VIRsiRNAdb

Predicted off-targets seeds for siRNA "agccaaccaaccucgaucu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :635.
Total Genes with multiple seed matches: 25.
Genes with at least one seed match: NM_000037 NM_000148 NM_000163 NM_000166 NM_000221 NM_000237 NM_000239 NM_000302 NM_000351 NM_000405 NM_000430 NM_000546 NM_000566 NM_000610 NM_000620 NM_000864 NM_000899 NM_001001188 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001001419 NM_001001420 NM_001001681 NM_001001687 NM_001001695 NM_001001698 NM_001002926 NM_001003789 NM_001004352 NM_001005373 NM_001005374 NM_001005413 NM_001005414 NM_001005502 NM_001007188 NM_001007538 NM_001007540 NM_001008408 NM_001008494 NM_001008726 NM_001008737 NM_001010931 NM_001010933 NM_001011708 NM_001012267 NM_001012651 NM_001012733 NM_001012734 NM_001012981 NM_001013624 NM_001013629 NM_001013633 NM_001013640 NM_001013681 NM_001013716 NM_001013724 NM_001014831 NM_001014832 NM_001014833 NM_001014834 NM_001014835 NM_001017989 NM_001018065 NM_001018066 NM_001024596 NM_001024646 NM_001024843 NM_001025266 NM_001071 NM_001102 NM_001117 NM_001160 NM_001187 NM_001253 NM_001291 NM_001296 NM_001319 NM_001358 NM_001387 NM_001400 NM_001546 NM_001552 NM_001616 NM_001679 NM_001709 NM_001874 NM_001941 NM_001981 NM_002031 NM_002142 NM_002158 NM_002207 NM_002228 NM_002232 NM_002234 NM_002235 NM_002254 NM_002283 NM_002293 NM_002365 NM_002392 NM_002406 NM_002500 NM_002581 NM_002644 NM_002646 NM_002655 NM_002731 NM_002737 NM_002816 NM_002906 NM_002923 NM_002986 NM_003106 NM_003108 NM_003190 NM_003205 NM_003212 NM_003239 NM_003255 NM_003256 NM_003307 NM_003382 NM_003385 NM_003419 NM_003423 NM_003439 NM_003507 NM_003548 NM_003559 NM_003644 NM_003661 NM_003693 NM_003719 NM_003775 NM_003781 NM_003839 NM_003861 NM_003872 NM_003918 NM_003924 NM_003994 NM_004090 NM_004121 NM_004140 NM_004155 NM_004162 NM_004170 NM_004171 NM_004229 NM_004273 NM_004308 NM_004337 NM_004454 NM_004583 NM_004627 NM_004650 NM_004791 NM_004915 NM_004972 NM_004985 NM_005026 NM_005027 NM_005061 NM_005073 NM_005082 NM_005085 NM_005119 NM_005184 NM_005238 NM_005304 NM_005354 NM_005375 NM_005433 NM_005434 NM_005450 NM_005475 NM_005491 NM_005503 NM_005513 NM_005520 NM_005652 NM_005747 NM_005821 NM_005884 NM_005903 NM_005920 NM_006047 NM_006079 NM_006089 NM_006121 NM_006202 NM_006203 NM_006276 NM_006282 NM_006283 NM_006289 NM_006413 NM_006431 NM_006433 NM_006488 NM_006496 NM_006549 NM_006555 NM_006624 NM_006631 NM_006643 NM_006644 NM_006710 NM_006729 NM_006738 NM_006774 NM_006873 NM_006878 NM_006879 NM_006880 NM_006881 NM_006882 NM_006915 NM_006925 NM_006981 NM_007006 NM_007048 NM_007057 NM_007073 NM_007081 NM_007125 NM_007157 NM_007200 NM_007236 NM_007352 NM_012081 NM_012090 NM_012096 NM_012099 NM_012118 NM_012343 NM_012460 NM_012464 NM_012483 NM_013229 NM_013230 NM_013255 NM_013262 NM_013341 NM_013359 NM_013368 NM_013412 NM_013441 NM_014005 NM_014066 NM_014080 NM_014106 NM_014218 NM_014280 NM_014291 NM_014356 NM_014368 NM_014383 NM_014608 NM_014657 NM_014668 NM_014686 NM_014730 NM_014743 NM_014783 NM_014811 NM_014830 NM_014861 NM_014864 NM_014880 NM_014913 NM_014920 NM_014959 NM_014999 NM_015078 NM_015088 NM_015235 NM_015266 NM_015330 NM_015423 NM_015526 NM_015537 NM_015544 NM_015558 NM_015564 NM_015568 NM_015886 NM_016018 NM_016096 NM_016141 NM_016230 NM_016263 NM_016272 NM_016282 NM_016352 NM_016513 NM_016531 NM_016540 NM_016544 NM_016605 NM_016818 NM_016831 NM_017415 NM_017437 NM_017594 NM_017610 NM_017629 NM_017631 NM_017649 NM_017666 NM_017668 NM_017693 NM_017729 NM_017740 NM_017853 NM_017967 NM_017974 NM_018004 NM_018013 NM_018069 NM_018073 NM_018138 NM_018215 NM_018326 NM_018362 NM_018382 NM_018390 NM_018439 NM_018553 NM_018566 NM_018660 NM_018715 NM_018728 NM_018992 NM_019854 NM_020133 NM_020211 NM_020213 NM_020237 NM_020348 NM_020451 NM_020462 NM_020463 NM_020475 NM_020476 NM_020477 NM_020639 NM_020642 NM_020708 NM_020728 NM_020796 NM_020844 NM_020919 NM_020956 NM_020971 NM_021033 NM_021093 NM_021153 NM_021154 NM_021155 NM_021167 NM_021255 NM_021572 NM_021804 NM_021916 NM_021922 NM_022058 NM_022076 NM_022079 NM_022308 NM_022459 NM_022461 NM_022463 NM_022491 NM_022754 NM_022784 NM_022818 NM_022912 NM_024111 NM_024307 NM_024423 NM_024638 NM_024641 NM_024647 NM_024656 NM_024683 NM_024728 NM_024774 NM_024784 NM_024807 NM_024859 NM_024865 NM_024939 NM_025213 NM_030631 NM_030651 NM_030774 NM_030803 NM_031296 NM_031437 NM_031912 NM_032109 NM_032174 NM_032228 NM_032262 NM_032329 NM_032656 NM_032735 NM_032853 NM_032869 NM_032900 NM_032906 NM_032997 NM_033044 NM_033360 NM_052917 NM_052996 NM_058179 NM_080666 NM_080669 NM_130845 NM_133180 NM_133375 NM_133468 NM_133480 NM_138278 NM_138287 NM_138361 NM_138415 NM_138479 NM_138769 NM_138801 NM_139068 NM_139069 NM_139204 NM_144599 NM_144607 NM_144679 NM_144767 NM_144974 NM_145015 NM_145056 NM_145206 NM_145343 NM_145349 NM_145350 NM_145351 NM_145352 NM_145693 NM_147147 NM_147193 NM_152291 NM_152449 NM_152458 NM_152487 NM_152497 NM_152554 NM_152556 NM_152558 NM_152608 NM_152757 NM_152777 NM_152793 NM_152838 NM_152999 NM_153261 NM_153371 NM_153499 NM_153500 NM_153691 NM_153708 NM_153840 NM_156036 NM_170731 NM_170732 NM_170733 NM_170734 NM_170735 NM_170743 NM_172216 NM_172226 NM_173064 NM_173065 NM_173198 NM_173200 NM_173639 NM_173667 NM_173681 NM_173688 NM_174871 NM_174934 NM_174937 NM_175575 NM_175709 NM_175883 NM_176880 NM_177442 NM_177963 NM_178128 NM_178135 NM_178540 NM_178815 NM_178836 NM_181489 NM_181679 NM_181727 NM_181782 NM_181785 NM_181846 NM_181861 NM_181868 NM_181869 NM_181877 NM_182507 NM_182516 NM_182533 NM_182585 NM_182631 NM_182663 NM_182664 NM_182665 NM_182686 NM_182832 NM_182901 NM_182904 NM_182948 NM_182977 NM_183050 NM_194252 NM_194282 NM_194310 NM_198058 NM_198189 NM_198320 NM_198479 NM_198887 NM_198890 NM_198935 NM_199072 NM_199076 NM_199160 NM_201266 NM_201279 NM_201432 NM_201433 NM_201434 NM_201628 NM_201651 NM_203344 NM_205852 NM_206926 NM_207036 NM_207037 NM_207038 NM_207040 NM_207174 NM_207309 NM_207333 NM_207385 NM_207400 NM_207401 NM_207404 NM_207423 NM_207444 NM_207499 NM_207504 NM_207510 NM_207627 NM_207628 NM_207629 NM_207630 NM_213598 XM_032571 XM_048592 XM_048898 XM_051200 XM_058720 XM_059689 XM_087386 XM_087762 XM_167044 XM_212170 XM_290502 XM_290546 XM_290615 XM_371302 XM_371304 XM_371759 XM_371801 XM_372193 XM_372723 XM_373660 XM_373688 XM_373744 XM_374141 XM_374766 XM_375373 XM_375590 XM_376822 XM_378316 XM_378430 XM_378453 XM_378701 XM_378860 XM_379069 XM_379146 XM_379154 XM_379255 XM_379322 XM_379386 XM_379603 XM_379619 XM_496093 XM_496849 XM_496907 XM_498465 XM_498473 XM_498481 XM_498555 XM_498649 XM_498662 XM_498750 XM_498902 XM_498946 XM_498994 XM_499257 XM_499309 XM_499343 XM_499595 XR_000261 XR_000265 XR_000292	Genes with multiple seed matches: NM_000148 NM_001001419 NM_001001420 NM_001012651 NM_001387 NM_002644 NM_003108 NM_003190 NM_003439 NM_004155 NM_004454 NM_005903 NM_006283 NM_014743 NM_014864 NM_024784 NM_024859 NM_144599 NM_181489 XM_167044 XM_379322 XM_379619 XM_498902 XR_000261 XR_000292

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA