VIRsiRNAdb

Predicted off-targets seeds for siRNA "aucuuaggauugccuacgc" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :802.
Total Genes with multiple seed matches: 38.
Genes with at least one seed match: NM_000043 NM_000068 NM_000140 NM_000176 NM_000248 NM_000447 NM_000449 NM_000486 NM_000498 NM_000553 NM_000581 NM_000655 NM_000664 NM_000674 NM_000721 NM_000742 NM_000791 NM_000793 NM_000838 NM_000861 NM_000868 NM_000885 NM_000998 NM_001001394 NM_001001419 NM_001001420 NM_001001669 NM_001001677 NM_001001685 NM_001001694 NM_001001695 NM_001001706 NM_001001870 NM_001001974 NM_001002006 NM_001002924 NM_001003407 NM_001003408 NM_001003789 NM_001003794 NM_001004055 NM_001004302 NM_001004322 NM_001004720 NM_001004722 NM_001005473 NM_001006667 NM_001007023 NM_001007156 NM_001007246 NM_001008392 NM_001008404 NM_001008408 NM_001008726 NM_001009992 NM_001010911 NM_001011545 NM_001011667 NM_001011669 NM_001011670 NM_001012320 NM_001012509 NM_001012515 NM_001012651 NM_001012733 NM_001012734 NM_001012750 NM_001012751 NM_001012752 NM_001012753 NM_001012755 NM_001013664 NM_001013687 NM_001013693 NM_001013694 NM_001013695 NM_001013724 NM_001013727 NM_001013748 NM_001013836 NM_001013837 NM_001014440 NM_001014796 NM_001014797 NM_001017395 NM_001017396 NM_001017408 NM_001017921 NM_001017972 NM_001017989 NM_001018074 NM_001018075 NM_001018076 NM_001018077 NM_001020825 NM_001023563 NM_001023565 NM_001024094 NM_001024608 NM_001024631 NM_001024667 NM_001024843 NM_001024858 NM_001025076 NM_001025077 NM_001025233 NM_001025266 NM_001044 NM_001050 NM_001127 NM_001264 NM_001275 NM_001284 NM_001286 NM_001294 NM_001392 NM_001408 NM_001449 NM_001537 NM_001538 NM_001652 NM_001757 NM_001759 NM_001761 NM_001831 NM_001860 NM_001949 NM_002006 NM_002025 NM_002081 NM_002108 NM_002111 NM_002119 NM_002125 NM_002211 NM_002214 NM_002226 NM_002242 NM_002313 NM_002340 NM_002395 NM_002558 NM_002613 NM_002619 NM_002634 NM_002705 NM_002711 NM_002722 NM_002725 NM_002745 NM_002814 NM_002833 NM_002840 NM_002868 NM_002883 NM_002945 NM_002993 NM_003123 NM_003149 NM_003153 NM_003156 NM_003173 NM_003202 NM_003205 NM_003216 NM_003217 NM_003282 NM_003528 NM_003550 NM_003573 NM_003576 NM_003581 NM_003644 NM_003683 NM_003774 NM_003808 NM_003879 NM_003926 NM_003939 NM_003959 NM_003965 NM_003979 NM_004108 NM_004117 NM_004148 NM_004171 NM_004227 NM_004233 NM_004293 NM_004341 NM_004398 NM_004429 NM_004496 NM_004514 NM_004518 NM_004554 NM_004571 NM_004580 NM_004602 NM_004624 NM_004715 NM_004727 NM_004795 NM_004977 NM_004992 NM_004993 NM_005018 NM_005093 NM_005135 NM_005157 NM_005173 NM_005188 NM_005189 NM_005194 NM_005202 NM_005316 NM_005358 NM_005437 NM_005455 NM_005458 NM_005470 NM_005530 NM_005539 NM_005634 NM_005635 NM_005741 NM_005808 NM_005828 NM_005858 NM_005873 NM_005879 NM_005903 NM_005920 NM_005938 NM_005941 NM_005986 NM_006077 NM_006091 NM_006132 NM_006134 NM_006182 NM_006212 NM_006238 NM_006286 NM_006293 NM_006315 NM_006359 NM_006389 NM_006413 NM_006438 NM_006452 NM_006481 NM_006510 NM_006538 NM_006549 NM_006561 NM_006598 NM_006720 NM_006722 NM_006752 NM_006784 NM_006842 NM_006868 NM_006889 NM_006890 NM_006959 NM_006989 NM_007011 NM_007077 NM_007081 NM_007107 NM_007146 NM_007283 NM_007313 NM_009588 NM_012075 NM_012101 NM_012121 NM_012156 NM_012163 NM_012296 NM_012300 NM_012384 NM_012388 NM_012398 NM_012420 NM_012425 NM_012486 NM_013286 NM_013304 NM_013375 NM_013385 NM_013412 NM_013443 NM_013450 NM_013989 NM_014048 NM_014235 NM_014333 NM_014388 NM_014480 NM_014499 NM_014571 NM_014591 NM_014601 NM_014616 NM_014665 NM_014683 NM_014700 NM_014726 NM_014747 NM_014751 NM_014755 NM_014798 NM_014838 NM_014905 NM_014953 NM_015008 NM_015051 NM_015088 NM_015094 NM_015113 NM_015155 NM_015187 NM_015194 NM_015198 NM_015229 NM_015234 NM_015253 NM_015257 NM_015272 NM_015347 NM_015446 NM_015455 NM_015831 NM_015837 NM_015949 NM_015995 NM_016019 NM_016020 NM_016250 NM_016356 NM_016542 NM_016647 NM_017418 NM_017437 NM_017444 NM_017452 NM_017453 NM_017454 NM_017518 NM_017555 NM_017582 NM_017594 NM_017617 NM_017637 NM_017732 NM_017869 NM_017974 NM_018038 NM_018069 NM_018089 NM_018246 NM_018247 NM_018254 NM_018310 NM_018323 NM_018362 NM_018443 NM_018641 NM_018836 NM_018957 NM_019027 NM_019046 NM_019069 NM_019846 NM_020116 NM_020119 NM_020122 NM_020127 NM_020142 NM_020148 NM_020168 NM_020193 NM_020208 NM_020223 NM_020231 NM_020313 NM_020357 NM_020362 NM_020384 NM_020399 NM_020425 NM_020439 NM_020443 NM_020462 NM_020526 NM_020631 NM_020699 NM_020713 NM_020761 NM_020773 NM_020774 NM_020804 NM_020814 NM_020879 NM_020962 NM_020988 NM_021020 NM_021036 NM_021079 NM_021088 NM_021101 NM_021168 NM_021622 NM_021735 NM_021736 NM_021737 NM_021826 NM_022003 NM_022166 NM_022405 NM_022492 NM_022568 NM_022764 NM_022837 NM_022842 NM_023032 NM_023930 NM_024095 NM_024109 NM_024408 NM_024590 NM_024608 NM_024612 NM_024636 NM_024649 NM_024670 NM_024736 NM_024780 NM_024940 NM_025106 NM_025179 NM_025217 NM_030643 NM_030655 NM_030660 NM_030767 NM_030803 NM_030927 NM_030950 NM_030958 NM_031211 NM_031265 NM_031268 NM_031282 NM_031417 NM_031439 NM_031453 NM_031463 NM_031469 NM_031866 NM_031913 NM_032109 NM_032160 NM_032227 NM_032329 NM_032366 NM_032385 NM_032464 NM_032493 NM_032501 NM_032515 NM_032646 NM_032680 NM_032714 NM_032780 NM_032797 NM_032840 NM_032869 NM_032871 NM_032895 NM_032906 NM_032932 NM_032994 NM_032995 NM_032998 NM_033082 NM_033211 NM_033224 NM_033253 NM_033449 NM_033626 NM_033637 NM_033644 NM_033645 NM_048368 NM_052831 NM_052869 NM_052878 NM_052939 NM_052996 NM_053045 NM_053056 NM_053286 NM_057177 NM_078471 NM_079837 NM_080491 NM_080542 NM_080551 NM_080627 NM_080666 NM_080832 NM_080836 NM_130387 NM_130440 NM_133463 NM_138288 NM_138413 NM_138445 NM_138447 NM_138467 NM_138567 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_139021 NM_139275 NM_144575 NM_144641 NM_144679 NM_144684 NM_145042 NM_145061 NM_145159 NM_145177 NM_145298 NM_145660 NM_145730 NM_147180 NM_148171 NM_152222 NM_152274 NM_152302 NM_152305 NM_152454 NM_152547 NM_152550 NM_152624 NM_152686 NM_152704 NM_152724 NM_152753 NM_152831 NM_152840 NM_152870 NM_152871 NM_152872 NM_152873 NM_152874 NM_152875 NM_152876 NM_152877 NM_152924 NM_152939 NM_153204 NM_153320 NM_153342 NM_153450 NM_153486 NM_153499 NM_153500 NM_153683 NM_153688 NM_170711 NM_170716 NM_170717 NM_170750 NM_170771 NM_170773 NM_171998 NM_172087 NM_172088 NM_172089 NM_172216 NM_172226 NM_172366 NM_172367 NM_173191 NM_173192 NM_173193 NM_173194 NM_173195 NM_173342 NM_173476 NM_173483 NM_173561 NM_173588 NM_173610 NM_173621 NM_173625 NM_173632 NM_173676 NM_173795 NM_173797 NM_173798 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958 NM_174961 NM_174976 NM_175709 NM_175736 NM_175862 NM_175864 NM_177550 NM_177996 NM_178470 NM_178547 NM_178563 NM_181430 NM_181431 NM_181489 NM_181491 NM_181862 NM_181863 NM_182517 NM_182531 NM_182533 NM_182740 NM_182760 NM_183234 NM_183235 NM_183236 NM_183372 NM_183425 NM_194286 NM_194313 NM_194436 NM_198154 NM_198158 NM_198159 NM_198177 NM_198178 NM_198253 NM_198254 NM_198333 NM_198452 NM_198582 NM_198681 NM_198835 NM_198890 NM_198900 NM_198947 NM_198990 NM_199071 NM_199138 NM_199358 NM_201263 NM_201348 NM_201397 NM_201432 NM_201433 NM_201535 NM_201536 NM_201537 NM_201538 NM_201539 NM_201540 NM_201541 NM_201632 NM_201634 NM_203306 NM_203318 NM_203339 NM_203348 NM_203445 NM_206835 NM_206887 NM_207003 NM_207036 NM_207037 NM_207038 NM_207040 NM_207106 NM_207107 NM_207340 NM_207387 NM_207394 NM_207432 NM_207440 NM_207458 NM_207460 NM_207478 NM_207483 NM_207500 NM_212464 NM_212467 NM_213648 NM_213723 XM_028217 XM_032996 XM_039515 XM_046581 XM_058628 XM_059689 XM_085347 XM_093839 XM_166571 XM_211871 XM_212170 XM_294521 XM_298151 XM_350880 XM_370603 XM_371474 XM_371486 XM_371488 XM_371891 XM_372118 XM_372193 XM_373704 XM_374141 XM_374226 XM_374296 XM_374422 XM_374432 XM_374741 XM_374915 XM_375443 XM_375449 XM_375568 XM_375602 XM_376269 XM_376305 XM_376558 XM_376567 XM_376602 XM_377002 XM_378203 XM_378309 XM_378321 XM_378355 XM_378389 XM_378399 XM_378456 XM_378546 XM_378550 XM_378973 XM_379065 XM_379114 XM_379267 XM_379275 XM_379322 XM_379371 XM_379402 XM_379456 XM_379510 XM_379520 XM_379534 XM_379597 XM_379774 XM_379820 XM_380131 XM_380146 XM_380159 XM_495902 XM_496299 XM_496608 XM_496637 XM_496798 XM_496889 XM_497092 XM_498445 XM_498464 XM_498589 XM_498614 XM_498646 XM_498688 XM_498705 XM_498729 XM_498899 XM_499051 XM_499055 XM_499142 XM_499312 XM_499500 XM_499575 XM_499594 XM_499602 XR_000167 XR_000190 XR_000195 XR_000259	Genes with multiple seed matches: NM_001004302 NM_001008392 NM_001831 NM_003926 NM_004602 NM_005808 NM_006598 NM_012121 NM_013450 NM_017452 NM_017453 NM_017454 NM_018069 NM_021101 NM_023032 NM_031282 NM_032797 NM_033211 NM_080836 NM_138288 NM_138447 NM_139021 NM_144679 NM_153320 NM_173588 NM_173621 NM_173795 NM_182740 NM_198681 NM_201397 NM_203339 NM_203445 NM_206835 NM_212467 XM_379402 XM_379456 XM_499051 XR_000190

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA