000455 NM_000512 NM_000527 NM_000567 NM_000599 NM_000611 NM_000619 NM_000633 NM_000661 NM_000664 NM_000675 NM_000685 NM_000724 NM_000734 NM_000787 NM_000809 NM_000814 NM_000861 NM_000876 NM_000877 NM_000878 NM_000891 NM_000961 NM_001001418 NM_001001675 NM_001001681 NM_001001685 NM_001001699 NM_001001789 NM_001001894 NM_001001928 NM_001001929 NM_001001930 NM_001003406 NM_001003665 NM_001003692 NM_001003845 NM_001004317 NM_001005266 NM_001005267 NM_001005268 NM_001005269 NM_001005303 NM_001006636 NM_001007553 NM_001008235 NM_001008236 NM_001008405 NM_001008490 NM_001008539 NM_001008917 NM_001009812 NM_001009909 NM_001010000 NM_001012418 NM_001012426 NM_001012427 NM_001012514 NM_001012516 NM_001012733 NM_001012734 NM_001012960 NM_001012977 NM_001012984 NM_001012988 NM_001013635 NM_001013649 NM_001013673 NM_001013682 NM_001013683 NM_001013701 NM_001013721 NM_001017972 NM_001017992 NM_001018037 NM_001024024 NM_001024070 NM_001024071 NM_001024598 NM_001024654 NM_001024843 NM_001024921 NM_001025105 NM_001103 NM_001109 NM_001127 NM_001188 NM_001197 NM_001219 NM_001253 NM_001257 NM_001277 NM_001319 NM_001365 NM_001387 NM_001419 NM_001420 NM_001440 NM_001447 NM_001455 NM_001537 NM_001543 NM_001642 NM_001696 NM_001711 NM_001789 NM_001806 NM_001831 NM_001842 NM_001858 NM_001892 NM_001945 NM_001978 NM_001986 NM_002033 NM_002048 NM_002068 NM_002080 NM_002081 NM_002125 NM_002141 NM_002147 NM_002158 NM_002163 NM_002382 NM_002384 NM_002386 NM_002427 NM_002442 NM_002478 NM_002518 NM_002522 NM_002547 NM_002566 NM_002590 NM_002613 NM_002628 NM_002639 NM_002707 NM_002726 NM_002819 NM_002827 NM_002938 NM_002994 NM_003029 NM_003030 NM_003045 NM_003046 NM_003074 NM_003108 NM_003152 NM_003174 NM_003214 NM_003281 NM_003312 NM_003316 NM_003353 NM_003373 NM_003390 NM_003404 NM_003412 NM_003423 NM_003486 NM_003575 NM_003583 NM_003605 NM_003682 NM_003683 NM_003748 NM_003751 NM_003781 NM_003792 NM_003804 NM_003808 NM_003827 NM_003882 NM_003950 NM_003979 NM_003983 NM_003987 NM_003988 NM_003989 NM_003990 NM_004077 NM_004090 NM_004132 NM_004172 NM_004234 NM_004356 NM_004387 NM_004414 NM_004417 NM_004427 NM_004430 NM_004455 NM_004458 NM_004459 NM_004474 NM_004506 NM_004518 NM_004531 NM_004559 NM_004580 NM_004614 NM_004642 NM_004727 NM_004729 NM_004730 NM_004736 NM_004835 NM_004863 NM_004898 NM_004928 NM_004943 NM_004973 NM_004992 NM_005036 NM_005049 NM_005116 NM_005184 NM_005194 NM_005276 NM_005297 NM_005329 NM_005345 NM_005354 NM_005373 NM_005380 NM_005430 NM_005604 NM_005667 NM_005715 NM_005816 NM_005875 NM_005885 NM_005902 NM_005935 NM_005947 NM_005968 NM_006033 NM_006048 NM_006054 NM_006096 NM_006119 NM_006133 NM_006135 NM_006184 NM_006276 NM_006290 NM_006310 NM_006454 NM_006478 NM_006482 NM_006493 NM_006496 NM_006536 NM_006540 NM_006569 NM_006609 NM_006663 NM_006711 NM_006734 NM_006753 NM_006814 NM_006815 NM_006822 NM_006825 NM_006884 NM_006941 NM_006989 NM_007005 NM_007039 NM_007045 NM_007050 NM_007071 NM_007084 NM_007129 NM_007158 NM_007170 NM_007249 NM_007273 NM_007294 NM_007295 NM_007296 NM_007297 NM_007298 NM_007299 NM_007300 NM_007301 NM_007302 NM_007303 NM_007304 NM_007305 NM_007306 NM_007318 NM_007327 NM_007331 NM_007354 NM_007363 NM_007368 NM_009585 NM_012083 NM_012095 NM_012121 NM_012219 NM_012287 NM_012301 NM_012306 NM_012321 NM_012405 NM_013231 NM_013286 NM_013325 NM_013332 NM_013334 NM_013381 NM_013411 NM_013438 NM_014000 NM_014066 NM_014079 NM_014153 NM_014170 NM_014232 NM_014235 NM_014279 NM_014349 NM_014417 NM_014432 NM_014472 NM_014506 NM_014507 NM_014551 NM_014593 NM_014615 NM_014630 NM_014665 NM_014667 NM_014735 NM_014747 NM_014762 NM_014798 NM_014801 NM_014804 NM_014807 NM_014809 NM_014815 NM_014824 NM_014835 NM_014844 NM_014850 NM_014854 NM_014867 NM_014891 NM_014913 NM_014919 NM_014957 NM_015004 NM_015015 NM_015035 NM_015051 NM_015053 NM_015055 NM_015056 NM_015063 NM_015074 NM_015085 NM_015088 NM_015092 NM_015101 NM_015172 NM_015180 NM_015215 NM_015224 NM_015227 NM_015253 NM_015271 NM_015314 NM_015316 NM_015321 NM_015446 NM_015458 NM_015475 NM_015568 NM_015608 NM_015638 NM_015844 NM_015846 NM_015847 NM_015848 NM_015936 NM_016037 NM_016049 NM_016071 NM_016221 NM_016233 NM_016248 NM_016257 NM_016263 NM_016297 NM_016323 NM_016531 NM_016606 NM_016630 NM_016735 NM_016831 NM_016936 NM_016937 NM_017450 NM_017544 NM_017555 NM_017570 NM_017670 NM_017709 NM_017712 NM_017732 NM_017781 NM_017853 NM_017943 NM_017966 NM_017990 NM_018027 NM_018031 NM_018043 NM_018133 NM_018134 NM_018161 NM_018195 NM_018242 NM_018265 NM_018273 NM_018390 NM_018438 NM_018509 NM_018566 NM_018660 NM_018669 NM_018702 NM_018711 NM_018712 NM_018715 NM_018842 NM_018844 NM_018953 NM_018964 NM_018981 NM_019009 NM_019046 NM_019103 NM_019594 NM_019607 NM_019613 NM_019644 NM_019841 NM_019845 NM_019850 NM_020133 NM_020148 NM_020182 NM_020211 NM_020310 NM_020367 NM_020383 NM_020429 NM_020440 NM_020710 NM_020734 NM_020774 NM_020807 NM_020809 NM_020820 NM_020947 NM_020951 NM_020956 NM_020961 NM_020988 NM_021070 NM_021096 NM_021103 NM_021155 NM_021161 NM_021167 NM_021174 NM_021198 NM_021216 NM_021267 NM_021569 NM_021738 NM_021784 NM_021824 NM_021912 NM_021971 NM_021973 NM_021977 NM_022049 NM_022062 NM_022066 NM_022078 NM_022097 NM_022112 NM_022124 NM_022153 NM_022377 NM_022452 NM_022567 NM_022744 NM_022753 NM_022764 NM_022773 NM_022842 NM_022898 NM_022977 NM_023080 NM_024098 NM_024103 NM_024119 NM_024297 NM_024322 NM_024336 NM_024492 NM_024513 NM_024545 NM_024574 NM_024591 NM_024600 NM_024623 NM_024646 NM_024659 NM_024754 NM_024757 NM_024935 NM_024938 NM_024993 NM_024996 NM_025021 NM_025058 NM_025135 NM_025136 NM_025149 NM_025155 NM_025188 NM_025196 NM_025224 NM_025232 NM_030574 NM_030594 NM_030643 NM_030644 NM_030645 NM_030661 NM_030895 NM_030926 NM_030928 NM_030981 NM_031203 NM_031268 NM_031287 NM_031412 NM_031450 NM_031459 NM_031850 NM_031990 NM_031991 NM_032037 NM_032049 NM_032108 NM_032208 NM_032236 NM_032242 NM_032281 NM_032285 NM_032311 NM_032358 NM_032472 NM_032484 NM_032508 NM_032552 NM_032569 NM_032638 NM_032792 NM_032811 NM_032818 NM_032880 NM_032949 NM_033025 NM_033118 NM_033133 NM_033163 NM_033164 NM_033165 NM_033305 NM_033309 NM_033387 NM_033429 NM_033510 NM_052847 NM_052861 NM_052943 NM_052995 NM_053024 NM_053035 NM_053064 NM_058164 NM_058169 NM_079834 NM_080552 NM_080594 NM_080621 NM_080627 NM_080647 NM_080665 NM_080836 NM_130470 NM_130471 NM_130472 NM_130473 NM_130474 NM_130475 NM_130476 NM_130783 NM_130906 NM_131916 NM_133170 NM_133329 NM_133330 NM_133331 NM_133332 NM_133333 NM_133334 NM_133335 NM_133463 NM_133468 NM_134268 NM_134324 NM_138278 NM_138317 NM_138318 NM_138368 NM_138401 NM_138457 NM_138473 NM_138479 NM_138485 NM_138576 NM_138640 NM_138774 NM_138996 NM_138998 NM_139201 NM_139323 NM_144490 NM_144498 NM_144577 NM_144583 NM_144677 NM_144974 NM_144976 NM_145112 NM_145113 NM_145173 NM_145175 NM_145323 NM_145324 NM_145349 NM_145351 NM_145639 NM_145640 NM_145641 NM_145642 NM_145660 NM_145727 NM_145730 NM_147164 NM_152236 NM_152237 NM_152281 NM_152418 NM_152441 NM_152461 NM_152494 NM_152509 NM_152588 NM_152600 NM_152722 NM_153256 NM_153270 NM_153274 NM_153321 NM_153322 NM_153347 NM_153367 NM_153451 NM_153486 NM_153631 NM_153632 NM_153675 NM_153705 NM_153812 NM_170600 NM_170607 NM_170705 NM_172037 NM_172087 NM_172088 NM_172089 NM_172097 NM_172344 NM_173466 NM_173475 NM_173492 NM_173510 NM_173511 NM_173609 NM_173660 NM_173795 NM_173804 NM_175569 NM_175736 NM_175847 NM_175898 NM_175907 NM_176806 NM_176816 NM_177549 NM_177938 NM_177939 NM_177983 NM_178136 NM_178145 NM_178172 NM_178326 NM_178502 NM_178520 NM_178578 NM_178579 NM_178814 NM_178823 NM_178857 NM_181349 NM_181672 NM_181673 NM_181776 NM_182501 NM_182508 NM_182517 NM_182641 NM_182712 NM_182744 NM_182752 NM_182894 NM_182910 NM_182912 NM_182913 NM_182914 NM_182920 NM_182970 NM_182972 NM_183234 NM_183235 NM_183236 NM_183418 NM_194252 NM_194278 NM_194286 NM_194310 NM_194429 NM_194436 NM_198040 NM_198053 NM_198196 NM_198204 NM_198205 NM_198324 NM_198442 NM_198480 NM_198511 NM_198545 NM_198834 NM_198835 NM_198836 NM_198837 NM_198838 NM_198839 NM_198859 NM_198900 NM_198955 NM_199169 NM_199170 NM_199171 NM_199205 NM_199368 NM_201428 NM_201429 NM_201430 NM_201559 NM_201567 NM_201570 NM_201571 NM_201572 NM_201590 NM_201593 NM_201596 NM_201597 NM_203327 NM_203329 NM_203330 NM_203331 NM_203339 NM_203382 NM_203417 NM_203418 NM_206813 NM_206814 NM_207012 NM_207032 NM_207033 NM_207034 NM_207117 NM_207126 NM_207129 NM_207306 NM_207309 NM_207313 NM_207317 NM_207333 NM_207362 NM_207380 NM_207426 NM_207442 NM_207460 NM_207461 NM_207473 NM_207483 NM_207495 NM_207506 NM_207577 NM_212467 NM_212469 XM_027307 XM_028810 XM_037523 XM_050278 XM_087386 XM_113871 XM_172968 XM_208524 XM_208847 XM_209429 XM_209607 XM_290401 XM_290540 XM_290854 XM_295213 XM_371181 XM_372004 XM_372035 XM_372110 XM_372193 XM_372267 XM_373659 XM_373822 XM_373896 XM_374589 XM_374768 XM_375353 XM_375491 XM_375928 XM_376241 XM_376454 XM_376550 XM_376560 XM_376602 XM_376658 XM_376720 XM_378236 XM_378299 XM_378379 XM_378473 XM_378542 XM_378617 XM_378661 XM_378678 XM_378793 XM_378799 XM_378842 XM_378861 XM_378908 XM_378946 XM_378976 XM_379029 XM_379145 XM_379154 XM_379309 XM_379391 XM_379417 XM_379452 XM_379704 XM_379720 XM_379820 XM_379877 XM_379897 XM_379920 XM_379967 XM_380103 XM_495890 XM_495902 XM_496690 XM_496724 XM_496836 XM_496895 XM_497067 XM_497080 XM_498440 XM_498446 XM_498473 XM_498511 XM_498661 XM_498680 XM_498736 XM_498737 XM_498752 XM_498841 XM_498900 XM_498907 XM_499047 XM_499056 XM_499323 XM_499362 XM_499502 XM_499503 XM_499570 XM_499576	Genes with multiple seed matches: NM_000599 NM_000891 NM_001001789 NM_001013649 NM_001013721 NM_001024598 NM_002478 NM_002613 NM_003045 NM_003312 NM_003804 NM_004973 NM_005116 NM_005329 NM_006711 NM_014593 NM_014665 NM_014835 NM_014850 NM_015035 NM_015085 NM_015253 NM_018043 NM_018844 NM_019613 NM_020429 NM_021784 NM_022842 NM_024492 NM_030574 NM_030643 NM_030661 NM_031268 NM_080594 NM_138640 NM_144498 NM_145660 NM_145727 NM_152722 NM_153631 NM_153632 NM_153675 NM_170607 NM_173795 NM_181349 NM_194278 NM_198204 NM_198205 NM_203327 NM_207495 XM_290540 XM_380103 XM_496836 XM_498841 XM_499362

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA