VIRsiRNAdb

Predicted off-targets seeds for siRNA "cacugauuccguucgagauc" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1443.
Total Genes with multiple seed matches: 109.
Genes with at least one seed match: NM_000136 NM_000139 NM_000148 NM_000160 NM_000227 NM_000230 NM_000246 NM_000268 NM_000320 NM_000330 NM_000332 NM_000346 NM_000347 NM_000349 NM_000388 NM_000415 NM_000435 NM_000500 NM_000527 NM_000530 NM_000542 NM_000565 NM_000574 NM_000581 NM_000628 NM_000629 NM_000657 NM_000664 NM_000671 NM_000746 NM_000821 NM_000831 NM_000833 NM_000842 NM_000843 NM_000849 NM_000891 NM_000896 NM_000934 NM_000952 NM_000961 NM_000962 NM_000997 NM_001001349 NM_001001419 NM_001001420 NM_001001433 NM_001001434 NM_001001502 NM_001001549 NM_001001550 NM_001001555 NM_001001561 NM_001001690 NM_001001789 NM_001001851 NM_001001938 NM_001002026 NM_001002034 NM_001003399 NM_001003652 NM_001003674 NM_001003675 NM_001003689 NM_001003807 NM_001003811 NM_001003941 NM_001004328 NM_001004332 NM_001004336 NM_001004339 NM_001004352 NM_001004354 NM_001004419 NM_001004420 NM_001005303 NM_001005407 NM_001005473 NM_001005502 NM_001006116 NM_001007024 NM_001007025 NM_001007243 NM_001007254 NM_001007525 NM_001007529 NM_001007545 NM_001007793 NM_001008234 NM_001008239 NM_001008493 NM_001008539 NM_001008564 NM_001008658 NM_001009186 NM_001009571 NM_001009880 NM_001009956 NM_001009960 NM_001010853 NM_001010883 NM_001010909 NM_001010974 NM_001011664 NM_001012274 NM_001012333 NM_001012334 NM_001012339 NM_001012393 NM_001012508 NM_001012651 NM_001012706 NM_001012732 NM_001012733 NM_001012986 NM_001012988 NM_001013404 NM_001013649 NM_001013651 NM_001013667 NM_001013671 NM_001013673 NM_001013693 NM_001013719 NM_001013720 NM_001013738 NM_001013739 NM_001013839 NM_001014283 NM_001014342 NM_001014445 NM_001014765 NM_001014812 NM_001015045 NM_001017980 NM_001017987 NM_001017995 NM_001018061 NM_001018062 NM_001018067 NM_001018068 NM_001018069 NM_001018084 NM_001018116 NM_001020658 NM_001024215 NM_001024380 NM_001024381 NM_001024401 NM_001024460 NM_001024603 NM_001024608 NM_001024843 NM_001024858 NM_001024947 NM_001025076 NM_001025077 NM_001025158 NM_001025159 NM_001025202 NM_001065 NM_001066 NM_001092 NM_001157 NM_001167 NM_001187 NM_001197 NM_001204 NM_001218 NM_001226 NM_001270 NM_001271 NM_001277 NM_001291 NM_001296 NM_001310 NM_001414 NM_001421 NM_001423 NM_001448 NM_001461 NM_001490 NM_001512 NM_001557 NM_001562 NM_001616 NM_001630 NM_001632 NM_001638 NM_001646 NM_001695 NM_001716 NM_001730 NM_001732 NM_001762 NM_001848 NM_001874 NM_001903 NM_001908 NM_001918 NM_001921 NM_001928 NM_001939 NM_001968 NM_001992 NM_002033 NM_002061 NM_002080 NM_002086 NM_002096 NM_002098 NM_002101 NM_002128 NM_002163 NM_002199 NM_002351 NM_002388 NM_002391 NM_002416 NM_002425 NM_002439 NM_002545 NM_002546 NM_002577 NM_002579 NM_002634 NM_002676 NM_002695 NM_002711 NM_002716 NM_002719 NM_002725 NM_002738 NM_002833 NM_002840 NM_002875 NM_002886 NM_002912 NM_002928 NM_002933 NM_002985 NM_003004 NM_003023 NM_003033 NM_003035 NM_003036 NM_003042 NM_003046 NM_003074 NM_003082 NM_003085 NM_003094 NM_003106 NM_003200 NM_003202 NM_003320 NM_003399 NM_003430 NM_003458 NM_003462 NM_003480 NM_003565 NM_003597 NM_003598 NM_003617 NM_003624 NM_003661 NM_003685 NM_003740 NM_003763 NM_003774 NM_003807 NM_003810 NM_003874 NM_003897 NM_003929 NM_003950 NM_003970 NM_003979 NM_004040 NM_004060 NM_004070 NM_004079 NM_004094 NM_004277 NM_004331 NM_004337 NM_004338 NM_004355 NM_004367 NM_004376 NM_004379 NM_004397 NM_004399 NM_004401 NM_004414 NM_004442 NM_004488 NM_004537 NM_004555 NM_004565 NM_004610 NM_004617 NM_004646 NM_004697 NM_004711 NM_004725 NM_004744 NM_004762 NM_004763 NM_004772 NM_004798 NM_004804 NM_004808 NM_004861 NM_004863 NM_004869 NM_004871 NM_004929 NM_004937 NM_004948 NM_004992 NM_005044 NM_005128 NM_005137 NM_005167 NM_005187 NM_005197 NM_005206 NM_005207 NM_005216 NM_005242 NM_005311 NM_005347 NM_005417 NM_005418 NM_005431 NM_005446 NM_005488 NM_005506 NM_005524 NM_005565 NM_005599 NM_005647 NM_005687 NM_005707 NM_005737 NM_005766 NM_005793 NM_005816 NM_005870 NM_005897 NM_005901 NM_005903 NM_005920 NM_005935 NM_005975 NM_005978 NM_005986 NM_005989 NM_005999 NM_006011 NM_006054 NM_006094 NM_006132 NM_006139 NM_006142 NM_006166 NM_006167 NM_006176 NM_006177 NM_006195 NM_006213 NM_006224 NM_006226 NM_006237 NM_006241 NM_006278 NM_006312 NM_006319 NM_006321 NM_006353 NM_006354 NM_006438 NM_006449 NM_006455 NM_006464 NM_006496 NM_006505 NM_006508 NM_006538 NM_006561 NM_006587 NM_006670 NM_006780 NM_006814 NM_006955 NM_006969 NM_007008 NM_007047 NM_007050 NM_007063 NM_007107 NM_007144 NM_007175 NM_007211 NM_007249 NM_007270 NM_007306 NM_007354 NM_007375 NM_009586 NM_012076 NM_012080 NM_012098 NM_012218 NM_012261 NM_012271 NM_012287 NM_012288 NM_012290 NM_012317 NM_012425 NM_012431 NM_012479 NM_013257 NM_013261 NM_013269 NM_013322 NM_013332 NM_013345 NM_013363 NM_013432 NM_013439 NM_014001 NM_014033 NM_014057 NM_014089 NM_014223 NM_014240 NM_014268 NM_014292 NM_014293 NM_014321 NM_014339 NM_014426 NM_014442 NM_014453 NM_014456 NM_014484 NM_014507 NM_014509 NM_014554 NM_014556 NM_014676 NM_014725 NM_014736 NM_014741 NM_014742 NM_014753 NM_014755 NM_014766 NM_014809 NM_014853 NM_014867 NM_014883 NM_014897 NM_014898 NM_014899 NM_014905 NM_014909 NM_014919 NM_014924 NM_014945 NM_014948 NM_014953 NM_014988 NM_014994 NM_015015 NM_015064 NM_015074 NM_015084 NM_015088 NM_015092 NM_015113 NM_015122 NM_015125 NM_015144 NM_015151 NM_015158 NM_015173 NM_015192 NM_015205 NM_015210 NM_015219 NM_015229 NM_015245 NM_015253 NM_015264 NM_015266 NM_015286 NM_015318 NM_015328 NM_015329 NM_015332 NM_015347 NM_015350 NM_015352 NM_015375 NM_015393 NM_015396 NM_015409 NM_015444 NM_015453 NM_015455 NM_015458 NM_015481 NM_015506 NM_015550 NM_015621 NM_015629 NM_015633 NM_015640 NM_015659 NM_015666 NM_015675 NM_015855 NM_015949 NM_015981 NM_015989 NM_016052 NM_016083 NM_016147 NM_016169 NM_016175 NM_016226 NM_016255 NM_016261 NM_016322 NM_016339 NM_016359 NM_016369 NM_016382 NM_016418 NM_016422 NM_016426 NM_016433 NM_016436 NM_016482 NM_016518 NM_016520 NM_016562 NM_016592 NM_016643 NM_016735 NM_016815 NM_016823 NM_017424 NM_017444 NM_017449 NM_017456 NM_017523 NM_017594 NM_017595 NM_017607 NM_017614 NM_017628 NM_017656 NM_017709 NM_017736 NM_017740 NM_017744 NM_017748 NM_017765 NM_017769 NM_017773 NM_017801 NM_017821 NM_017830 NM_017843 NM_017919 NM_017929 NM_017946 NM_017954 NM_017966 NM_017968 NM_018000 NM_018032 NM_018046 NM_018068 NM_018076 NM_018086 NM_018096 NM_018121 NM_018141 NM_018177 NM_018185 NM_018209 NM_018212 NM_018233 NM_018245 NM_018267 NM_018269 NM_018287 NM_018292 NM_018303 NM_018304 NM_018323 NM_018324 NM_018344 NM_018347 NM_018381 NM_018399 NM_018412 NM_018438 NM_018439 NM_018454 NM_018557 NM_018639 NM_018656 NM_018674 NM_018708 NM_018712 NM_018717 NM_018728 NM_018846 NM_018941 NM_018962 NM_018992 NM_019001 NM_019034 NM_019046 NM_019062 NM_019089 NM_019099 NM_019119 NM_019857 NM_020230 NM_020237 NM_020239 NM_020337 NM_020338 NM_020429 NM_020443 NM_020448 NM_020456 NM_020532 NM_020699 NM_020704 NM_020708 NM_020713 NM_020714 NM_020738 NM_020782 NM_020820 NM_020825 NM_020839 NM_020844 NM_020895 NM_020914 NM_020917 NM_020933 NM_020954 NM_020956 NM_020967 NM_020975 NM_021036 NM_021098 NM_021131 NM_021153 NM_021155 NM_021167 NM_021572 NM_021629 NM_021645 NM_021652 NM_021812 NM_021814 NM_021817 NM_021927 NM_021962 NM_021979 NM_022041 NM_022067 NM_022107 NM_022112 NM_022153 NM_022334 NM_022349 NM_022350 NM_022361 NM_022371 NM_022470 NM_022497 NM_022549 NM_022552 NM_022568 NM_022571 NM_022572 NM_022756 NM_022758 NM_022761 NM_022777 NM_022831 NM_022842 NM_022895 NM_022912 NM_022973 NM_022974 NM_023076 NM_023928 NM_023930 NM_023931 NM_024022 NM_024026 NM_024038 NM_024067 NM_024081 NM_024103 NM_024116 NM_024294 NM_024297 NM_024301 NM_024311 NM_024345 NM_024416 NM_024421 NM_024507 NM_024512 NM_024541 NM_024561 NM_024607 NM_024627 NM_024645 NM_024646 NM_024647 NM_024676 NM_024677 NM_024693 NM_024705 NM_024719 NM_024733 NM_024750 NM_024756 NM_024761 NM_024774 NM_024798 NM_024804 NM_024874 NM_024876 NM_024881 NM_024902 NM_024909 NM_024910 NM_024930 NM_024941 NM_024955 NM_025049 NM_025059 NM_025061 NM_025090 NM_025104 NM_025197 NM_025230 NM_025245 NM_030626 NM_030653 NM_030655 NM_030670 NM_030671 NM_030772 NM_030776 NM_030799 NM_030806 NM_030915 NM_030919 NM_030929 NM_030980 NM_031216 NM_031227 NM_031228 NM_031276 NM_031295 NM_031310 NM_031409 NM_031461 NM_031465 NM_031476 NM_031866 NM_031886 NM_031900 NM_031904 NM_031940 NM_032012 NM_032017 NM_032121 NM_032179 NM_032189 NM_032208 NM_032213 NM_032231 NM_032262 NM_032267 NM_032285 NM_032296 NM_032307 NM_032325 NM_032374 NM_032382 NM_032401 NM_032404 NM_032432 NM_032433 NM_032451 NM_032493 NM_032599 NM_032608 NM_032644 NM_032710 NM_032725 NM_032728 NM_032788 NM_032794 NM_032855 NM_032869 NM_032874 NM_032898 NM_032900 NM_032932 NM_032950 NM_032966 NM_032967 NM_032971 NM_032972 NM_032992 NM_033014 NM_033030 NM_033045 NM_033109 NM_033141 NM_033181 NM_033182 NM_033220 NM_033274 NM_033346 NM_033357 NM_033410 NM_033425 NM_033429 NM_033505 NM_033513 NM_033550 NM_033671 NM_048368 NM_052815 NM_052858 NM_052884 NM_052916 NM_052919 NM_052926 NM_052928 NM_052941 NM_052949 NM_052988 NM_053044 NM_054027 NM_054035 NM_057180 NM_058178 NM_078470 NM_078473 NM_078625 NM_080551 NM_080591 NM_080607 NM_080723 NM_080738 NM_080758 NM_080836 NM_080876 NM_080927 NM_130440 NM_130775 NM_133170 NM_133264 NM_133332 NM_133333 NM_133371 NM_133375 NM_133444 NM_133463 NM_133487 NM_133496 NM_134442 NM_138278 NM_138287 NM_138368 NM_138393 NM_138450 NM_138451 NM_138454 NM_138456 NM_138458 NM_138468 NM_138494 NM_138619 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_138699 NM_138706 NM_138726 NM_138727 NM_138728 NM_138788 NM_138801 NM_138806 NM_138983 NM_138998 NM_139028 NM_139157 NM_139158 NM_139207 NM_139275 NM_139320 NM_144582 NM_144597 NM_144613 NM_144615 NM_144684 NM_144687 NM_144698 NM_144721 NM_144964 NM_144973 NM_144991 NM_144999 NM_145011 NM_145013 NM_145039 NM_145042 NM_145055 NM_145060 NM_145238 NM_145259 NM_145294 NM_145305 NM_145306 NM_145320 NM_145321 NM_145322 NM_145323 NM_145324 NM_145341 NM_145343 NM_145344 NM_145347 NM_145348 NM_145699 NM_145728 NM_145752 NM_145818 NM_145861 NM_145868 NM_145869 NM_147192 NM_147780 NM_147781 NM_147782 NM_147783 NM_148171 NM_148903 NM_148911 NM_148912 NM_148913 NM_148915 NM_148916 NM_148968 NM_148969 NM_148971 NM_148972 NM_148973 NM_148974 NM_148980 NM_152227 NM_152240 NM_152247 NM_152253 NM_152255 NM_152290 NM_152361 NM_152362 NM_152472 NM_152475 NM_152477 NM_152489 NM_152496 NM_152529 NM_152531 NM_152547 NM_152557 NM_152569 NM_152586 NM_152595 NM_152636 NM_152675 NM_152681 NM_152684 NM_152693 NM_152724 NM_152757 NM_152903 NM_152913 NM_153041 NM_153186 NM_153212 NM_153231 NM_153260 NM_153346 NM_153358 NM_153367 NM_153442 NM_153497 NM_153608 NM_153613 NM_153639 NM_153687 NM_153705 NM_153717 NM_153754 NM_153759 NM_153828 NM_156036 NM_170601 NM_170694 NM_170709 NM_170710 NM_170771 NM_170773 NM_170780 NM_171825 NM_172014 NM_172225 NM_172229 NM_172247 NM_172248 NM_172249 NM_173055 NM_173056 NM_173057 NM_173058 NM_173092 NM_173163 NM_173344 NM_173355 NM_173462 NM_173502 NM_173510 NM_173511 NM_173528 NM_173570 NM_173605 NM_173607 NM_173811 NM_174902 NM_174911 NM_174939 NM_175063 NM_175069 NM_175567 NM_175609 NM_175629 NM_175859 NM_175871 NM_175872 NM_175923 NM_175931 NM_176095 NM_176816 NM_176871 NM_177405 NM_177532 NM_177972 NM_178000 NM_178001 NM_178002 NM_178003 NM_178008 NM_178037 NM_178038 NM_178039 NM_178040 NM_178128 NM_178175 NM_178272 NM_178273 NM_178314 NM_178324 NM_178514 NM_178516 NM_178568 NM_178578 NM_178579 NM_178582 NM_178586 NM_178819 NM_181041 NM_181265 NM_181349 NM_181357 NM_181359 NM_181481 NM_181482 NM_181483 NM_181690 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182497 NM_182502 NM_182573 NM_182578 NM_182584 NM_182594 NM_182607 NM_182634 NM_182643 NM_182734 NM_182827 NM_182847 NM_182975 NM_183412 NM_183413 NM_184042 NM_194071 NM_194283 NM_194295 NM_194313 NM_194317 NM_197956 NM_197970 NM_198074 NM_198080 NM_198129 NM_198196 NM_198207 NM_198213 NM_198232 NM_198234 NM_198235 NM_198291 NM_198320 NM_198327 NM_198328 NM_198426 NM_198462 NM_198480 NM_198484 NM_198493 NM_198502 NM_198542 NM_198549 NM_198562 NM_198571 NM_198799 NM_198835 NM_198843 NM_198850 NM_198887 NM_198926 NM_198993 NM_199050 NM_199072 NM_199124 NM_199139 NM_199246 NM_199262 NM_199343 NM_199415 NM_199462 NM_199464 NM_201253 NM_201280 NM_201348 NM_201397 NM_201428 NM_201429 NM_201430 NM_201431 NM_201632 NM_201634 NM_203353 NM_203417 NM_203418 NM_203426 NM_203445 NM_203452 NM_203453 NM_203506 NM_206538 NM_206835 NM_206893 NM_206925 NM_207003 NM_207320 NM_207324 NM_207357 NM_207367 NM_207368 NM_207379 NM_207383 NM_207405 NM_207438 NM_207447 NM_207454 NM_207463 NM_207467 NM_207470 NM_207475 NM_207477 NM_207478 NM_207482 NM_207488 NM_207520 NM_207521 NM_207672 NM_212464 NM_212467 NM_212469 NM_213566 NM_213605 NM_213612 NM_213618 NM_213648 XM_029962 XM_032901 XM_032945 XM_042301 XM_042698 XM_046531 XM_047550 XM_047554 XM_047610 XM_048592 XM_084529 XM_087386 XM_098828 XM_114166 XM_117514 XM_166160 XM_208990 XM_209155 XM_209655 XM_211086 XM_211805 XM_290502 XM_290527 XM_290540 XM_290777 XM_291019 XM_291947 XM_292717 XM_370758 XM_370845 XM_370849 XM_370928 XM_371018 XM_371132 XM_371184 XM_371474 XM_371590 XM_371664 XM_371668 XM_371783 XM_371820 XM_371851 XM_372038 XM_372193 XM_372198 XM_372267 XM_372273 XM_373606 XM_373744 XM_373763 XM_373765 XM_373847 XM_373883 XM_373896 XM_373950 XM_374004 XM_374069 XM_374086 XM_374099 XM_374295 XM_374781 XM_374973 XM_374976 XM_375007 XM_375065 XM_375090 XM_375163 XM_375174 XM_375183 XM_375373 XM_375606 XM_375713 XM_375816 XM_375929 XM_376207 XM_376241 XM_376278 XM_376522 XM_376607 XM_376658 XM_376905 XM_376981 XM_378203 XM_378240 XM_378247 XM_378259 XM_378321 XM_378356 XM_378398 XM_378456 XM_378516 XM_378529 XM_378535 XM_378546 XM_378590 XM_378631 XM_378678 XM_378692 XM_378712 XM_378783 XM_378825 XM_378843 XM_378970 XM_378973 XM_378993 XM_379030 XM_379041 XM_379075 XM_379079 XM_379096 XM_379100 XM_379118 XM_379123 XM_379135 XM_379136 XM_379145 XM_379154 XM_379214 XM_379243 XM_379249 XM_379255 XM_379381 XM_379406 XM_379417 XM_379432 XM_379458 XM_379510 XM_379512 XM_379541 XM_379582 XM_379586 XM_379637 XM_379664 XM_379665 XM_379696 XM_379722 XM_379730 XM_379786 XM_379809 XM_379827 XM_379858 XM_379897 XM_380121 XM_380131 XM_380135 XM_495881 XM_495888 XM_495908 XM_495909 XM_495920 XM_496077 XM_496093 XM_496156 XM_496239 XM_496408 XM_496549 XM_496690 XM_496692 XM_496844 XM_496907 XM_497092 XM_498500 XM_498559 XM_498569 XM_498572 XM_498578 XM_498632 XM_498658 XM_498666 XM_498683 XM_498739 XM_498815 XM_498829 XM_498876 XM_498882 XM_498894 XM_498898 XM_498910 XM_498912 XM_498917 XM_498932 XM_498998 XM_499142 XM_499148 XM_499149 XM_499161 XM_499177 XM_499185 XM_499276 XM_499314 XM_499343 XM_499522 XM_499564 XM_499577 XM_499595 XR_000184 XR_000227 XR_000265 XR_000294	Genes with multiple seed matches: NM_000136 NM_000527 NM_000664 NM_000821 NM_000849 NM_000997 NM_001007529 NM_001008234 NM_001008493 NM_001009880 NM_001013649 NM_001025202 NM_001908 NM_001992 NM_002061 NM_002695 NM_002716 NM_002725 NM_002928 NM_003320 NM_004804 NM_005044 NM_005417 NM_005647 NM_005687 NM_005920 NM_007144 NM_012425 NM_013257 NM_014867 NM_014919 NM_014945 NM_014994 NM_015074 NM_015151 NM_015229 NM_015264 NM_015318 NM_015375 NM_016169 NM_016255 NM_017656 NM_017709 NM_018177 NM_018212 NM_018712 NM_020699 NM_020714 NM_020839 NM_020933 NM_020956 NM_021167 NM_021645 NM_022470 NM_022777 NM_024512 NM_024561 NM_024607 NM_024909 NM_030655 NM_031295 NM_032208 NM_032285 NM_032433 NM_052919 NM_052928 NM_078470 NM_133332 NM_133333 NM_144582 NM_144613 NM_147780 NM_147781 NM_147782 NM_147783 NM_148915 NM_152240 NM_152362 NM_152496 NM_152675 NM_152724 NM_153260 NM_170709 NM_175069 NM_177972 NM_181041 NM_182734 NM_198291 NM_198549 NM_198835 NM_198887 NM_199262 NM_199462 NM_201348 NM_207454 NM_207477 NM_213566 XM_048592 XM_290502 XM_371820 XM_378993 XM_379075 XM_379079 XM_379096 XM_379664 XM_379665 XM_496408 XM_498683 XM_499161

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA