VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gcacuuccagagauucguu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1041
.
Total Genes with multiple seed matches:
40
.
Genes with at least one seed match:
NM_000033 NM_000112 NM_000135 NM_000214 NM_000248 NM_000351 NM_000369 NM_000402 NM_000430 NM_000448 NM_000462 NM_000522 NM_000555 NM_000579 NM_000599 NM_000605 NM_000618 NM_000624 NM_000663 NM_000664 NM_000705 NM_000756 NM_000814 NM_000868 NM_000891 NM_000895 NM_000898 NM_000903 NM_000922 NM_000931 NM_000950 NM_000953 NM_000983 NM_000998 NM_001001395 NM_001001557 NM_001001675 NM_001001680 NM_001001693 NM_001001695 NM_001001700 NM_001001732 NM_001001890 NM_001001927 NM_001001928 NM_001001929 NM_001001930 NM_001002814 NM_001002860 NM_001002909 NM_001002912 NM_001003407 NM_001003408 NM_001003674 NM_001003675 NM_001004051 NM_001004300 NM_001004439 NM_001004441 NM_001005266 NM_001005267 NM_001005268 NM_001005269 NM_001005409 NM_001005412 NM_001005845 NM_001008408 NM_001008491 NM_001008492 NM_001008496 NM_001008539 NM_001008544 NM_001009553 NM_001009931 NM_001010888 NM_001010908 NM_001010915 NM_001010986 NM_001011655 NM_001011666 NM_001012239 NM_001012339 NM_001012512 NM_001012513 NM_001012756 NM_001012969 NM_001013637 NM_001013640 NM_001013655 NM_001013682 NM_001013691 NM_001013695 NM_001013708 NM_001013713 NM_001013746 NM_001014279 NM_001014972 NM_001017915 NM_001017963 NM_001017995 NM_001017998 NM_001018054 NM_001018111 NM_001022 NM_001024592 NM_001024666 NM_001024680 NM_001025079 NM_001025080 NM_001025266 NM_001039 NM_001094 NM_001123 NM_001149 NM_001159 NM_001186 NM_001271 NM_001304 NM_001333 NM_001412 NM_001415 NM_001438 NM_001521 NM_001546 NM_001554 NM_001558 NM_001564 NM_001585 NM_001616 NM_001717 NM_001723 NM_001754 NM_001759 NM_001777 NM_001791 NM_001806 NM_001838 NM_001859 NM_001942 NM_001981 NM_001995 NM_002006 NM_002019 NM_002091 NM_002094 NM_002099 NM_002166 NM_002182 NM_002210 NM_002214 NM_002221 NM_002232 NM_002235 NM_002262 NM_002313 NM_002318 NM_002334 NM_002342 NM_002367 NM_002397 NM_002402 NM_002465 NM_002579 NM_002617 NM_002655 NM_002667 NM_002699 NM_002709 NM_002717 NM_002725 NM_002731 NM_002809 NM_002849 NM_002886 NM_002891 NM_002918 NM_002938 NM_003038 NM_003046 NM_003059 NM_003082 NM_003094 NM_003108 NM_003155 NM_003181 NM_003192 NM_003206 NM_003234 NM_003255 NM_003288 NM_003318 NM_003342 NM_003412 NM_003417 NM_003439 NM_003473 NM_003474 NM_003480 NM_003486 NM_003557 NM_003615 NM_003629 NM_003644 NM_003714 NM_003715 NM_003759 NM_003800 NM_003816 NM_003887 NM_003956 NM_004063 NM_004086 NM_004090 NM_004094 NM_004096 NM_004099 NM_004109 NM_004115 NM_004125 NM_004133 NM_004204 NM_004206 NM_004227 NM_004267 NM_004273 NM_004334 NM_004338 NM_004392 NM_004404 NM_004431 NM_004469 NM_004473 NM_004495 NM_004507 NM_004554 NM_004571 NM_004631 NM_004649 NM_004651 NM_004725 NM_004727 NM_004734 NM_004737 NM_004738 NM_004742 NM_004744 NM_004751 NM_004755 NM_004797 NM_004808 NM_004815 NM_004837 NM_004838 NM_004849 NM_004904 NM_004906 NM_004992 NM_005036 NM_005065 NM_005076 NM_005086 NM_005177 NM_005185 NM_005207 NM_005226 NM_005249 NM_005262 NM_005336 NM_005348 NM_005397 NM_005400 NM_005417 NM_005419 NM_005433 NM_005522 NM_005539 NM_005541 NM_005573 NM_005575 NM_005578 NM_005613 NM_005647 NM_005672 NM_005700 NM_005711 NM_005792 NM_005816 NM_005870 NM_005877 NM_005907 NM_005966 NM_005986 NM_006036 NM_006038 NM_006107 NM_006155 NM_006165 NM_006265 NM_006361 NM_006375 NM_006386 NM_006432 NM_006454 NM_006459 NM_006476 NM_006493 NM_006526 NM_006538 NM_006544 NM_006581 NM_006597 NM_006602 NM_006620 NM_006624 NM_006625 NM_006674 NM_006675 NM_006682 NM_006720 NM_006721 NM_006722 NM_006752 NM_006800 NM_006825 NM_006868 NM_006873 NM_006890 NM_006924 NM_006969 NM_006984 NM_006999 NM_007001 NM_007034 NM_007055 NM_007084 NM_007174 NM_007249 NM_007334 NM_007371 NM_007375 NM_012080 NM_012102 NM_012129 NM_012174 NM_012211 NM_012233 NM_012234 NM_012257 NM_012262 NM_012281 NM_012309 NM_012328 NM_012388 NM_012424 NM_012443 NM_012465 NM_012484 NM_012485 NM_013236 NM_013276 NM_013282 NM_013300 NM_013357 NM_013995 NM_014035 NM_014061 NM_014240 NM_014246 NM_014292 NM_014293 NM_014310 NM_014333 NM_014339 NM_014358 NM_014384 NM_014411 NM_014469 NM_014497 NM_014552 NM_014553 NM_014556 NM_014606 NM_014636 NM_014668 NM_014732 NM_014735 NM_014746 NM_014777 NM_014797 NM_014803 NM_014804 NM_014811 NM_014819 NM_014836 NM_014858 NM_014864 NM_014910 NM_014912 NM_014919 NM_014940 NM_015005 NM_015020 NM_015025 NM_015027 NM_015033 NM_015045 NM_015053 NM_015076 NM_015085 NM_015111 NM_015137 NM_015253 NM_015254 NM_015266 NM_015271 NM_015275 NM_015278 NM_015345 NM_015349 NM_015369 NM_015431 NM_015455 NM_015553 NM_015569 NM_015577 NM_015602 NM_015691 NM_015900 NM_015980 NM_016021 NM_016026 NM_016044 NM_016068 NM_016115 NM_016132 NM_016133 NM_016207 NM_016212 NM_016220 NM_016221 NM_016308 NM_016337 NM_016424 NM_016467 NM_016485 NM_016523 NM_016530 NM_016542 NM_016544 NM_016545 NM_016564 NM_016603 NM_016831 NM_017412 NM_017423 NM_017425 NM_017509 NM_017522 NM_017523 NM_017549 NM_017551 NM_017577 NM_017656 NM_017694 NM_017699 NM_017740 NM_017759 NM_017770 NM_017811 NM_017824 NM_017866 NM_017872 NM_017882 NM_017887 NM_017896 NM_017968 NM_018028 NM_018059 NM_018067 NM_018082 NM_018088 NM_018099 NM_018126 NM_018144 NM_018168 NM_018170 NM_018181 NM_018191 NM_018240 NM_018246 NM_018254 NM_018263 NM_018266 NM_018267 NM_018283 NM_018285 NM_018290 NM_018316 NM_018324 NM_018335 NM_018351 NM_018357 NM_018362 NM_018370 NM_018374 NM_018409 NM_018439 NM_018479 NM_018566 NM_018640 NM_018702 NM_018836 NM_018847 NM_018930 NM_018947 NM_018962 NM_018999 NM_019000 NM_019021 NM_019022 NM_019061 NM_019067 NM_019087 NM_019088 NM_019117 NM_019613 NM_020064 NM_020119 NM_020131 NM_020153 NM_020199 NM_020208 NM_020231 NM_020310 NM_020341 NM_020367 NM_020424 NM_020546 NM_020673 NM_020686 NM_020710 NM_020728 NM_020769 NM_020771 NM_020772 NM_020773 NM_020810 NM_020825 NM_020851 NM_020870 NM_020880 NM_020899 NM_020927 NM_020987 NM_021003 NM_021038 NM_021067 NM_021111 NM_021572 NM_021638 NM_021813 NM_021814 NM_021912 NM_021970 NM_022105 NM_022141 NM_022153 NM_022160 NM_022341 NM_022349 NM_022366 NM_022405 NM_022445 NM_022469 NM_022758 NM_022893 NM_023006 NM_023011 NM_023938 NM_024019 NM_024294 NM_024345 NM_024348 NM_024408 NM_024513 NM_024522 NM_024561 NM_024639 NM_024654 NM_024664 NM_024665 NM_024713 NM_024830 NM_024841 NM_024854 NM_024865 NM_024882 NM_024899 NM_024930 NM_024959 NM_025010 NM_025040 NM_025047 NM_025097 NM_025134 NM_025138 NM_025146 NM_025191 NM_025204 NM_025214 NM_025219 NM_030568 NM_030582 NM_030626 NM_030639 NM_030655 NM_030805 NM_030806 NM_030881 NM_030885 NM_030940 NM_030964 NM_031282 NM_031283 NM_031308 NM_031457 NM_031461 NM_031462 NM_031463 NM_031892 NM_032148 NM_032208 NM_032256 NM_032276 NM_032316 NM_032329 NM_032373 NM_032382 NM_032493 NM_032505 NM_032554 NM_032630 NM_032689 NM_032706 NM_032727 NM_032782 NM_032797 NM_032813 NM_032823 NM_032827 NM_032869 NM_032873 NM_032900 NM_032932 NM_033053 NM_033089 NM_033224 NM_033226 NM_033274 NM_033285 NM_033300 NM_033393 NM_033414 NM_033428 NM_033429 NM_033515 NM_033656 NM_052832 NM_052917 NM_052952 NM_052957 NM_053006 NM_053277 NM_054030 NM_058178 NM_058187 NM_078629 NM_078630 NM_080387 NM_080390 NM_080628 NM_080668 NM_080687 NM_080759 NM_080760 NM_080796 NM_130443 NM_130444 NM_130445 NM_130759 NM_130806 NM_130838 NM_130839 NM_130846 NM_133332 NM_133333 NM_133443 NM_133642 NM_134434 NM_138399 NM_138409 NM_138437 NM_138492 NM_138563 NM_138564 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_138781 NM_138783 NM_138819 NM_138969 NM_139016 NM_139279 NM_139321 NM_144654 NM_144968 NM_144975 NM_144996 NM_145010 NM_145177 NM_145187 NM_145188 NM_145189 NM_145190 NM_145257 NM_145295 NM_145296 NM_145658 NM_145863 NM_147194 NM_148920 NM_152235 NM_152253 NM_152265 NM_152280 NM_152305 NM_152387 NM_152389 NM_152390 NM_152395 NM_152407 NM_152417 NM_152422 NM_152475 NM_152488 NM_152527 NM_152531 NM_152624 NM_152749 NM_152780 NM_152888 NM_152903 NM_153020 NM_153034 NM_153035 NM_153201 NM_153207 NM_153332 NM_153346 NM_153347 NM_153348 NM_153442 NM_153448 NM_153487 NM_153620 NM_153683 NM_153688 NM_153717 NM_153815 NM_153818 NM_170719 NM_170768 NM_172005 NM_172239 NM_172241 NM_172242 NM_172346 NM_173463 NM_173484 NM_173511 NM_173522 NM_173523 NM_173546 NM_173609 NM_173611 NM_173632 NM_173633 NM_173683 NM_173694 NM_173700 NM_173854 NM_174890 NM_174901 NM_174950 NM_175607 NM_175612 NM_175870 NM_175898 NM_175920 NM_175922 NM_175929 NM_177424 NM_177524 NM_177525 NM_177952 NM_177990 NM_177995 NM_178008 NM_178151 NM_178152 NM_178153 NM_178498 NM_178509 NM_181354 NM_181481 NM_181482 NM_181483 NM_181491 NM_181621 NM_181724 NM_181756 NM_181782 NM_182314 NM_182526 NM_182564 NM_182621 NM_182682 NM_182704 NM_182734 NM_182740 NM_182760 NM_182848 NM_182896 NM_182898 NM_182899 NM_182920 NM_182948 NM_182960 NM_182971 NM_183238 NM_183377 NM_194283 NM_194294 NM_194303 NM_197956 NM_198066 NM_198141 NM_198155 NM_198158 NM_198159 NM_198177 NM_198178 NM_198182 NM_198194 NM_198196 NM_198225 NM_198274 NM_198291 NM_198442 NM_198480 NM_198493 NM_198569 NM_198595 NM_198715 NM_198793 NM_198835 NM_199133 NM_199139 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363 NM_199461 NM_201348 NM_201432 NM_201433 NM_203346 NM_203447 NM_205846 NM_206594 NM_206595 NM_206819 NM_206820 NM_206821 NM_206854 NM_206855 NM_206866 NM_206876 NM_206877 NM_207003 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207380 NM_207383 NM_207391 NM_207405 NM_207444 NM_207445 NM_207465 NM_207469 NM_207470 NM_207481 NM_207485 NM_207495 NM_213568 NM_213589 XM_017374 XM_029101 XM_038436 XM_039393 XM_051200 XM_068632 XM_069842 XM_113641 XM_114303 XM_114415 XM_165401 XM_166227 XM_209196 XM_209607 XM_290546 XM_291208 XM_291671 XM_370654 XM_371074 XM_371139 XM_371369 XM_371590 XM_371760 XM_371956 XM_372013 XM_372019 XM_372028 XM_372030 XM_372193 XM_373456 XM_373468 XM_373627 XM_374529 XM_374912 XM_375081 XM_375606 XM_376018 XM_376241 XM_376550 XM_376560 XM_376658 XM_376784 XM_376905 XM_378203 XM_378272 XM_378430 XM_378511 XM_378545 XM_378590 XM_378735 XM_378751 XM_378756 XM_378970 XM_379030 XM_379096 XM_379184 XM_379231 XM_379406 XM_379454 XM_379458 XM_379547 XM_379637 XM_379702 XM_379850 XM_379897 XM_379927 XM_379932 XM_380042 XM_495960 XM_496170 XM_496264 XM_496272 XM_496436 XM_496467 XM_496690 XM_496692 XM_496844 XM_496907 XM_496945 XM_496946 XM_496947 XM_496948 XM_496949 XM_496951 XM_496952 XM_496953 XM_496954 XM_496955 XM_496956 XM_496957 XM_496961 XM_496981 XM_496983 XM_496984 XM_496985 XM_498446 XM_498464 XM_498467 XM_498481 XM_498489 XM_498491 XM_498497 XM_498534 XM_498559 XM_498561 XM_498563 XM_498569 XM_498572 XM_498704 XM_498752 XM_498917 XM_498952 XM_499000 XM_499027 XM_499076 XM_499182 XM_499343 XM_499366 XM_499502 XM_499576 XM_499594 XM_499597 XR_000167 XR_000182 XR_000195
Genes with multiple seed matches:
NM_000522 NM_000579 NM_000868 NM_001001890 NM_001001928 NM_001001929 NM_001001930 NM_001017995 NM_001585 NM_001754 NM_004744 NM_005036 NM_006493 NM_015085 NM_015349 NM_016544 NM_017968 NM_018409 NM_018702 NM_018999 NM_020208 NM_020546 NM_022405 NM_022445 NM_138492 NM_152387 NM_153207 NM_182960 NM_205846 NM_207495 NM_213589 XM_038436 XM_039393 XM_051200 XM_209607 XM_370654 XM_374912 XM_378272 XM_379927 XM_496690
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)