VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"aaaccaacgguuuacgucuac"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
682
.
Total Genes with multiple seed matches:
28
.
Genes with at least one seed match:
NM_000053 NM_000074 NM_000100 NM_000109 NM_000141 NM_000304 NM_000334 NM_000351 NM_000428 NM_000430 NM_000503 NM_000530 NM_000545 NM_000579 NM_000629 NM_000767 NM_000821 NM_000851 NM_000877 NM_000891 NM_000965 NM_001001188 NM_001001396 NM_001001684 NM_001001789 NM_001003407 NM_001003408 NM_001003682 NM_001003698 NM_001003699 NM_001004197 NM_001004354 NM_001004355 NM_001005388 NM_001005918 NM_001007024 NM_001007025 NM_001007214 NM_001007559 NM_001008408 NM_001008537 NM_001010000 NM_001010867 NM_001010888 NM_001010913 NM_001011666 NM_001012981 NM_001013640 NM_001013698 NM_001013721 NM_001014443 NM_001017924 NM_001018009 NM_001018116 NM_001023562 NM_001024733 NM_001044 NM_001056 NM_001165 NM_001286 NM_001287 NM_001387 NM_001390 NM_001439 NM_001543 NM_001544 NM_001548 NM_001609 NM_001619 NM_001621 NM_001627 NM_001650 NM_001684 NM_001707 NM_001740 NM_001795 NM_001829 NM_001860 NM_001945 NM_002145 NM_002189 NM_002206 NM_002313 NM_002334 NM_002397 NM_002561 NM_002581 NM_002595 NM_002610 NM_002737 NM_002746 NM_002834 NM_002840 NM_002874 NM_002915 NM_002955 NM_002996 NM_003070 NM_003216 NM_003326 NM_003388 NM_003557 NM_003605 NM_003624 NM_003679 NM_003681 NM_003709 NM_003808 NM_003970 NM_004006 NM_004007 NM_004009 NM_004010 NM_004011 NM_004012 NM_004013 NM_004014 NM_004015 NM_004016 NM_004017 NM_004018 NM_004020 NM_004021 NM_004022 NM_004023 NM_004028 NM_004098 NM_004132 NM_004171 NM_004235 NM_004273 NM_004275 NM_004293 NM_004309 NM_004364 NM_004419 NM_004430 NM_004438 NM_004473 NM_004516 NM_004535 NM_004566 NM_004575 NM_004673 NM_004734 NM_004758 NM_004844 NM_004845 NM_004871 NM_004892 NM_004898 NM_004904 NM_004907 NM_004915 NM_004992 NM_005040 NM_005057 NM_005116 NM_005144 NM_005148 NM_005194 NM_005197 NM_005329 NM_005335 NM_005381 NM_005436 NM_005449 NM_005463 NM_005515 NM_005603 NM_005637 NM_005686 NM_005730 NM_005732 NM_005736 NM_005802 NM_005819 NM_005845 NM_006042 NM_006051 NM_006091 NM_006190 NM_006253 NM_006276 NM_006277 NM_006319 NM_006359 NM_006371 NM_006418 NM_006464 NM_006508 NM_006527 NM_006590 NM_006599 NM_006620 NM_006623 NM_006626 NM_006627 NM_006648 NM_006693 NM_006720 NM_006738 NM_006838 NM_006855 NM_006898 NM_007084 NM_007085 NM_007087 NM_007088 NM_007103 NM_007198 NM_007200 NM_007229 NM_007320 NM_007322 NM_007349 NM_007368 NM_012069 NM_012192 NM_012234 NM_012282 NM_012286 NM_012395 NM_012402 NM_012430 NM_012431 NM_012475 NM_013382 NM_013397 NM_014112 NM_014328 NM_014333 NM_014339 NM_014341 NM_014354 NM_014388 NM_014412 NM_014427 NM_014504 NM_014631 NM_014665 NM_014690 NM_014723 NM_014724 NM_014739 NM_014808 NM_014819 NM_014820 NM_014830 NM_014844 NM_014858 NM_014862 NM_014880 NM_014909 NM_014910 NM_014911 NM_015020 NM_015063 NM_015085 NM_015090 NM_015094 NM_015100 NM_015102 NM_015111 NM_015227 NM_015229 NM_015254 NM_015330 NM_015353 NM_015359 NM_015447 NM_015455 NM_015478 NM_015544 NM_015626 NM_015678 NM_015714 NM_015892 NM_015948 NM_015995 NM_016026 NM_016083 NM_016152 NM_016217 NM_016219 NM_016255 NM_016269 NM_016272 NM_016322 NM_016530 NM_016559 NM_016572 NM_016626 NM_016818 NM_016930 NM_016932 NM_017542 NM_017575 NM_017643 NM_017713 NM_017723 NM_017806 NM_017953 NM_018048 NM_018051 NM_018101 NM_018131 NM_018155 NM_018170 NM_018221 NM_018283 NM_018312 NM_018321 NM_018342 NM_018841 NM_018999 NM_019074 NM_019595 NM_019618 NM_019845 NM_020038 NM_020143 NM_020163 NM_020180 NM_020443 NM_020456 NM_020524 NM_020648 NM_020661 NM_020695 NM_020728 NM_020773 NM_020794 NM_020801 NM_020802 NM_020825 NM_020871 NM_020918 NM_021038 NM_021101 NM_021116 NM_021735 NM_021736 NM_021737 NM_021925 NM_021945 NM_022102 NM_022103 NM_022139 NM_022377 NM_022459 NM_022473 NM_022492 NM_022767 NM_022773 NM_022897 NM_022969 NM_022970 NM_022972 NM_022975 NM_023009 NM_023028 NM_023029 NM_023030 NM_023031 NM_023067 NM_023077 NM_024054 NM_024312 NM_024317 NM_024522 NM_024725 NM_024759 NM_024792 NM_024866 NM_024871 NM_024875 NM_025010 NM_025079 NM_025191 NM_025202 NM_030783 NM_030816 NM_031282 NM_031304 NM_031308 NM_031438 NM_031442 NM_031908 NM_031922 NM_031954 NM_032047 NM_032121 NM_032153 NM_032179 NM_032294 NM_032382 NM_032421 NM_032451 NM_032489 NM_032505 NM_032557 NM_032564 NM_032569 NM_032622 NM_032737 NM_032804 NM_032855 NM_032900 NM_032975 NM_032980 NM_033034 NM_033093 NM_033121 NM_033181 NM_033313 NM_033512 NM_052822 NM_052847 NM_052876 NM_052917 NM_053045 NM_054035 NM_078483 NM_080551 NM_080792 NM_080828 NM_101395 NM_130437 NM_130438 NM_130440 NM_130759 NM_130771 NM_130809 NM_133168 NM_133169 NM_133172 NM_133173 NM_133174 NM_133175 NM_133176 NM_133443 NM_133482 NM_133634 NM_133635 NM_134264 NM_134265 NM_134422 NM_134423 NM_134424 NM_138400 NM_138434 NM_138707 NM_138713 NM_138714 NM_139045 NM_139075 NM_139076 NM_139246 NM_139248 NM_139284 NM_139290 NM_144507 NM_144666 NM_144683 NM_144767 NM_145043 NM_145044 NM_145047 NM_145230 NM_145285 NM_145752 NM_145756 NM_145762 NM_145763 NM_145865 NM_152235 NM_152253 NM_152409 NM_152515 NM_152557 NM_152569 NM_152675 NM_152745 NM_152789 NM_152835 NM_153207 NM_153247 NM_153321 NM_153322 NM_153343 NM_153498 NM_153607 NM_153619 NM_153636 NM_172058 NM_172059 NM_172060 NM_172087 NM_172088 NM_172089 NM_172200 NM_172206 NM_173214 NM_173354 NM_173527 NM_173576 NM_173580 NM_173588 NM_173590 NM_173621 NM_173654 NM_173661 NM_173872 NM_174972 NM_175064 NM_175080 NM_175898 NM_175922 NM_176815 NM_176825 NM_176871 NM_177539 NM_178008 NM_178273 NM_178276 NM_178500 NM_178514 NM_178836 NM_181041 NM_181314 NM_181336 NM_181504 NM_181523 NM_181524 NM_181726 NM_182487 NM_182509 NM_182562 NM_182568 NM_182617 NM_182621 NM_182758 NM_182898 NM_182899 NM_182962 NM_182970 NM_183397 NM_194277 NM_194303 NM_198458 NM_198524 NM_198533 NM_198704 NM_198705 NM_198706 NM_198707 NM_198708 NM_198797 NM_198990 NM_199265 NM_199296 NM_199418 NM_201399 NM_201520 NM_201613 NM_203327 NM_203423 NM_203463 NM_205848 NM_206817 NM_206818 NM_206835 NM_206853 NM_206854 NM_206855 NM_207015 NM_207171 NM_207174 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207335 NM_207359 NM_207404 NM_207406 NM_207426 NM_207451 NM_207470 NM_207502 NM_207627 NM_207628 NM_207629 NM_207630 NM_207645 NM_213598 XM_028217 XM_034872 XM_038436 XM_042066 XM_042936 XM_045421 XM_047355 XM_051081 XM_053966 XM_056455 XM_071712 XM_084529 XM_085463 XM_087672 XM_113641 XM_113947 XM_290502 XM_290737 XM_298151 XM_370536 XM_370995 XM_371204 XM_371461 XM_371474 XM_371542 XM_371783 XM_371943 XM_372716 XM_373704 XM_373742 XM_373798 XM_374013 XM_374460 XM_374842 XM_376148 XM_378358 XM_378399 XM_378535 XM_378756 XM_378860 XM_379273 XM_379456 XM_379459 XM_379595 XM_379840 XM_379858 XM_495881 XM_495888 XM_496156 XM_496408 XM_496894 XM_496898 XM_496899 XM_496905 XM_496907 XM_496912 XM_497080 XM_498439 XM_498452 XM_498508 XM_498511 XM_498742 XM_498752 XM_498933 XM_499022 XM_499051 XM_499084 XM_499093 XM_499314 XM_499321 XM_499328 XM_499330 XM_499333 XM_499338 XM_499343 XM_499354 XM_499356 XM_499539 XM_499569 XR_000184 XR_000190 XR_000254 XR_000294
Genes with multiple seed matches:
NM_001005388 NM_001010888 NM_001650 NM_002581 NM_004028 NM_004171 NM_004566 NM_004992 NM_006091 NM_015090 NM_021038 NM_052847 NM_153498 NM_198533 NM_198704 NM_198705 NM_198706 NM_198707 NM_198708 NM_206835 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 XM_038436 XM_084529
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)