VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"auguggaauuggacgcguu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
370
.
Total Genes with multiple seed matches:
29
.
Genes with at least one seed match:
NM_000021 NM_000068 NM_000071 NM_000088 NM_000246 NM_000252 NM_000332 NM_000451 NM_000525 NM_000566 NM_000635 NM_000719 NM_000742 NM_000793 NM_000814 NM_000951 NM_001001433 NM_001001434 NM_001001795 NM_001002861 NM_001003686 NM_001003687 NM_001004302 NM_001005386 NM_001007023 NM_001007278 NM_001008528 NM_001008925 NM_001009820 NM_001009880 NM_001009922 NM_001010910 NM_001012267 NM_001012514 NM_001012516 NM_001012981 NM_001013637 NM_001013685 NM_001014831 NM_001014832 NM_001014833 NM_001014834 NM_001014835 NM_001018096 NM_001024460 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001206 NM_001229 NM_001375 NM_001419 NM_001517 NM_001649 NM_001678 NM_001759 NM_001896 NM_001991 NM_001995 NM_002073 NM_002074 NM_002171 NM_002196 NM_002226 NM_002284 NM_002359 NM_002385 NM_002656 NM_002744 NM_002957 NM_003015 NM_003084 NM_003089 NM_003107 NM_003110 NM_003216 NM_003247 NM_003255 NM_003300 NM_003498 NM_003505 NM_003605 NM_003657 NM_003701 NM_003763 NM_003834 NM_003842 NM_003950 NM_004050 NM_004273 NM_004316 NM_004474 NM_004518 NM_004650 NM_004738 NM_004759 NM_005069 NM_005093 NM_005124 NM_005194 NM_005314 NM_005412 NM_005431 NM_005432 NM_005567 NM_005613 NM_005629 NM_005722 NM_005798 NM_005884 NM_005904 NM_005975 NM_005986 NM_005990 NM_006096 NM_006160 NM_006359 NM_006454 NM_006464 NM_006500 NM_006718 NM_006827 NM_006943 NM_007077 NM_007203 NM_007318 NM_012075 NM_012320 NM_012409 NM_012429 NM_012458 NM_013313 NM_013364 NM_013373 NM_013397 NM_013433 NM_013960 NM_013989 NM_014505 NM_014556 NM_014665 NM_014667 NM_014700 NM_014704 NM_014738 NM_014851 NM_015033 NM_015085 NM_015099 NM_015113 NM_015140 NM_015178 NM_015198 NM_015205 NM_015227 NM_015264 NM_015282 NM_015292 NM_015347 NM_015349 NM_015409 NM_015436 NM_015438 NM_015558 NM_015666 NM_015669 NM_015865 NM_015898 NM_015949 NM_015995 NM_016155 NM_016196 NM_016308 NM_016463 NM_016592 NM_016941 NM_017671 NM_017728 NM_017896 NM_017994 NM_018014 NM_018210 NM_018244 NM_018246 NM_018342 NM_018399 NM_018419 NM_018702 NM_018941 NM_018964 NM_019009 NM_019850 NM_020064 NM_020126 NM_020163 NM_020182 NM_020211 NM_020227 NM_020326 NM_020429 NM_020438 NM_020445 NM_020655 NM_020693 NM_020742 NM_020761 NM_020836 NM_020851 NM_020971 NM_021079 NM_021248 NM_021570 NM_021641 NM_021828 NM_021912 NM_021943 NM_022080 NM_022105 NM_022114 NM_022156 NM_022477 NM_022479 NM_022737 NM_022755 NM_024100 NM_024627 NM_024633 NM_024817 NM_024830 NM_024877 NM_025196 NM_025213 NM_025250 NM_030665 NM_030753 NM_030783 NM_030817 NM_030926 NM_030959 NM_031309 NM_031429 NM_031463 NM_031477 NM_031866 NM_031897 NM_032013 NM_032108 NM_032160 NM_032189 NM_032261 NM_032268 NM_032295 NM_032329 NM_032711 NM_032797 NM_032809 NM_032878 NM_032960 NM_032996 NM_033012 NM_033161 NM_033274 NM_052811 NM_053005 NM_053281 NM_058183 NM_078625 NM_080730 NM_080731 NM_080796 NM_080797 NM_130848 NM_134433 NM_138298 NM_138299 NM_138415 NM_138553 NM_138559 NM_138799 NM_144667 NM_145058 NM_145064 NM_145159 NM_145646 NM_145725 NM_145726 NM_145814 NM_145815 NM_147150 NM_147187 NM_147189 NM_152321 NM_152611 NM_152632 NM_152888 NM_152889 NM_153183 NM_153229 NM_153247 NM_153717 NM_172367 NM_173477 NM_173527 NM_173610 NM_175062 NM_175864 NM_175887 NM_175895 NM_177436 NM_178004 NM_178818 NM_181332 NM_181349 NM_182533 NM_183337 NM_198317 NM_198553 NM_198867 NM_198935 NM_199050 NM_199169 NM_199170 NM_199171 NM_199454 NM_199487 NM_199513 NM_203301 NM_203307 NM_203353 NM_203481 NM_207113 NM_207306 NM_207394 NM_207461 NM_207470 NM_207473 NM_212464 NM_213590 XM_038150 XM_042698 XM_053966 XM_211764 XM_371074 XM_372716 XM_374141 XM_375665 XM_376207 XM_378329 XM_378625 XM_379214 XM_379381 XM_379458 XM_379541 XM_379637 XM_379657 XM_496271 XM_496335 XM_496877 XM_496962 XM_496976 XM_496981 XM_498481 XM_498587 XM_498823 XM_498904 XM_498919 XM_499093
Genes with multiple seed matches:
NM_000951 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001649 NM_002385 NM_003300 NM_006454 NM_012409 NM_013960 NM_014665 NM_014851 NM_015099 NM_015205 NM_016196 NM_017896 NM_017994 NM_018210 NM_018246 NM_018702 NM_022114 NM_032189 NM_145725 NM_145726 NM_178818 NM_199454
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)