VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gcacuacagcauacaucgu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1015
.
Total Genes with multiple seed matches:
65
.
Genes with at least one seed match:
NM_000088 NM_000194 NM_000218 NM_000231 NM_000278 NM_000351 NM_000353 NM_000369 NM_000393 NM_000398 NM_000430 NM_000451 NM_000452 NM_000525 NM_000617 NM_000632 NM_000634 NM_000664 NM_000675 NM_000679 NM_000693 NM_000719 NM_000721 NM_000744 NM_000786 NM_000809 NM_000870 NM_001001188 NM_001001330 NM_001001549 NM_001001550 NM_001001555 NM_001001561 NM_001001687 NM_001001690 NM_001001693 NM_001001694 NM_001001699 NM_001001704 NM_001001789 NM_001001851 NM_001001870 NM_001001874 NM_001001891 NM_001002233 NM_001002758 NM_001002799 NM_001002811 NM_001002812 NM_001002814 NM_001002914 NM_001003679 NM_001003712 NM_001003790 NM_001003791 NM_001003940 NM_001003942 NM_001003943 NM_001004285 NM_001004286 NM_001004301 NM_001004319 NM_001005387 NM_001005388 NM_001006610 NM_001006616 NM_001007024 NM_001007025 NM_001007094 NM_001008408 NM_001008493 NM_001008657 NM_001008658 NM_001008801 NM_001009956 NM_001009960 NM_001010851 NM_001010867 NM_001010883 NM_001010974 NM_001011537 NM_001011664 NM_001012420 NM_001012626 NM_001012984 NM_001013415 NM_001013438 NM_001013439 NM_001013637 NM_001013708 NM_001013722 NM_001013723 NM_001014283 NM_001014439 NM_001014809 NM_001015 NM_001017405 NM_001017440 NM_001017523 NM_001018067 NM_001018068 NM_001018069 NM_001018072 NM_001018112 NM_001024457 NM_001024669 NM_001024670 NM_001024843 NM_001024912 NM_001025077 NM_001025079 NM_001025080 NM_001025100 NM_001041 NM_001093 NM_001099 NM_001116 NM_001125 NM_001126 NM_001141 NM_001149 NM_001165 NM_001203 NM_001222 NM_001224 NM_001269 NM_001313 NM_001353 NM_001354 NM_001363 NM_001419 NM_001427 NM_001449 NM_001518 NM_001536 NM_001543 NM_001546 NM_001556 NM_001676 NM_001678 NM_001712 NM_001763 NM_001768 NM_001777 NM_001905 NM_001932 NM_001941 NM_002025 NM_002043 NM_002048 NM_002055 NM_002072 NM_002088 NM_002160 NM_002190 NM_002213 NM_002250 NM_002254 NM_002265 NM_002282 NM_002293 NM_002319 NM_002355 NM_002523 NM_002568 NM_002610 NM_002693 NM_002725 NM_002737 NM_002745 NM_002832 NM_002834 NM_002839 NM_002849 NM_002898 NM_002957 NM_003031 NM_003047 NM_003084 NM_003205 NM_003236 NM_003239 NM_003252 NM_003269 NM_003324 NM_003371 NM_003373 NM_003392 NM_003412 NM_003421 NM_003458 NM_003479 NM_003486 NM_003488 NM_003592 NM_003593 NM_003644 NM_003679 NM_003681 NM_003687 NM_003719 NM_003727 NM_003742 NM_003791 NM_003820 NM_003844 NM_003898 NM_003901 NM_003916 NM_003939 NM_003966 NM_003987 NM_003988 NM_004030 NM_004037 NM_004252 NM_004274 NM_004311 NM_004319 NM_004321 NM_004363 NM_004368 NM_004397 NM_004421 NM_004457 NM_004473 NM_004507 NM_004518 NM_004595 NM_004598 NM_004609 NM_004612 NM_004694 NM_004696 NM_004727 NM_004781 NM_004823 NM_004839 NM_004859 NM_004871 NM_004921 NM_004928 NM_004931 NM_004946 NM_004978 NM_005010 NM_005012 NM_005032 NM_005087 NM_005109 NM_005116 NM_005160 NM_005230 NM_005259 NM_005311 NM_005359 NM_005370 NM_005386 NM_005391 NM_005426 NM_005475 NM_005613 NM_005632 NM_005655 NM_005665 NM_005715 NM_005783 NM_005806 NM_005822 NM_005882 NM_005885 NM_005943 NM_005955 NM_005968 NM_006007 NM_006037 NM_006067 NM_006085 NM_006212 NM_006216 NM_006242 NM_006256 NM_006312 NM_006317 NM_006353 NM_006389 NM_006393 NM_006496 NM_006510 NM_006560 NM_006568 NM_006603 NM_006690 NM_006700 NM_006773 NM_006777 NM_006823 NM_006827 NM_006888 NM_006931 NM_006959 NM_007017 NM_007034 NM_007079 NM_007117 NM_007174 NM_007214 NM_007231 NM_007249 NM_007270 NM_007326 NM_007345 NM_007368 NM_012151 NM_012155 NM_012171 NM_012184 NM_012234 NM_012247 NM_012301 NM_012325 NM_012339 NM_012398 NM_012405 NM_012479 NM_012481 NM_013272 NM_013284 NM_013313 NM_013343 NM_013345 NM_013366 NM_014000 NM_014069 NM_014080 NM_014240 NM_014279 NM_014324 NM_014353 NM_014356 NM_014460 NM_014468 NM_014484 NM_014517 NM_014519 NM_014607 NM_014616 NM_014623 NM_014635 NM_014646 NM_014700 NM_014702 NM_014704 NM_014715 NM_014737 NM_014739 NM_014751 NM_014754 NM_014755 NM_014762 NM_014777 NM_014781 NM_014799 NM_014801 NM_014811 NM_014829 NM_014836 NM_014850 NM_014869 NM_014888 NM_014919 NM_014974 NM_014997 NM_015000 NM_015039 NM_015061 NM_015075 NM_015084 NM_015088 NM_015090 NM_015099 NM_015127 NM_015150 NM_015155 NM_015192 NM_015205 NM_015215 NM_015229 NM_015265 NM_015278 NM_015315 NM_015359 NM_015378 NM_015417 NM_015523 NM_015576 NM_015609 NM_015640 NM_015677 NM_015678 NM_015836 NM_015993 NM_016022 NM_016045 NM_016083 NM_016087 NM_016147 NM_016196 NM_016248 NM_016281 NM_016351 NM_016389 NM_016436 NM_016534 NM_016540 NM_016544 NM_016611 NM_016735 NM_017555 NM_017594 NM_017637 NM_017644 NM_017731 NM_017751 NM_017760 NM_017772 NM_017787 NM_017801 NM_017843 NM_017847 NM_017853 NM_017927 NM_017928 NM_017951 NM_017956 NM_017979 NM_018017 NM_018037 NM_018089 NM_018156 NM_018172 NM_018185 NM_018212 NM_018215 NM_018280 NM_018290 NM_018298 NM_018315 NM_018316 NM_018374 NM_018420 NM_018464 NM_018469 NM_018602 NM_018622 NM_018683 NM_018719 NM_018964 NM_018998 NM_019041 NM_019086 NM_019841 NM_020037 NM_020038 NM_020119 NM_020168 NM_020208 NM_020241 NM_020310 NM_020326 NM_020335 NM_020338 NM_020421 NM_020452 NM_020465 NM_020468 NM_020673 NM_020708 NM_020717 NM_020782 NM_020802 NM_020807 NM_020830 NM_020841 NM_020896 NM_020927 NM_020987 NM_021079 NM_021129 NM_021164 NM_021183 NM_021200 NM_021267 NM_021619 NM_021722 NM_021723 NM_021806 NM_021927 NM_021961 NM_022067 NM_022071 NM_022102 NM_022333 NM_022405 NM_022436 NM_022460 NM_022491 NM_022571 NM_022648 NM_022736 NM_022753 NM_022758 NM_022766 NM_022893 NM_022898 NM_022910 NM_023032 NM_023084 NM_023086 NM_023087 NM_023088 NM_023927 NM_023934 NM_024040 NM_024294 NM_024342 NM_024423 NM_024546 NM_024607 NM_024633 NM_024649 NM_024662 NM_024738 NM_024793 NM_024877 NM_024878 NM_024913 NM_024935 NM_025026 NM_025049 NM_025151 NM_025191 NM_025193 NM_025208 NM_025235 NM_030568 NM_030579 NM_030622 NM_030636 NM_030650 NM_030651 NM_030773 NM_030788 NM_030793 NM_030813 NM_030817 NM_030895 NM_030940 NM_030945 NM_030950 NM_030979 NM_031203 NM_031265 NM_031295 NM_031416 NM_031435 NM_031442 NM_031468 NM_031469 NM_031478 NM_031886 NM_031908 NM_032019 NM_032108 NM_032189 NM_032192 NM_032219 NM_032233 NM_032288 NM_032294 NM_032307 NM_032317 NM_032347 NM_032446 NM_032466 NM_032468 NM_032491 NM_032506 NM_032538 NM_032611 NM_032735 NM_032785 NM_032811 NM_032826 NM_032843 NM_032853 NM_032864 NM_032866 NM_032882 NM_032883 NM_032895 NM_032932 NM_032974 NM_032983 NM_032984 NM_032999 NM_033000 NM_033001 NM_033086 NM_033100 NM_033135 NM_033181 NM_033304 NM_033404 NM_033407 NM_033503 NM_033551 NM_033632 NM_033637 NM_033647 NM_052816 NM_052874 NM_052879 NM_052887 NM_052906 NM_052966 NM_052978 NM_053056 NM_053279 NM_057168 NM_057179 NM_058175 NM_058183 NM_058219 NM_058243 NM_078628 NM_080415 NM_080417 NM_080542 NM_080543 NM_080588 NM_080589 NM_080612 NM_080621 NM_080625 NM_080628 NM_080660 NM_080738 NM_080915 NM_080917 NM_080927 NM_130391 NM_130392 NM_130393 NM_130465 NM_130806 NM_130845 NM_130846 NM_133262 NM_133265 NM_133326 NM_133327 NM_133332 NM_133333 NM_133334 NM_133443 NM_133451 NM_133456 NM_133463 NM_133476 NM_134425 NM_138284 NM_138390 NM_138479 NM_138494 NM_138566 NM_138576 NM_138699 NM_138737 NM_138809 NM_138967 NM_138992 NM_138998 NM_139156 NM_139275 NM_144607 NM_144621 NM_144996 NM_145004 NM_145065 NM_145173 NM_145206 NM_145292 NM_145293 NM_145638 NM_145663 NM_145734 NM_145798 NM_145818 NM_145861 NM_147134 NM_148915 NM_152296 NM_152322 NM_152372 NM_152472 NM_152563 NM_152569 NM_152595 NM_152615 NM_152630 NM_152701 NM_152721 NM_152731 NM_152738 NM_152870 NM_153029 NM_153215 NM_153239 NM_153256 NM_153263 NM_153812 NM_153816 NM_170705 NM_170706 NM_170773 NM_170774 NM_171827 NM_172000 NM_172169 NM_172170 NM_172171 NM_172172 NM_172173 NM_172206 NM_172214 NM_172215 NM_172241 NM_173172 NM_173481 NM_173580 NM_173643 NM_173661 NM_173669 NM_173681 NM_173823 NM_173831 NM_173851 NM_174869 NM_174890 NM_174911 NM_174936 NM_174972 NM_175063 NM_175567 NM_175568 NM_175878 NM_177427 NM_177532 NM_178014 NM_178129 NM_178145 NM_178225 NM_178226 NM_178424 NM_178439 NM_178502 NM_178516 NM_178526 NM_178565 NM_181041 NM_181435 NM_181453 NM_181504 NM_181505 NM_181523 NM_181524 NM_181689 NM_181701 NM_181723 NM_181797 NM_181798 NM_181839 NM_181870 NM_182501 NM_182503 NM_182518 NM_182534 NM_182579 NM_182583 NM_182585 NM_182612 NM_182734 NM_182779 NM_182812 NM_182827 NM_182831 NM_182896 NM_182920 NM_182962 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232 NM_183416 NM_194252 NM_194325 NM_198074 NM_198225 NM_198318 NM_198319 NM_198444 NM_198465 NM_198493 NM_198499 NM_198501 NM_198506 NM_198508 NM_198513 NM_198527 NM_198542 NM_198700 NM_198793 NM_198799 NM_198835 NM_199045 NM_199054 NM_199072 NM_199132 NM_199135 NM_199188 NM_199190 NM_199242 NM_199324 NM_199330 NM_199331 NM_199332 NM_199341 NM_199358 NM_201263 NM_201277 NM_201348 NM_201397 NM_201400 NM_201431 NM_201432 NM_201433 NM_201565 NM_201598 NM_201628 NM_203327 NM_203372 NM_203382 NM_203395 NM_203397 NM_203404 NM_203472 NM_203488 NM_205836 NM_205845 NM_206538 NM_206813 NM_206814 NM_206835 NM_206887 NM_207036 NM_207037 NM_207038 NM_207040 NM_207125 NM_207126 NM_207127 NM_207129 NM_207305 NM_207348 NM_207366 NM_207367 NM_207393 NM_207411 NM_207459 NM_207497 NM_207505 NM_207506 NM_207581 NM_212464 NM_212467 NM_213594 NM_213606 NM_213609 XM_016532 XM_038150 XM_039393 XM_039515 XM_042936 XM_043493 XM_048898 XM_087386 XM_097351 XM_114166 XM_116980 XM_117294 XM_167152 XM_208320 XM_209227 XM_290502 XM_292012 XM_292765 XM_296817 XM_370603 XM_370843 XM_371254 XM_371588 XM_372035 XM_372090 XM_372193 XM_372233 XM_372774 XM_373472 XM_373547 XM_373645 XM_373775 XM_373894 XM_374078 XM_374096 XM_374108 XM_374111 XM_374341 XM_374768 XM_375307 XM_375527 XM_375558 XM_375646 XM_375669 XM_376111 XM_376207 XM_376463 XM_376567 XM_376679 XM_378203 XM_378312 XM_378329 XM_378379 XM_378389 XM_378390 XM_378437 XM_378494 XM_378507 XM_378511 XM_378617 XM_378620 XM_378649 XM_378708 XM_378760 XM_378763 XM_378807 XM_378914 XM_378946 XM_378971 XM_379060 XM_379099 XM_379135 XM_379136 XM_379320 XM_379406 XM_379482 XM_379485 XM_379541 XM_379595 XM_379638 XM_379774 XM_379927 XM_379933 XM_380098 XM_380104 XM_495807 XM_495844 XM_495950 XM_496134 XM_496241 XM_496328 XM_496379 XM_496467 XM_496575 XM_496879 XM_496976 XM_497092 XM_498457 XM_498491 XM_498497 XM_498500 XM_498528 XM_498620 XM_498649 XM_498693 XM_498704 XM_498718 XM_498739 XM_498825 XM_498877 XM_498910 XM_498912 XM_498917 XM_498961 XM_499084 XM_499123 XM_499298 XM_499539 XM_499586 XR_000194 XR_000227 XR_000254 XR_000265 XR_000266 XR_000273
Genes with multiple seed matches:
NM_001001693 NM_001003940 NM_001003942 NM_001003943 NM_001005387 NM_001007094 NM_001008493 NM_001009956 NM_001009960 NM_001024457 NM_001165 NM_002725 NM_002957 NM_003421 NM_003644 NM_004518 NM_004859 NM_005968 NM_006827 NM_006959 NM_007214 NM_007249 NM_012184 NM_015265 NM_016147 NM_016248 NM_017594 NM_018212 NM_018683 NM_020037 NM_020038 NM_023934 NM_031203 NM_032932 NM_033503 NM_053279 NM_080625 NM_080927 NM_138494 NM_138998 NM_153239 NM_172172 NM_173681 NM_182534 NM_182583 NM_182962 NM_198444 NM_198506 NM_199135 NM_199358 NM_201348 NM_201397 NM_201432 NM_201433 NM_201565 NM_201628 NM_206835 NM_206887 XM_374111 XM_375646 XM_376463 XM_378379 XM_378708 XM_497092 XM_498500
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)