VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gaucuucuggucuaaacga"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1396
.
Total Genes with multiple seed matches:
85
.
Genes with at least one seed match:
NM_000026 NM_000028 NM_000029 NM_000039 NM_000048 NM_000053 NM_000092 NM_000098 NM_000108 NM_000120 NM_000131 NM_000140 NM_000156 NM_000182 NM_000210 NM_000216 NM_000218 NM_000231 NM_000240 NM_000311 NM_000332 NM_000365 NM_000369 NM_000376 NM_000387 NM_000388 NM_000400 NM_000462 NM_000476 NM_000503 NM_000510 NM_000573 NM_000599 NM_000618 NM_000626 NM_000642 NM_000643 NM_000644 NM_000645 NM_000646 NM_000651 NM_000690 NM_000692 NM_000706 NM_000719 NM_000722 NM_000739 NM_000750 NM_000756 NM_000806 NM_000809 NM_000845 NM_000860 NM_000908 NM_000916 NM_000917 NM_001001323 NM_001001344 NM_001001396 NM_001001437 NM_001001502 NM_001001549 NM_001001550 NM_001001555 NM_001001557 NM_001001662 NM_001001677 NM_001001697 NM_001001707 NM_001001715 NM_001001872 NM_001001890 NM_001001928 NM_001001929 NM_001001930 NM_001001971 NM_001002295 NM_001002836 NM_001002857 NM_001002858 NM_001002860 NM_001002880 NM_001002909 NM_001003712 NM_001003715 NM_001003716 NM_001004297 NM_001004302 NM_001004346 NM_001004360 NM_001004433 NM_001005176 NM_001005242 NM_001005386 NM_001005388 NM_001005473 NM_001005737 NM_001005766 NM_001005852 NM_001005914 NM_001005918 NM_001005920 NM_001006626 NM_001006627 NM_001006628 NM_001006629 NM_001006630 NM_001006631 NM_001006632 NM_001006939 NM_001006946 NM_001007122 NM_001007466 NM_001007533 NM_001007536 NM_001007546 NM_001007595 NM_001007793 NM_001008225 NM_001008388 NM_001008493 NM_001008572 NM_001008660 NM_001008707 NM_001009554 NM_001009932 NM_001009933 NM_001009934 NM_001009991 NM_001010857 NM_001010867 NM_001010984 NM_001011540 NM_001011553 NM_001011708 NM_001012393 NM_001012420 NM_001012426 NM_001012427 NM_001012515 NM_001012651 NM_001012733 NM_001012734 NM_001012755 NM_001012761 NM_001012964 NM_001012965 NM_001012966 NM_001013438 NM_001013639 NM_001013659 NM_001013678 NM_001013695 NM_001013698 NM_001015048 NM_001015049 NM_001015877 NM_001015886 NM_001017368 NM_001017369 NM_001017395 NM_001017535 NM_001017924 NM_001017930 NM_001017962 NM_001017975 NM_001017981 NM_001018058 NM_001018080 NM_001018090 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018097 NM_001018098 NM_001018100 NM_001018101 NM_001018102 NM_001024676 NM_001024688 NM_001024943 NM_001024944 NM_001024946 NM_001024947 NM_001025108 NM_001025109 NM_001025193 NM_001025232 NM_001025266 NM_001041 NM_001080 NM_001114 NM_001175 NM_001183 NM_001194 NM_001259 NM_001271 NM_001303 NM_001312 NM_001326 NM_001349 NM_001361 NM_001419 NM_001420 NM_001421 NM_001422 NM_001432 NM_001448 NM_001483 NM_001495 NM_001539 NM_001563 NM_001608 NM_001609 NM_001616 NM_001624 NM_001668 NM_001682 NM_001684 NM_001717 NM_001722 NM_001730 NM_001731 NM_001748 NM_001754 NM_001759 NM_001766 NM_001773 NM_001780 NM_001788 NM_001800 NM_001842 NM_001858 NM_001864 NM_001893 NM_001895 NM_001902 NM_001911 NM_001918 NM_001931 NM_001949 NM_001951 NM_001981 NM_001988 NM_002012 NM_002016 NM_002017 NM_002024 NM_002025 NM_002048 NM_002051 NM_002092 NM_002136 NM_002152 NM_002192 NM_002254 NM_002271 NM_002285 NM_002286 NM_002290 NM_002353 NM_002357 NM_002415 NM_002485 NM_002509 NM_002517 NM_002545 NM_002569 NM_002577 NM_002713 NM_002730 NM_002732 NM_002737 NM_002748 NM_002774 NM_002820 NM_002823 NM_002844 NM_002874 NM_002903 NM_002911 NM_002997 NM_002998 NM_003003 NM_003011 NM_003016 NM_003022 NM_003023 NM_003036 NM_003043 NM_003064 NM_003074 NM_003085 NM_003088 NM_003107 NM_003142 NM_003150 NM_003161 NM_003181 NM_003200 NM_003234 NM_003247 NM_003266 NM_003283 NM_003320 NM_003326 NM_003382 NM_003415 NM_003439 NM_003479 NM_003483 NM_003545 NM_003567 NM_003580 NM_003590 NM_003597 NM_003617 NM_003631 NM_003657 NM_003677 NM_003722 NM_003754 NM_003774 NM_003812 NM_003815 NM_003874 NM_003879 NM_003899 NM_003916 NM_003927 NM_003945 NM_003971 NM_004039 NM_004055 NM_004079 NM_004091 NM_004202 NM_004220 NM_004233 NM_004236 NM_004311 NM_004320 NM_004327 NM_004367 NM_004426 NM_004432 NM_004434 NM_004437 NM_004442 NM_004455 NM_004473 NM_004479 NM_004480 NM_004495 NM_004513 NM_004572 NM_004586 NM_004593 NM_004612 NM_004636 NM_004646 NM_004649 NM_004674 NM_004681 NM_004709 NM_004725 NM_004730 NM_004745 NM_004759 NM_004764 NM_004773 NM_004796 NM_004849 NM_004863 NM_004869 NM_004873 NM_004894 NM_004898 NM_004902 NM_004910 NM_004932 NM_004936 NM_004951 NM_005014 NM_005026 NM_005029 NM_005036 NM_005044 NM_005065 NM_005102 NM_005103 NM_005109 NM_005116 NM_005138 NM_005146 NM_005167 NM_005187 NM_005195 NM_005208 NM_005238 NM_005266 NM_005311 NM_005320 NM_005336 NM_005339 NM_005378 NM_005382 NM_005391 NM_005400 NM_005463 NM_005467 NM_005477 NM_005481 NM_005494 NM_005505 NM_005529 NM_005542 NM_005543 NM_005560 NM_005578 NM_005639 NM_005665 NM_005692 NM_005704 NM_005722 NM_005730 NM_005752 NM_005783 NM_005786 NM_005822 NM_005823 NM_005826 NM_005845 NM_005875 NM_005883 NM_005902 NM_005904 NM_005933 NM_006015 NM_006017 NM_006034 NM_006037 NM_006045 NM_006059 NM_006078 NM_006092 NM_006095 NM_006107 NM_006116 NM_006125 NM_006139 NM_006166 NM_006191 NM_006206 NM_006218 NM_006243 NM_006275 NM_006276 NM_006282 NM_006291 NM_006293 NM_006335 NM_006364 NM_006375 NM_006420 NM_006439 NM_006454 NM_006460 NM_006534 NM_006542 NM_006546 NM_006547 NM_006563 NM_006565 NM_006570 NM_006599 NM_006603 NM_006618 NM_006661 NM_006710 NM_006730 NM_006742 NM_006745 NM_006772 NM_006788 NM_006803 NM_006805 NM_006850 NM_006880 NM_006895 NM_006924 NM_006978 NM_006984 NM_006999 NM_007011 NM_007046 NM_007050 NM_007106 NM_007115 NM_007126 NM_007129 NM_007166 NM_007190 NM_007249 NM_007250 NM_007254 NM_007294 NM_007295 NM_007296 NM_007297 NM_007298 NM_007299 NM_007300 NM_007301 NM_007302 NM_007303 NM_007304 NM_007305 NM_007306 NM_007321 NM_007353 NM_012081 NM_012083 NM_012115 NM_012121 NM_012138 NM_012218 NM_012225 NM_012252 NM_012258 NM_012259 NM_012262 NM_012263 NM_012309 NM_012315 NM_012406 NM_012443 NM_012456 NM_012458 NM_012471 NM_012482 NM_013230 NM_013261 NM_013275 NM_013281 NM_013286 NM_013322 NM_013341 NM_013374 NM_013379 NM_013384 NM_013404 NM_013422 NM_013450 NM_014016 NM_014035 NM_014106 NM_014110 NM_014112 NM_014138 NM_014141 NM_014142 NM_014172 NM_014242 NM_014246 NM_014313 NM_014321 NM_014339 NM_014361 NM_014403 NM_014405 NM_014432 NM_014445 NM_014451 NM_014456 NM_014468 NM_014521 NM_014587 NM_014615 NM_014646 NM_014647 NM_014648 NM_014656 NM_014667 NM_014674 NM_014713 NM_014736 NM_014739 NM_014746 NM_014751 NM_014771 NM_014776 NM_014788 NM_014803 NM_014809 NM_014812 NM_014834 NM_014867 NM_014885 NM_014923 NM_014932 NM_014935 NM_014937 NM_014940 NM_014997 NM_015002 NM_015008 NM_015022 NM_015035 NM_015064 NM_015066 NM_015074 NM_015090 NM_015113 NM_015155 NM_015160 NM_015166 NM_015176 NM_015198 NM_015206 NM_015210 NM_015215 NM_015245 NM_015265 NM_015267 NM_015288 NM_015314 NM_015318 NM_015339 NM_015359 NM_015373 NM_015484 NM_015509 NM_015530 NM_015532 NM_015541 NM_015558 NM_015569 NM_015604 NM_015649 NM_015659 NM_015683 NM_015685 NM_015944 NM_015950 NM_015957 NM_015983 NM_016018 NM_016080 NM_016108 NM_016118 NM_016131 NM_016196 NM_016239 NM_016258 NM_016260 NM_016322 NM_016337 NM_016390 NM_016424 NM_016436 NM_016485 NM_016525 NM_016536 NM_016538 NM_016570 NM_016586 NM_016593 NM_016605 NM_016614 NM_016932 NM_017437 NM_017449 NM_017450 NM_017577 NM_017582 NM_017583 NM_017588 NM_017662 NM_017723 NM_017742 NM_017787 NM_017824 NM_017832 NM_017860 NM_017876 NM_017894 NM_017915 NM_017927 NM_017928 NM_017953 NM_018032 NM_018073 NM_018078 NM_018099 NM_018149 NM_018181 NM_018182 NM_018199 NM_018212 NM_018215 NM_018224 NM_018227 NM_018246 NM_018252 NM_018264 NM_018360 NM_018382 NM_018409 NM_018423 NM_018427 NM_018440 NM_018450 NM_018566 NM_018658 NM_018663 NM_018667 NM_018683 NM_018685 NM_018693 NM_018696 NM_018697 NM_018713 NM_018715 NM_018718 NM_018837 NM_018941 NM_018942 NM_018945 NM_018962 NM_018976 NM_018984 NM_019034 NM_019040 NM_019042 NM_019043 NM_019070 NM_019081 NM_019092 NM_019094 NM_019556 NM_019616 NM_019891 NM_020119 NM_020144 NM_020167 NM_020184 NM_020225 NM_020238 NM_020245 NM_020307 NM_020359 NM_020372 NM_020405 NM_020407 NM_020409 NM_020456 NM_020482 NM_020546 NM_020552 NM_020553 NM_020644 NM_020657 NM_020714 NM_020766 NM_020774 NM_020802 NM_020824 NM_020841 NM_020844 NM_020845 NM_020851 NM_020856 NM_020858 NM_020861 NM_020868 NM_020903 NM_020918 NM_020925 NM_020940 NM_021006 NM_021020 NM_021230 NM_021258 NM_021574 NM_021602 NM_021798 NM_021813 NM_021815 NM_021940 NM_021949 NM_022075 NM_022096 NM_022153 NM_022163 NM_022337 NM_022473 NM_022482 NM_022484 NM_022493 NM_022574 NM_022771 NM_022818 NM_022833 NM_022842 NM_022899 NM_022900 NM_023028 NM_023937 NM_024015 NM_024026 NM_024039 NM_024051 NM_024052 NM_024080 NM_024086 NM_024303 NM_024309 NM_024336 NM_024408 NM_024546 NM_024595 NM_024607 NM_024633 NM_024670 NM_024676 NM_024730 NM_024761 NM_024830 NM_024834 NM_024869 NM_024873 NM_024881 NM_024922 NM_024942 NM_024949 NM_025042 NM_025057 NM_025059 NM_025090 NM_025147 NM_025154 NM_025160 NM_025195 NM_025214 NM_030569 NM_030621 NM_030651 NM_030661 NM_030665 NM_030781 NM_030787 NM_030799 NM_030806 NM_030813 NM_030978 NM_031157 NM_031216 NM_031372 NM_031409 NM_031453 NM_031459 NM_031461 NM_031473 NM_031911 NM_031943 NM_032039 NM_032109 NM_032144 NM_032175 NM_032228 NM_032261 NM_032264 NM_032281 NM_032285 NM_032295 NM_032314 NM_032325 NM_032329 NM_032344 NM_032361 NM_032432 NM_032449 NM_032458 NM_032477 NM_032498 NM_032511 NM_032525 NM_032573 NM_032621 NM_032632 NM_032638 NM_032648 NM_032679 NM_032710 NM_032781 NM_032789 NM_032801 NM_032817 NM_032823 NM_032825 NM_032826 NM_032838 NM_032848 NM_032853 NM_032866 NM_032932 NM_032960 NM_033052 NM_033090 NM_033103 NM_033131 NM_033206 NM_033211 NM_033221 NM_033224 NM_033288 NM_033312 NM_033316 NM_033318 NM_033331 NM_033393 NM_033394 NM_033425 NM_033439 NM_033446 NM_033624 NM_052818 NM_052821 NM_052832 NM_052847 NM_052863 NM_052864 NM_052876 NM_052879 NM_052884 NM_052896 NM_052898 NM_053045 NM_053277 NM_053284 NM_054026 NM_057169 NM_057170 NM_057178 NM_058175 NM_058183 NM_078487 NM_079421 NM_080391 NM_080392 NM_080489 NM_080546 NM_080605 NM_080647 NM_080656 NM_080659 NM_080860 NM_080927 NM_080928 NM_130838 NM_130839 NM_130898 NM_133170 NM_133177 NM_133178 NM_133334 NM_133445 NM_133451 NM_133625 NM_133646 NM_138287 NM_138369 NM_138457 NM_138554 NM_138556 NM_138558 NM_138567 NM_138704 NM_138713 NM_138714 NM_138809 NM_138925 NM_138926 NM_138927 NM_138969 NM_138970 NM_139018 NM_139062 NM_139126 NM_139135 NM_139159 NM_139202 NM_139276 NM_144599 NM_144621 NM_144984 NM_144988 NM_145001 NM_145037 NM_145044 NM_145057 NM_145061 NM_145111 NM_145166 NM_145187 NM_145188 NM_145189 NM_145190 NM_145231 NM_145234 NM_145257 NM_145259 NM_145260 NM_145276 NM_145278 NM_145284 NM_145326 NM_145341 NM_145646 NM_145796 NM_145891 NM_145892 NM_145893 NM_147129 NM_147164 NM_147180 NM_147189 NM_152272 NM_152275 NM_152307 NM_152317 NM_152339 NM_152367 NM_152387 NM_152407 NM_152556 NM_152571 NM_152594 NM_152621 NM_152624 NM_152641 NM_152701 NM_152728 NM_152744 NM_152751 NM_152758 NM_152774 NM_152924 NM_152943 NM_153020 NM_153025 NM_153029 NM_153038 NM_153041 NM_153358 NM_153367 NM_153371 NM_153447 NM_153486 NM_153616 NM_153617 NM_153618 NM_153619 NM_153631 NM_153632 NM_153683 NM_153686 NM_153701 NM_153710 NM_153712 NM_153742 NM_170610 NM_170740 NM_170741 NM_170742 NM_170743 NM_171982 NM_171999 NM_172020 NM_172058 NM_172059 NM_172060 NM_172217 NM_172239 NM_172242 NM_172364 NM_173064 NM_173065 NM_173075 NM_173201 NM_173214 NM_173510 NM_173547 NM_173581 NM_173588 NM_173618 NM_173621 NM_173622 NM_173651 NM_173669 NM_173670 NM_173793 NM_173817 NM_173823 NM_173854 NM_175039 NM_175040 NM_175566 NM_175745 NM_175895 NM_175931 NM_176677 NM_176820 NM_177438 NM_177549 NM_177559 NM_177560 NM_177972 NM_177988 NM_178012 NM_178033 NM_178037 NM_178038 NM_178039 NM_178040 NM_178140 NM_178154 NM_178155 NM_178156 NM_178157 NM_178423 NM_178426 NM_178427 NM_178470 NM_178507 NM_178514 NM_178562 NM_178564 NM_178812 NM_178819 NM_181078 NM_181079 NM_181339 NM_181340 NM_181341 NM_181442 NM_181489 NM_181659 NM_181703 NM_181746 NM_181787 NM_181797 NM_181798 NM_182314 NM_182531 NM_182558 NM_182562 NM_182568 NM_182616 NM_182691 NM_182692 NM_182760 NM_182775 NM_182832 NM_182848 NM_182935 NM_183075 NM_183079 NM_184234 NM_184237 NM_184241 NM_184244 NM_194278 NM_194285 NM_194298 NM_194314 NM_194317 NM_194352 NM_194436 NM_194460 NM_197956 NM_198076 NM_198081 NM_198152 NM_198155 NM_198189 NM_198215 NM_198270 NM_198315 NM_198330 NM_198336 NM_198337 NM_198381 NM_198391 NM_198428 NM_198441 NM_198484 NM_198503 NM_198553 NM_198596 NM_198798 NM_198893 NM_198935 NM_198964 NM_199000 NM_199040 NM_199050 NM_199072 NM_199131 NM_199168 NM_199188 NM_199190 NM_201412 NM_201628 NM_203327 NM_203342 NM_203343 NM_203346 NM_203349 NM_203395 NM_203463 NM_203472 NM_205864 NM_206855 NM_207113 NM_207170 NM_207191 NM_207194 NM_207195 NM_207196 NM_207197 NM_207318 NM_207322 NM_207357 NM_207368 NM_207400 NM_207429 NM_207454 NM_207468 NM_207470 NM_207500 NM_207514 NM_207518 NM_213566 NM_213662 NM_213723 XM_032571 XM_042301 XM_042833 XM_043493 XM_046581 XM_047550 XM_047554 XM_049952 XM_059482 XM_068632 XM_085831 XM_085833 XM_098117 XM_117451 XM_166320 XM_171154 XM_211287 XM_212061 XM_290345 XM_290401 XM_290597 XM_291028 XM_291063 XM_291095 XM_291128 XM_350880 XM_370665 XM_370756 XM_370838 XM_370843 XM_371097 XM_371177 XM_371369 XM_371374 XM_371647 XM_371655 XM_371759 XM_371760 XM_371848 XM_372050 XM_372267 XM_373444 XM_374270 XM_374289 XM_374983 XM_375007 XM_375357 XM_375373 XM_375456 XM_375527 XM_375606 XM_375629 XM_375697 XM_375816 XM_375928 XM_375929 XM_376062 XM_376254 XM_376350 XM_376727 XM_376784 XM_378178 XM_378247 XM_378259 XM_378356 XM_378421 XM_378456 XM_378460 XM_378473 XM_378573 XM_378730 XM_378777 XM_378825 XM_378876 XM_378946 XM_378957 XM_379068 XM_379074 XM_379075 XM_379145 XM_379156 XM_379309 XM_379432 XM_379452 XM_379458 XM_379530 XM_379582 XM_379632 XM_379656 XM_379702 XM_379853 XM_379877 XM_379979 XM_380151 XM_380154 XM_495795 XM_495844 XM_495877 XM_495902 XM_496050 XM_496056 XM_496216 XM_496351 XM_496391 XM_496394 XM_496436 XM_496467 XM_496536 XM_496705 XM_496889 XM_496895 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_497080 XM_498427 XM_498436 XM_498473 XM_498567 XM_498587 XM_498593 XM_498594 XM_498596 XM_498611 XM_498614 XM_498649 XM_498684 XM_498687 XM_498824 XM_498852 XM_498901 XM_498957 XM_498986 XM_499056 XM_499063 XM_499084 XM_499153 XM_499154 XM_499312 XM_499323 XM_499392 XM_499503 XM_499512 XM_499539 XM_499566 XM_499602
Genes with multiple seed matches:
NM_000053 NM_000573 NM_000651 NM_001001549 NM_001001550 NM_001001555 NM_001001707 NM_001002909 NM_001005918 NM_001008493 NM_001011540 NM_001012426 NM_001012427 NM_001018058 NM_001432 NM_001911 NM_002025 NM_002577 NM_003043 NM_003107 NM_003200 NM_003479 NM_004898 NM_004936 NM_005311 NM_006095 NM_006460 NM_006534 NM_006546 NM_006547 NM_012121 NM_012252 NM_012458 NM_014112 NM_014739 NM_014932 NM_015215 NM_015265 NM_015530 NM_015683 NM_016436 NM_018212 NM_018215 NM_018667 NM_018941 NM_020119 NM_020844 NM_020856 NM_021798 NM_024607 NM_024873 NM_030661 NM_030799 NM_031216 NM_032264 NM_033446 NM_052847 NM_078487 NM_138457 NM_139159 NM_153631 NM_153632 NM_153712 NM_181078 NM_181079 NM_181659 NM_182760 NM_182832 NM_194285 NM_194460 NM_198076 NM_198152 NM_198270 NM_198503 NM_199131 NM_201628 NM_203395 NM_207500 XM_291028 XM_370838 XM_373444 XM_376350 XM_376727 XM_379432 XM_379979
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)