VIRsiRNAdb

Predicted off-targets seeds for siRNA "cuuacauagcucgcgucuc" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1453.
Total Genes with multiple seed matches: 137.
Genes with at least one seed match: NM_000071 NM_000094 NM_000131 NM_000148 NM_000159 NM_000164 NM_000166 NM_000195 NM_000199 NM_000206 NM_000235 NM_000237 NM_000265 NM_000278 NM_000304 NM_000332 NM_000376 NM_000381 NM_000407 NM_000451 NM_000522 NM_000525 NM_000533 NM_000539 NM_000544 NM_000545 NM_000596 NM_000629 NM_000664 NM_000681 NM_000719 NM_000817 NM_000841 NM_000842 NM_000909 NM_000913 NM_000991 NM_001001349 NM_001001412 NM_001001481 NM_001001482 NM_001001502 NM_001001693 NM_001001791 NM_001001852 NM_001001895 NM_001001938 NM_001002021 NM_001002031 NM_001002909 NM_001003399 NM_001003665 NM_001003698 NM_001003699 NM_001003799 NM_001003806 NM_001003891 NM_001004056 NM_001004057 NM_001004065 NM_001004302 NM_001004335 NM_001004336 NM_001004347 NM_001004354 NM_001005388 NM_001005404 NM_001005407 NM_001005849 NM_001006113 NM_001006657 NM_001007024 NM_001007025 NM_001007239 NM_001007279 NM_001007525 NM_001008215 NM_001008234 NM_001008563 NM_001008658 NM_001008844 NM_001008895 NM_001009553 NM_001009610 NM_001009880 NM_001009913 NM_001009956 NM_001009991 NM_001010846 NM_001010866 NM_001010867 NM_001010891 NM_001010913 NM_001010924 NM_001010938 NM_001011700 NM_001012270 NM_001012271 NM_001012339 NM_001012644 NM_001012651 NM_001012960 NM_001012981 NM_001012982 NM_001013029 NM_001013415 NM_001013437 NM_001013617 NM_001013618 NM_001013652 NM_001013667 NM_001013670 NM_001013673 NM_001013675 NM_001013676 NM_001013685 NM_001013695 NM_001013721 NM_001014373 NM_001014809 NM_001014987 NM_001014988 NM_001014989 NM_001015877 NM_001015885 NM_001017371 NM_001017535 NM_001017916 NM_001017917 NM_001017918 NM_001017989 NM_001018050 NM_001018051 NM_001018052 NM_001023568 NM_001024216 NM_001024598 NM_001024646 NM_001024669 NM_001024670 NM_001024676 NM_001024733 NM_001024808 NM_001024843 NM_001025076 NM_001025077 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001025108 NM_001025193 NM_001025242 NM_001025243 NM_001049 NM_001066 NM_001092 NM_001122 NM_001125 NM_001168 NM_001186 NM_001190 NM_001229 NM_001246 NM_001254 NM_001265 NM_001313 NM_001315 NM_001361 NM_001375 NM_001400 NM_001419 NM_001427 NM_001430 NM_001438 NM_001439 NM_001454 NM_001489 NM_001512 NM_001519 NM_001569 NM_001616 NM_001630 NM_001642 NM_001659 NM_001678 NM_001694 NM_001698 NM_001740 NM_001747 NM_001760 NM_001766 NM_001823 NM_001875 NM_001915 NM_002011 NM_002025 NM_002070 NM_002080 NM_002081 NM_002084 NM_002111 NM_002126 NM_002202 NM_002285 NM_002309 NM_002319 NM_002340 NM_002347 NM_002359 NM_002360 NM_002375 NM_002385 NM_002396 NM_002442 NM_002501 NM_002507 NM_002509 NM_002522 NM_002547 NM_002610 NM_002613 NM_002622 NM_002626 NM_002699 NM_002719 NM_002744 NM_002768 NM_002827 NM_002834 NM_002847 NM_002911 NM_002913 NM_002918 NM_002936 NM_002955 NM_002983 NM_003003 NM_003020 NM_003045 NM_003060 NM_003085 NM_003088 NM_003097 NM_003102 NM_003111 NM_003150 NM_003152 NM_003165 NM_003189 NM_003200 NM_003215 NM_003275 NM_003320 NM_003349 NM_003388 NM_003486 NM_003516 NM_003526 NM_003565 NM_003575 NM_003589 NM_003590 NM_003593 NM_003596 NM_003605 NM_003610 NM_003625 NM_003644 NM_003648 NM_003679 NM_003681 NM_003703 NM_003704 NM_003724 NM_003795 NM_003808 NM_003820 NM_003822 NM_003831 NM_003895 NM_003899 NM_003901 NM_003913 NM_003939 NM_003953 NM_003987 NM_003988 NM_003989 NM_003990 NM_004069 NM_004093 NM_004103 NM_004110 NM_004145 NM_004160 NM_004171 NM_004273 NM_004293 NM_004309 NM_004310 NM_004319 NM_004322 NM_004331 NM_004339 NM_004364 NM_004380 NM_004409 NM_004411 NM_004415 NM_004430 NM_004437 NM_004473 NM_004475 NM_004483 NM_004516 NM_004518 NM_004527 NM_004561 NM_004566 NM_004571 NM_004588 NM_004599 NM_004603 NM_004614 NM_004665 NM_004669 NM_004732 NM_004745 NM_004778 NM_004845 NM_004871 NM_004893 NM_004907 NM_004928 NM_005002 NM_005049 NM_005069 NM_005095 NM_005098 NM_005116 NM_005137 NM_005176 NM_005177 NM_005185 NM_005187 NM_005194 NM_005219 NM_005247 NM_005253 NM_005307 NM_005338 NM_005354 NM_005373 NM_005380 NM_005385 NM_005392 NM_005432 NM_005446 NM_005458 NM_005472 NM_005481 NM_005491 NM_005548 NM_005553 NM_005554 NM_005558 NM_005561 NM_005573 NM_005597 NM_005634 NM_005677 NM_005678 NM_005692 NM_005732 NM_005766 NM_005768 NM_005781 NM_005782 NM_005806 NM_005828 NM_005851 NM_005860 NM_005866 NM_005902 NM_005904 NM_005910 NM_005927 NM_005933 NM_005965 NM_005967 NM_005977 NM_005990 NM_005996 NM_006014 NM_006037 NM_006148 NM_006162 NM_006207 NM_006255 NM_006277 NM_006315 NM_006317 NM_006321 NM_006324 NM_006418 NM_006454 NM_006462 NM_006465 NM_006504 NM_006532 NM_006538 NM_006561 NM_006578 NM_006590 NM_006599 NM_006640 NM_006646 NM_006675 NM_006676 NM_006693 NM_006700 NM_006732 NM_006738 NM_006757 NM_006772 NM_006847 NM_006861 NM_006869 NM_006877 NM_006896 NM_006898 NM_006902 NM_006927 NM_006937 NM_006989 NM_007014 NM_007030 NM_007040 NM_007087 NM_007088 NM_007103 NM_007106 NM_007118 NM_007200 NM_007203 NM_007229 NM_007306 NM_007345 NM_007346 NM_007349 NM_007357 NM_007368 NM_007375 NM_009589 NM_012074 NM_012075 NM_012109 NM_012151 NM_012174 NM_012247 NM_012286 NM_012287 NM_012308 NM_012309 NM_012384 NM_012395 NM_012397 NM_012402 NM_012409 NM_012427 NM_012429 NM_012446 NM_012479 NM_013230 NM_013279 NM_013282 NM_013323 NM_013351 NM_013364 NM_013373 NM_013382 NM_013385 NM_013390 NM_013397 NM_013399 NM_013434 NM_013450 NM_013976 NM_013999 NM_014012 NM_014055 NM_014062 NM_014112 NM_014207 NM_014218 NM_014219 NM_014239 NM_014286 NM_014292 NM_014293 NM_014310 NM_014337 NM_014383 NM_014387 NM_014427 NM_014431 NM_014518 NM_014570 NM_014577 NM_014587 NM_014600 NM_014631 NM_014647 NM_014655 NM_014661 NM_014665 NM_014674 NM_014678 NM_014686 NM_014704 NM_014715 NM_014723 NM_014732 NM_014737 NM_014739 NM_014743 NM_014747 NM_014765 NM_014767 NM_014789 NM_014792 NM_014798 NM_014800 NM_014801 NM_014806 NM_014844 NM_014845 NM_014848 NM_014867 NM_014872 NM_014873 NM_014909 NM_014916 NM_014919 NM_014955 NM_014957 NM_014963 NM_014974 NM_014991 NM_015002 NM_015005 NM_015020 NM_015035 NM_015047 NM_015056 NM_015066 NM_015071 NM_015074 NM_015076 NM_015085 NM_015088 NM_015089 NM_015090 NM_015094 NM_015099 NM_015111 NM_015124 NM_015144 NM_015166 NM_015176 NM_015193 NM_015205 NM_015226 NM_015227 NM_015229 NM_015235 NM_015245 NM_015246 NM_015254 NM_015257 NM_015264 NM_015267 NM_015296 NM_015305 NM_015310 NM_015315 NM_015326 NM_015329 NM_015338 NM_015346 NM_015362 NM_015374 NM_015417 NM_015439 NM_015509 NM_015544 NM_015553 NM_015557 NM_015559 NM_015621 NM_015651 NM_015658 NM_015666 NM_015675 NM_015695 NM_015696 NM_015705 NM_015714 NM_015722 NM_015833 NM_015834 NM_015865 NM_015889 NM_015892 NM_015935 NM_015962 NM_015981 NM_015995 NM_015996 NM_016084 NM_016114 NM_016131 NM_016132 NM_016194 NM_016224 NM_016255 NM_016343 NM_016397 NM_016426 NM_016458 NM_016494 NM_016532 NM_016544 NM_016563 NM_016569 NM_016604 NM_016611 NM_016613 NM_016647 NM_016735 NM_016834 NM_016835 NM_016841 NM_016941 NM_017437 NM_017444 NM_017542 NM_017556 NM_017586 NM_017595 NM_017617 NM_017621 NM_017622 NM_017662 NM_017708 NM_017714 NM_017728 NM_017740 NM_017766 NM_017797 NM_017799 NM_017806 NM_017817 NM_017828 NM_017833 NM_017869 NM_017902 NM_017905 NM_018026 NM_018047 NM_018121 NM_018131 NM_018155 NM_018202 NM_018206 NM_018209 NM_018215 NM_018226 NM_018243 NM_018279 NM_018286 NM_018299 NM_018315 NM_018316 NM_018320 NM_018342 NM_018364 NM_018382 NM_018450 NM_018643 NM_018660 NM_018940 NM_018948 NM_018952 NM_018961 NM_018992 NM_019008 NM_019009 NM_019074 NM_019081 NM_019099 NM_019595 NM_019616 NM_019845 NM_019854 NM_019855 NM_019885 NM_019887 NM_020038 NM_020064 NM_020126 NM_020128 NM_020151 NM_020163 NM_020180 NM_020182 NM_020237 NM_020310 NM_020407 NM_020428 NM_020431 NM_020438 NM_020440 NM_020448 NM_020451 NM_020452 NM_020472 NM_020473 NM_020528 NM_020661 NM_020695 NM_020708 NM_020710 NM_020724 NM_020728 NM_020746 NM_020764 NM_020779 NM_020784 NM_020815 NM_020825 NM_020851 NM_020972 NM_020973 NM_020993 NM_021004 NM_021020 NM_021064 NM_021093 NM_021098 NM_021116 NM_021149 NM_021198 NM_021226 NM_021575 NM_021638 NM_021645 NM_021798 NM_021806 NM_021808 NM_021938 NM_021961 NM_021962 NM_021988 NM_021992 NM_022044 NM_022049 NM_022054 NM_022081 NM_022099 NM_022112 NM_022114 NM_022123 NM_022131 NM_022343 NM_022369 NM_022442 NM_022458 NM_022468 NM_022469 NM_022491 NM_022497 NM_022716 NM_022718 NM_022749 NM_022753 NM_022758 NM_022759 NM_022766 NM_022773 NM_022805 NM_022806 NM_022807 NM_022808 NM_022818 NM_022828 NM_022836 NM_022963 NM_023018 NM_023067 NM_023078 NM_023080 NM_024014 NM_024025 NM_024026 NM_024048 NM_024076 NM_024109 NM_024294 NM_024302 NM_024303 NM_024312 NM_024329 NM_024335 NM_024342 NM_024417 NM_024508 NM_024517 NM_024522 NM_024544 NM_024554 NM_024569 NM_024591 NM_024595 NM_024605 NM_024619 NM_024630 NM_024645 NM_024701 NM_024759 NM_024774 NM_024782 NM_024850 NM_024938 NM_024955 NM_024989 NM_025082 NM_025090 NM_025091 NM_025129 NM_025197 NM_025250 NM_030579 NM_030776 NM_030783 NM_030796 NM_030884 NM_030914 NM_030933 NM_031216 NM_031227 NM_031228 NM_031229 NM_031268 NM_031287 NM_031291 NM_031304 NM_031305 NM_031407 NM_031442 NM_031448 NM_031455 NM_031462 NM_031466 NM_031476 NM_031954 NM_032017 NM_032045 NM_032120 NM_032144 NM_032179 NM_032181 NM_032189 NM_032268 NM_032276 NM_032287 NM_032295 NM_032296 NM_032298 NM_032345 NM_032375 NM_032421 NM_032431 NM_032432 NM_032458 NM_032489 NM_032493 NM_032501 NM_032644 NM_032664 NM_032679 NM_032711 NM_032718 NM_032737 NM_032750 NM_032785 NM_032800 NM_032826 NM_032853 NM_032866 NM_032871 NM_032873 NM_032878 NM_032932 NM_032950 NM_032989 NM_032996 NM_033030 NM_033103 NM_033121 NM_033129 NM_033161 NM_033200 NM_033222 NM_033238 NM_033259 NM_033274 NM_033282 NM_033285 NM_033290 NM_033291 NM_033315 NM_033331 NM_033332 NM_033334 NM_033335 NM_033389 NM_033393 NM_033396 NM_033426 NM_033551 NM_033624 NM_033632 NM_033637 NM_044472 NM_052847 NM_052896 NM_052899 NM_052919 NM_053025 NM_053026 NM_053027 NM_053028 NM_053029 NM_053030 NM_053031 NM_053032 NM_053056 NM_053286 NM_058167 NM_058169 NM_058178 NM_058192 NM_058242 NM_078476 NM_078483 NM_078488 NM_079837 NM_080538 NM_080539 NM_080540 NM_080541 NM_080542 NM_080543 NM_080544 NM_080551 NM_080552 NM_080605 NM_080611 NM_080662 NM_080737 NM_080836 NM_130435 NM_130442 NM_130766 NM_130783 NM_130809 NM_130842 NM_130843 NM_133259 NM_133330 NM_133331 NM_133332 NM_133333 NM_133334 NM_133335 NM_133336 NM_133367 NM_133448 NM_133482 NM_133634 NM_133635 NM_133646 NM_138338 NM_138342 NM_138385 NM_138445 NM_138567 NM_138609 NM_138610 NM_138614 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_138713 NM_138714 NM_138715 NM_138716 NM_138793 NM_138929 NM_138930 NM_138934 NM_138983 NM_138992 NM_139012 NM_139014 NM_139136 NM_139162 NM_139202 NM_139267 NM_139276 NM_144507 NM_144570 NM_144579 NM_144640 NM_144664 NM_144682 NM_144732 NM_144733 NM_144734 NM_144767 NM_144975 NM_144988 NM_144994 NM_144999 NM_145041 NM_145265 NM_145685 NM_145865 NM_145906 NM_147131 NM_147132 NM_147150 NM_147157 NM_147158 NM_147159 NM_147160 NM_148886 NM_152222 NM_152235 NM_152244 NM_152247 NM_152253 NM_152280 NM_152286 NM_152287 NM_152299 NM_152328 NM_152340 NM_152371 NM_152384 NM_152409 NM_152429 NM_152449 NM_152458 NM_152459 NM_152509 NM_152605 NM_152611 NM_152637 NM_152643 NM_152718 NM_152723 NM_152745 NM_152789 NM_152827 NM_152828 NM_152832 NM_152834 NM_152840 NM_152841 NM_152842 NM_152879 NM_152939 NM_153025 NM_153183 NM_153239 NM_153247 NM_153254 NM_153256 NM_153257 NM_153320 NM_153321 NM_153322 NM_153334 NM_153348 NM_153367 NM_153456 NM_153482 NM_153486 NM_153487 NM_153636 NM_153746 NM_153748 NM_156036 NM_156037 NM_170607 NM_170773 NM_170774 NM_171825 NM_171982 NM_172087 NM_172089 NM_172230 NM_172387 NM_172388 NM_172389 NM_173060 NM_173174 NM_173175 NM_173176 NM_173214 NM_173463 NM_173473 NM_173542 NM_173555 NM_173570 NM_173580 NM_173621 NM_173627 NM_173654 NM_173681 NM_173691 NM_173699 NM_173832 NM_173849 NM_174900 NM_174902 NM_174911 NM_175609 NM_175617 NM_175709 NM_175898 NM_175901 NM_175902 NM_175931 NM_176095 NM_176677 NM_177403 NM_177539 NM_177972 NM_177991 NM_178129 NM_178145 NM_178190 NM_178191 NM_178276 NM_178470 NM_178505 NM_178514 NM_178519 NM_178520 NM_178536 NM_178585 NM_178586 NM_178814 NM_178841 NM_178867 NM_181078 NM_181079 NM_181314 NM_181430 NM_181504 NM_181523 NM_181524 NM_181722 NM_181744 NM_181774 NM_181846 NM_181862 NM_182487 NM_182513 NM_182528 NM_182533 NM_182535 NM_182580 NM_182613 NM_182617 NM_182637 NM_182638 NM_182647 NM_182744 NM_182895 NM_182982 NM_183043 NM_183044 NM_183414 NM_194277 NM_194283 NM_194303 NM_194309 NM_194310 NM_194315 NM_194316 NM_194436 NM_194452 NM_194453 NM_194457 NM_194458 NM_197970 NM_198083 NM_198138 NM_198204 NM_198205 NM_198213 NM_198282 NM_198317 NM_198396 NM_198427 NM_198452 NM_198466 NM_198488 NM_198511 NM_198532 NM_198533 NM_198539 NM_198553 NM_198580 NM_198595 NM_198704 NM_198705 NM_198706 NM_198707 NM_198708 NM_198835 NM_198850 NM_198851 NM_198867 NM_198926 NM_198976 NM_199001 NM_199144 NM_199162 NM_199163 NM_199165 NM_199169 NM_199170 NM_199171 NM_199203 NM_199206 NM_199424 NM_199454 NM_199461 NM_199478 NM_201399 NM_201432 NM_201433 NM_201613 NM_201628 NM_203327 NM_203342 NM_203343 NM_203413 NM_203414 NM_203415 NM_203446 NM_203451 NM_203452 NM_203468 NM_203481 NM_203486 NM_205843 NM_205860 NM_206594 NM_206595 NM_206835 NM_206866 NM_206909 NM_206926 NM_207003 NM_207113 NM_207318 NM_207335 NM_207348 NM_207367 NM_207368 NM_207391 NM_207404 NM_207426 NM_207451 NM_207463 NM_207497 NM_207510 NM_207511 NM_207581 NM_213647 NM_213649 NM_213650 NM_213662 XM_032278 XM_032571 XM_032901 XM_042936 XM_048592 XM_053966 XM_055866 XM_063287 XM_065166 XM_084852 XM_209187 XM_209700 XM_211408 XM_290670 XM_290948 XM_291064 XM_291154 XM_295155 XM_295213 XM_370536 XM_370756 XM_370878 XM_370909 XM_371009 XM_371214 XM_371461 XM_371474 XM_371569 XM_371588 XM_371759 XM_372193 XM_372556 XM_373561 XM_373562 XM_373628 XM_373704 XM_373742 XM_373831 XM_373970 XM_374141 XM_374161 XM_374317 XM_374460 XM_375090 XM_375373 XM_375378 XM_375629 XM_376049 XM_376148 XM_376586 XM_376602 XM_376658 XM_376680 XM_377476 XM_378300 XM_378355 XM_378358 XM_378456 XM_378472 XM_378549 XM_378628 XM_378631 XM_378735 XM_378741 XM_378763 XM_378793 XM_378841 XM_378842 XM_378855 XM_378886 XM_378914 XM_378973 XM_379025 XM_379030 XM_379154 XM_379258 XM_379273 XM_379391 XM_379458 XM_379508 XM_379534 XM_379541 XM_379628 XM_379635 XM_379664 XM_379665 XM_379798 XM_379820 XM_379840 XM_379858 XM_379897 XM_379920 XM_379934 XM_380103 XM_380129 XM_380159 XM_380174 XM_495881 XM_495888 XM_495937 XM_496036 XM_496346 XM_496519 XM_496682 XM_496690 XM_496877 XM_496912 XM_496976 XM_497080 XM_498434 XM_498540 XM_498555 XM_498572 XM_498611 XM_498650 XM_498666 XM_498742 XM_498752 XM_498823 XM_498834 XM_498835 XM_498853 XM_498876 XM_498923 XM_498984 XM_499022 XM_499023 XM_499068 XM_499093 XM_499102 XM_499170 XM_499277 XM_499314 XM_499333 XM_499354 XM_499356 XM_499362 XM_499496 XM_499519 XM_499556 XM_499563 XM_499572 XR_000184 XR_000254 XR_000256 XR_000293 XR_000294	Genes with multiple seed matches: NM_000265 NM_000278 NM_000664 NM_000719 NM_001001791 NM_001001852 NM_001001938 NM_001003665 NM_001003698 NM_001003699 NM_001005388 NM_001007024 NM_001007025 NM_001007279 NM_001008563 NM_001010924 NM_001012644 NM_001013685 NM_001014373 NM_001017989 NM_001642 NM_002319 NM_002442 NM_002613 NM_002955 NM_003165 NM_003486 NM_003899 NM_003987 NM_003988 NM_003989 NM_003990 NM_004160 NM_004364 NM_004566 NM_004871 NM_005116 NM_005253 NM_005432 NM_005902 NM_006037 NM_006162 NM_006454 NM_006640 NM_006676 NM_006738 NM_007200 NM_007345 NM_012395 NM_014292 NM_014661 NM_014723 NM_014792 NM_014844 NM_015020 NM_015035 NM_015047 NM_015090 NM_015099 NM_015111 NM_015144 NM_015166 NM_015227 NM_015229 NM_015305 NM_015329 NM_015995 NM_016532 NM_016563 NM_016611 NM_017586 NM_017766 NM_019885 NM_020064 NM_020851 NM_021093 NM_021961 NM_022343 NM_022766 NM_024342 NM_025250 NM_031268 NM_032432 NM_032800 NM_032871 NM_033332 NM_052899 NM_053056 NM_080611 NM_130766 NM_138385 NM_138983 NM_139202 NM_144767 NM_152222 NM_152235 NM_152253 NM_152384 NM_153239 NM_153334 NM_156036 NM_171982 NM_172387 NM_172388 NM_172389 NM_173555 NM_174902 NM_174911 NM_177991 NM_178514 NM_178520 NM_181722 NM_182533 NM_182895 NM_183414 NM_194303 NM_198488 NM_198835 NM_203327 NM_203481 NM_206835 NM_207113 NM_207511 XM_032901 XM_290670 XM_291154 XM_371474 XM_374317 XM_378456 XM_379273 XM_495881 XM_495888 XM_496877 XM_496976 XM_497080 XM_499093 XR_000254

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA