VIRsiRNAdb

Predicted off-targets seeds for siRNA "aacaaagaaggcaucguaugg" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :914.
Total Genes with multiple seed matches: 46.
Genes with at least one seed match: NM_000053 NM_000104 NM_000125 NM_000133 NM_000158 NM_000160 NM_000188 NM_000214 NM_000245 NM_000275 NM_000276 NM_000299 NM_000344 NM_000418 NM_000430 NM_000493 NM_000531 NM_000541 NM_000605 NM_000617 NM_000641 NM_000664 NM_000695 NM_000724 NM_000788 NM_000801 NM_000809 NM_000814 NM_000833 NM_000844 NM_000896 NM_000916 NM_000951 NM_000997 NM_001001342 NM_001001484 NM_001001874 NM_001001890 NM_001001928 NM_001001929 NM_001001930 NM_001002861 NM_001002862 NM_001003940 NM_001003942 NM_001003943 NM_001004441 NM_001005337 NM_001005373 NM_001005374 NM_001005386 NM_001005387 NM_001005527 NM_001005739 NM_001005918 NM_001006113 NM_001006616 NM_001006932 NM_001006940 NM_001006941 NM_001006942 NM_001007024 NM_001007025 NM_001007071 NM_001007226 NM_001007227 NM_001007228 NM_001007229 NM_001007230 NM_001007246 NM_001007254 NM_001008407 NM_001008411 NM_001008491 NM_001008492 NM_001008564 NM_001009186 NM_001009913 NM_001009956 NM_001009957 NM_001009958 NM_001009960 NM_001010000 NM_001010908 NM_001012981 NM_001013625 NM_001013675 NM_001013679 NM_001013704 NM_001013706 NM_001014809 NM_001015045 NM_001017371 NM_001017392 NM_001017963 NM_001017992 NM_001017995 NM_001018056 NM_001018090 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018097 NM_001018098 NM_001018102 NM_001024460 NM_001025077 NM_001025079 NM_001025080 NM_001025233 NM_001025242 NM_001025243 NM_001025266 NM_001047 NM_001056 NM_001131 NM_001163 NM_001228 NM_001256 NM_001298 NM_001300 NM_001303 NM_001313 NM_001338 NM_001356 NM_001375 NM_001430 NM_001470 NM_001490 NM_001537 NM_001569 NM_001587 NM_001611 NM_001634 NM_001655 NM_001668 NM_001677 NM_001695 NM_001724 NM_001754 NM_001761 NM_001762 NM_001777 NM_001816 NM_001830 NM_001858 NM_001918 NM_002015 NM_002124 NM_002126 NM_002233 NM_002267 NM_002340 NM_002389 NM_002397 NM_002481 NM_002498 NM_002505 NM_002543 NM_002558 NM_002582 NM_002613 NM_002639 NM_002757 NM_002760 NM_002829 NM_002838 NM_002886 NM_002956 NM_002993 NM_002994 NM_003111 NM_003113 NM_003120 NM_003150 NM_003153 NM_003211 NM_003320 NM_003327 NM_003344 NM_003383 NM_003409 NM_003412 NM_003455 NM_003462 NM_003463 NM_003563 NM_003573 NM_003580 NM_003617 NM_003631 NM_003644 NM_003681 NM_003716 NM_003947 NM_003952 NM_004063 NM_004109 NM_004128 NM_004177 NM_004233 NM_004256 NM_004273 NM_004311 NM_004389 NM_004404 NM_004423 NM_004454 NM_004457 NM_004469 NM_004481 NM_004518 NM_004575 NM_004577 NM_004602 NM_004607 NM_004627 NM_004645 NM_004660 NM_004711 NM_004768 NM_004776 NM_004781 NM_004815 NM_004866 NM_004871 NM_004965 NM_005036 NM_005044 NM_005076 NM_005086 NM_005127 NM_005197 NM_005214 NM_005253 NM_005284 NM_005348 NM_005378 NM_005399 NM_005431 NM_005435 NM_005483 NM_005515 NM_005518 NM_005530 NM_005722 NM_005725 NM_005752 NM_005763 NM_005787 NM_005840 NM_005845 NM_005870 NM_005902 NM_005904 NM_005911 NM_005924 NM_005969 NM_006031 NM_006035 NM_006047 NM_006048 NM_006133 NM_006155 NM_006162 NM_006203 NM_006212 NM_006283 NM_006355 NM_006371 NM_006464 NM_006500 NM_006532 NM_006553 NM_006564 NM_006614 NM_006670 NM_006729 NM_006748 NM_006780 NM_006806 NM_006843 NM_006889 NM_006922 NM_006931 NM_006981 NM_006997 NM_006999 NM_007036 NM_007050 NM_007125 NM_007147 NM_007157 NM_012098 NM_012171 NM_012174 NM_012229 NM_012242 NM_012282 NM_012296 NM_012304 NM_012323 NM_012388 NM_012398 NM_012409 NM_012428 NM_013236 NM_013260 NM_013276 NM_013323 NM_013351 NM_013372 NM_013374 NM_013393 NM_013937 NM_013960 NM_014089 NM_014106 NM_014112 NM_014138 NM_014141 NM_014208 NM_014216 NM_014267 NM_014279 NM_014328 NM_014358 NM_014413 NM_014494 NM_014573 NM_014607 NM_014631 NM_014636 NM_014663 NM_014667 NM_014741 NM_014743 NM_014751 NM_014757 NM_014779 NM_014784 NM_014837 NM_014841 NM_014850 NM_014851 NM_014860 NM_014867 NM_014883 NM_014905 NM_014910 NM_014913 NM_014957 NM_014972 NM_014992 NM_015003 NM_015011 NM_015022 NM_015033 NM_015051 NM_015071 NM_015077 NM_015094 NM_015111 NM_015178 NM_015194 NM_015202 NM_015205 NM_015206 NM_015225 NM_015254 NM_015260 NM_015266 NM_015282 NM_015288 NM_015292 NM_015299 NM_015371 NM_015391 NM_015446 NM_015449 NM_015456 NM_015458 NM_015532 NM_015535 NM_015557 NM_015558 NM_015560 NM_015571 NM_015609 NM_015677 NM_015723 NM_015910 NM_015980 NM_015986 NM_016021 NM_016078 NM_016083 NM_016114 NM_016205 NM_016304 NM_016322 NM_016383 NM_016396 NM_016410 NM_016448 NM_016512 NM_016516 NM_016521 NM_016577 NM_016617 NM_016620 NM_016623 NM_016625 NM_016651 NM_016932 NM_017411 NM_017447 NM_017452 NM_017453 NM_017454 NM_017455 NM_017542 NM_017550 NM_017577 NM_017599 NM_017634 NM_017641 NM_017656 NM_017660 NM_017680 NM_017682 NM_017699 NM_017714 NM_017775 NM_017781 NM_017787 NM_017802 NM_017814 NM_017828 NM_017832 NM_017943 NM_018011 NM_018046 NM_018112 NM_018130 NM_018210 NM_018228 NM_018246 NM_018254 NM_018312 NM_018320 NM_018332 NM_018363 NM_018373 NM_018379 NM_018386 NM_018388 NM_018399 NM_018407 NM_018440 NM_018469 NM_018471 NM_018638 NM_018658 NM_018672 NM_018941 NM_018942 NM_019022 NM_019035 NM_019117 NM_020152 NM_020157 NM_020200 NM_020300 NM_020319 NM_020326 NM_020338 NM_020429 NM_020528 NM_020639 NM_020648 NM_020661 NM_020673 NM_020739 NM_020768 NM_020774 NM_020776 NM_020801 NM_020917 NM_020954 NM_021021 NM_021036 NM_021079 NM_021117 NM_021135 NM_021220 NM_021648 NM_021652 NM_021705 NM_021708 NM_021809 NM_021903 NM_021904 NM_021905 NM_021912 NM_021925 NM_021943 NM_022080 NM_022085 NM_022138 NM_022336 NM_022449 NM_022469 NM_022728 NM_022746 NM_022748 NM_022781 NM_022874 NM_022875 NM_022876 NM_022877 NM_022894 NM_023112 NM_023928 NM_024015 NM_024061 NM_024068 NM_024311 NM_024496 NM_024525 NM_024561 NM_024633 NM_024638 NM_024683 NM_024756 NM_024811 NM_024831 NM_024852 NM_024874 NM_024949 NM_024953 NM_024996 NM_025031 NM_025054 NM_025074 NM_025134 NM_025147 NM_025182 NM_030623 NM_030627 NM_030664 NM_030771 NM_030781 NM_030782 NM_030809 NM_030810 NM_030816 NM_030817 NM_030937 NM_031268 NM_031431 NM_031435 NM_031437 NM_031442 NM_031900 NM_031912 NM_031954 NM_032105 NM_032186 NM_032189 NM_032213 NM_032256 NM_032294 NM_032335 NM_032348 NM_032389 NM_032409 NM_032446 NM_032578 NM_032625 NM_032656 NM_032682 NM_032721 NM_032756 NM_032800 NM_032804 NM_032828 NM_032853 NM_032916 NM_033090 NM_033161 NM_033181 NM_033260 NM_033261 NM_033309 NM_033355 NM_033356 NM_033357 NM_033428 NM_033496 NM_033497 NM_033498 NM_033500 NM_033503 NM_033505 NM_052818 NM_052822 NM_052846 NM_052859 NM_052886 NM_054035 NM_058206 NM_058237 NM_078483 NM_078625 NM_080283 NM_080491 NM_080546 NM_080921 NM_080922 NM_130446 NM_130465 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_130845 NM_133170 NM_133486 NM_138348 NM_138361 NM_138400 NM_138444 NM_138494 NM_139126 NM_139239 NM_139246 NM_139276 NM_139278 NM_144601 NM_144711 NM_144980 NM_144996 NM_145011 NM_145013 NM_145035 NM_145160 NM_145162 NM_145170 NM_145239 NM_145323 NM_145324 NM_145691 NM_145764 NM_145791 NM_145792 NM_147134 NM_148170 NM_152244 NM_152262 NM_152330 NM_152349 NM_152412 NM_152417 NM_152556 NM_152613 NM_152623 NM_152638 NM_152673 NM_152720 NM_152721 NM_152758 NM_152776 NM_152838 NM_152872 NM_152873 NM_152874 NM_152875 NM_152876 NM_152877 NM_152878 NM_152991 NM_152994 NM_153029 NM_153031 NM_153045 NM_153235 NM_153255 NM_153346 NM_153348 NM_153365 NM_153450 NM_153703 NM_153712 NM_153826 NM_170609 NM_170741 NM_170742 NM_172206 NM_172232 NM_172234 NM_172350 NM_172351 NM_172352 NM_172353 NM_172354 NM_172355 NM_172356 NM_172357 NM_172358 NM_172359 NM_172360 NM_172361 NM_172386 NM_172387 NM_172388 NM_172389 NM_173075 NM_173156 NM_173198 NM_173200 NM_173463 NM_173468 NM_173477 NM_173536 NM_173576 NM_173599 NM_173631 NM_173632 NM_173698 NM_173791 NM_173809 NM_174911 NM_174975 NM_175854 NM_175862 NM_176825 NM_177422 NM_177442 NM_177555 NM_177558 NM_177972 NM_178140 NM_178349 NM_178426 NM_178427 NM_178450 NM_178509 NM_178516 NM_178544 NM_178562 NM_178571 NM_178818 NM_178850 NM_181076 NM_181077 NM_181349 NM_181534 NM_181553 NM_181554 NM_181555 NM_181572 NM_181618 NM_181717 NM_181847 NM_181874 NM_182499 NM_182522 NM_182564 NM_182663 NM_182664 NM_182665 NM_182697 NM_182896 NM_183393 NM_183394 NM_194278 NM_194317 NM_194328 NM_194329 NM_194330 NM_194331 NM_194332 NM_194452 NM_194453 NM_198236 NM_198240 NM_198243 NM_198440 NM_198442 NM_198474 NM_198515 NM_198569 NM_198793 NM_198835 NM_198849 NM_198935 NM_199005 NM_199044 NM_199054 NM_199072 NM_199186 NM_201269 NM_201432 NM_201433 NM_201568 NM_201569 NM_201570 NM_201571 NM_201572 NM_201590 NM_201593 NM_201596 NM_201597 NM_203372 NM_203381 NM_206860 NM_206861 NM_206862 NM_206908 NM_206912 NM_207306 NM_207388 NM_207400 NM_207406 NM_207444 NM_207454 NM_207467 NM_207514 NM_212535 NM_213612 NM_213662 XM_028810 XM_034872 XM_036115 XM_039393 XM_039515 XM_040592 XM_044434 XM_087353 XM_087386 XM_093839 XM_114415 XM_117294 XM_166132 XM_290737 XM_290854 XM_291204 XM_294521 XM_370654 XM_371117 XM_371139 XM_371184 XM_371680 XM_371760 XM_372050 XM_373468 XM_373715 XM_373765 XM_374437 XM_375090 XM_375527 XM_375697 XM_376334 XM_376436 XM_376720 XM_377506 XM_378419 XM_378487 XM_378703 XM_378708 XM_378712 XM_378747 XM_378941 XM_378964 XM_379030 XM_379044 XM_379075 XM_379164 XM_379359 XM_379403 XM_379438 XM_379510 XM_379664 XM_379665 XM_379671 XM_379927 XM_379967 XM_380131 XM_495849 XM_495909 XM_496241 XM_496328 XM_496513 XM_496664 XM_496890 XM_496964 XM_498489 XM_498545 XM_498572 XM_498727 XM_498884 XM_498957 XM_499068 XM_499110 XM_499187 XM_499313 XM_499519 XR_000227 XR_000266	Genes with multiple seed matches: NM_001009956 NM_001009960 NM_001015045 NM_001025079 NM_001025080 NM_001163 NM_001777 NM_003150 NM_004454 NM_004965 NM_005044 NM_005214 NM_005725 NM_005840 NM_005902 NM_012409 NM_014141 NM_014867 NM_014883 NM_015094 NM_015557 NM_016083 NM_016205 NM_017577 NM_019022 NM_021036 NM_021708 NM_022336 NM_024874 NM_031437 NM_032446 NM_033181 NM_138494 NM_139276 NM_144711 NM_152758 NM_174911 NM_178450 NM_181572 NM_182665 NM_198474 NM_198793 NM_203381 NM_213662 XM_036115 XM_087386

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA