VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gcaaugucaacgaccgacc"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
797
.
Total Genes with multiple seed matches:
34
.
Genes with at least one seed match:
NM_000029 NM_000080 NM_000084 NM_000090 NM_000199 NM_000222 NM_000278 NM_000332 NM_000356 NM_000368 NM_000385 NM_000423 NM_000434 NM_000451 NM_000683 NM_000685 NM_000702 NM_000759 NM_000842 NM_000860 NM_000870 NM_000891 NM_000899 NM_000931 NM_000964 NM_001001188 NM_001001349 NM_001001693 NM_001001716 NM_001001928 NM_001001929 NM_001001930 NM_001002034 NM_001002273 NM_001002274 NM_001002275 NM_001003940 NM_001003942 NM_001003943 NM_001004197 NM_001004434 NM_001004441 NM_001005387 NM_001005473 NM_001005914 NM_001006932 NM_001006939 NM_001007224 NM_001007269 NM_001007270 NM_001007271 NM_001007274 NM_001007275 NM_001007466 NM_001008408 NM_001008530 NM_001008544 NM_001008656 NM_001008710 NM_001008711 NM_001009584 NM_001009612 NM_001009996 NM_001010852 NM_001010854 NM_001011537 NM_001012509 NM_001013404 NM_001013642 NM_001013701 NM_001013710 NM_001013723 NM_001014336 NM_001014440 NM_001018082 NM_001018095 NM_001018099 NM_001020818 NM_001020819 NM_001020820 NM_001020821 NM_001024809 NM_001036 NM_001080 NM_001116 NM_001119 NM_001127 NM_001130 NM_001174 NM_001190 NM_001218 NM_001222 NM_001243 NM_001419 NM_001421 NM_001486 NM_001494 NM_001534 NM_001585 NM_001620 NM_001715 NM_001806 NM_001824 NM_001894 NM_001899 NM_002071 NM_002081 NM_002131 NM_002165 NM_002190 NM_002196 NM_002230 NM_002237 NM_002251 NM_002360 NM_002375 NM_002460 NM_002469 NM_002509 NM_002641 NM_002651 NM_002679 NM_002737 NM_002753 NM_002760 NM_002829 NM_002833 NM_002840 NM_002911 NM_002972 NM_003004 NM_003036 NM_003042 NM_003098 NM_003101 NM_003110 NM_003170 NM_003173 NM_003324 NM_003362 NM_003371 NM_003380 NM_003418 NM_003612 NM_003636 NM_003639 NM_003668 NM_003719 NM_003804 NM_003863 NM_003869 NM_003872 NM_003927 NM_003987 NM_003988 NM_003989 NM_003990 NM_003994 NM_004001 NM_004142 NM_004195 NM_004229 NM_004320 NM_004367 NM_004423 NM_004481 NM_004505 NM_004518 NM_004602 NM_004610 NM_004626 NM_004636 NM_004686 NM_004715 NM_004782 NM_004835 NM_004884 NM_004915 NM_004961 NM_004991 NM_004992 NM_005026 NM_005036 NM_005044 NM_005069 NM_005085 NM_005088 NM_005116 NM_005140 NM_005157 NM_005173 NM_005188 NM_005227 NM_005228 NM_005334 NM_005386 NM_005437 NM_005450 NM_005458 NM_005483 NM_005511 NM_005515 NM_005582 NM_005606 NM_005630 NM_005647 NM_005658 NM_005682 NM_005686 NM_005755 NM_005789 NM_005806 NM_005845 NM_005858 NM_005908 NM_006032 NM_006038 NM_006045 NM_006133 NM_006134 NM_006167 NM_006202 NM_006234 NM_006310 NM_006336 NM_006371 NM_006402 NM_006593 NM_006598 NM_006626 NM_006640 NM_006651 NM_006670 NM_006705 NM_006752 NM_006766 NM_006779 NM_006802 NM_006855 NM_006858 NM_006861 NM_006867 NM_006868 NM_006908 NM_006925 NM_006965 NM_007017 NM_007021 NM_007028 NM_007030 NM_007063 NM_007313 NM_007345 NM_007368 NM_009585 NM_012121 NM_012156 NM_012157 NM_012186 NM_012231 NM_012300 NM_012304 NM_012315 NM_012420 NM_012471 NM_013254 NM_013272 NM_013336 NM_013348 NM_013351 NM_013354 NM_013440 NM_013447 NM_014023 NM_014189 NM_014190 NM_014235 NM_014272 NM_014344 NM_014349 NM_014392 NM_014395 NM_014430 NM_014494 NM_014578 NM_014613 NM_014636 NM_014663 NM_014726 NM_014767 NM_014789 NM_014792 NM_014837 NM_014850 NM_014853 NM_014867 NM_014910 NM_014917 NM_014919 NM_014920 NM_015027 NM_015107 NM_015111 NM_015124 NM_015170 NM_015172 NM_015178 NM_015180 NM_015233 NM_015238 NM_015282 NM_015310 NM_015313 NM_015330 NM_015352 NM_015476 NM_015584 NM_015609 NM_015666 NM_016021 NM_016121 NM_016170 NM_016176 NM_016235 NM_016280 NM_016436 NM_016513 NM_016522 NM_016547 NM_016551 NM_016605 NM_016620 NM_016818 NM_017426 NM_017436 NM_017452 NM_017453 NM_017454 NM_017565 NM_017595 NM_017732 NM_017740 NM_017744 NM_017791 NM_017797 NM_017966 NM_018013 NM_018019 NM_018036 NM_018114 NM_018181 NM_018243 NM_018277 NM_018367 NM_018660 NM_018702 NM_018706 NM_018890 NM_018953 NM_018977 NM_018988 NM_019007 NM_019026 NM_019046 NM_019098 NM_019845 NM_019885 NM_020131 NM_020163 NM_020228 NM_020245 NM_020340 NM_020385 NM_020462 NM_020472 NM_020473 NM_020530 NM_020640 NM_020774 NM_020810 NM_020919 NM_020956 NM_020960 NM_020988 NM_020991 NM_021135 NM_021164 NM_021801 NM_021809 NM_021813 NM_021905 NM_021945 NM_021984 NM_021987 NM_021990 NM_021991 NM_022099 NM_022117 NM_022372 NM_022469 NM_022644 NM_022645 NM_022762 NM_022777 NM_022781 NM_022842 NM_022917 NM_023076 NM_023937 NM_024005 NM_024007 NM_024048 NM_024107 NM_024301 NM_024335 NM_024630 NM_024652 NM_024665 NM_024676 NM_024701 NM_024707 NM_024711 NM_024723 NM_024754 NM_024757 NM_024792 NM_024821 NM_024830 NM_024922 NM_024933 NM_025002 NM_025140 NM_025250 NM_030574 NM_030621 NM_030644 NM_030781 NM_030882 NM_030884 NM_030918 NM_030964 NM_031215 NM_031409 NM_031444 NM_031460 NM_031464 NM_031484 NM_031850 NM_031896 NM_032049 NM_032186 NM_032208 NM_032242 NM_032288 NM_032313 NM_032336 NM_032513 NM_032529 NM_032554 NM_032607 NM_032726 NM_032738 NM_032797 NM_032808 NM_032826 NM_032854 NM_032994 NM_033129 NM_033262 NM_033274 NM_033332 NM_033503 NM_033640 NM_033644 NM_033645 NM_048368 NM_052816 NM_052847 NM_052876 NM_052932 NM_052970 NM_053279 NM_053286 NM_058169 NM_058175 NM_058240 NM_080415 NM_080417 NM_080607 NM_080659 NM_080871 NM_080911 NM_130386 NM_130387 NM_130440 NM_130793 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133443 NM_133493 NM_138285 NM_138298 NM_138373 NM_138434 NM_138499 NM_138614 NM_138727 NM_138728 NM_138781 NM_138981 NM_139028 NM_139078 NM_139168 NM_139235 NM_139321 NM_144585 NM_144617 NM_144962 NM_145013 NM_145045 NM_145068 NM_145173 NM_145279 NM_145282 NM_145637 NM_145639 NM_145640 NM_145641 NM_145642 NM_145730 NM_145899 NM_145901 NM_145902 NM_145903 NM_145904 NM_145905 NM_145912 NM_148902 NM_152221 NM_152264 NM_152395 NM_152414 NM_152451 NM_152458 NM_152464 NM_152557 NM_152673 NM_152681 NM_152690 NM_152715 NM_152864 NM_152906 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921 NM_152942 NM_153008 NM_153208 NM_153214 NM_153239 NM_153256 NM_153264 NM_153378 NM_153442 NM_153456 NM_153463 NM_153683 NM_153746 NM_156036 NM_170711 NM_170720 NM_170721 NM_170740 NM_170781 NM_172037 NM_172130 NM_172169 NM_172170 NM_172171 NM_172172 NM_172173 NM_172219 NM_172220 NM_173156 NM_173201 NM_173460 NM_173536 NM_173549 NM_173582 NM_173646 NM_173803 NM_174945 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958 NM_175047 NM_175061 NM_175575 NM_175736 NM_175898 NM_175901 NM_175908 NM_175922 NM_175923 NM_176801 NM_176863 NM_176871 NM_177438 NM_177978 NM_177979 NM_177996 NM_178135 NM_178238 NM_178494 NM_178516 NM_178523 NM_178579 NM_178831 NM_178841 NM_181041 NM_181353 NM_181359 NM_181491 NM_181552 NM_181689 NM_181788 NM_182509 NM_182520 NM_182533 NM_182534 NM_182578 NM_182605 NM_182635 NM_182740 NM_182812 NM_182910 NM_182912 NM_182913 NM_182914 NM_182924 NM_182932 NM_182933 NM_182936 NM_182978 NM_183002 NM_183373 NM_194277 NM_194290 NM_194310 NM_194328 NM_194329 NM_194330 NM_194331 NM_194332 NM_197941 NM_198061 NM_198074 NM_198098 NM_198327 NM_198328 NM_198402 NM_198508 NM_198537 NM_198553 NM_198560 NM_198567 NM_198829 NM_198846 NM_198851 NM_198900 NM_198969 NM_198970 NM_199168 NM_199331 NM_199332 NM_199437 NM_199438 NM_199439 NM_201266 NM_201269 NM_201279 NM_201397 NM_201403 NM_201524 NM_201525 NM_201565 NM_201568 NM_201569 NM_201613 NM_203305 NM_203307 NM_203327 NM_203395 NM_203453 NM_206887 NM_206925 NM_207174 NM_207334 NM_207348 NM_207367 NM_207387 NM_207462 NM_207478 NM_207627 NM_207628 NM_207629 NM_207630 NM_207644 NM_212467 XM_040592 XM_044434 XM_048592 XM_084852 XM_088459 XM_117117 XM_208930 XM_209569 XM_291671 XM_370711 XM_370928 XM_371074 XM_373433 XM_373690 XM_373737 XM_373786 XM_374163 XM_374529 XM_375090 XM_376550 XM_377076 XM_378301 XM_378608 XM_378684 XM_378708 XM_378750 XM_378756 XM_378793 XM_378810 XM_378946 XM_379023 XM_379029 XM_379391 XM_379452 XM_379482 XM_379619 XM_379629 XM_379642 XM_379643 XM_379648 XM_380098 XM_495868 XM_495888 XM_495918 XM_495926 XM_496134 XM_496584 XM_496618 XM_496822 XM_497002 XM_497160 XM_498442 XM_498449 XM_498502 XM_498569 XM_498571 XM_498572 XM_498636 XM_498652 XM_498683 XM_498724 XM_498728 XM_498751 XM_498859 XM_498933 XM_498965 XM_499021 XM_499054 XM_499056 XM_499093 XM_499174 XM_499366 XM_499499 XM_499501 XM_499503 XM_499572 XM_499579 XR_000184 XR_000294
Genes with multiple seed matches:
NM_001001188 NM_001013642 NM_001014440 NM_001119 NM_001620 NM_002360 NM_003668 NM_004992 NM_006134 NM_006861 NM_007030 NM_014189 NM_014190 NM_014272 NM_014663 NM_015330 NM_020988 NM_023076 NM_032607 NM_139078 NM_144617 NM_153256 NM_153683 NM_176801 NM_181353 NM_181552 NM_182509 NM_182812 NM_207367 NM_207478 XM_040592 XM_371074 XR_000184 XR_000294
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)