VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gggaccaugcagaaccugcacgauu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1131
.
Total Genes with multiple seed matches:
76
.
Genes with at least one seed match:
NM_000037 NM_000093 NM_000097 NM_000109 NM_000139 NM_000151 NM_000189 NM_000212 NM_000226 NM_000240 NM_000243 NM_000244 NM_000268 NM_000272 NM_000283 NM_000319 NM_000333 NM_000376 NM_000380 NM_000396 NM_000450 NM_000452 NM_000458 NM_000503 NM_000512 NM_000525 NM_000544 NM_000554 NM_000599 NM_000605 NM_000610 NM_000636 NM_000655 NM_000661 NM_000732 NM_000821 NM_000843 NM_000870 NM_000916 NM_000921 NM_000961 NM_000997 NM_001000 NM_001001188 NM_001001331 NM_001001349 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001001414 NM_001001549 NM_001001550 NM_001001555 NM_001001679 NM_001001684 NM_001001687 NM_001001704 NM_001001790 NM_001001928 NM_001001929 NM_001001930 NM_001002758 NM_001002926 NM_001003686 NM_001003687 NM_001003688 NM_001003794 NM_001004054 NM_001004314 NM_001004325 NM_001004417 NM_001004421 NM_001004422 NM_001005359 NM_001005364 NM_001005372 NM_001005387 NM_001005502 NM_001006636 NM_001006665 NM_001007098 NM_001007169 NM_001007240 NM_001007241 NM_001007242 NM_001007262 NM_001007466 NM_001007538 NM_001007542 NM_001007546 NM_001007560 NM_001008408 NM_001008707 NM_001008744 NM_001008801 NM_001009566 NM_001009880 NM_001009939 NM_001009956 NM_001009957 NM_001010864 NM_001010891 NM_001010971 NM_001011656 NM_001011658 NM_001012329 NM_001012393 NM_001012508 NM_001012714 NM_001012733 NM_001012734 NM_001012982 NM_001013682 NM_001013695 NM_001013704 NM_001013727 NM_001013728 NM_001014283 NM_001014440 NM_001014797 NM_001014809 NM_001015045 NM_001017369 NM_001017415 NM_001017416 NM_001017535 NM_001017916 NM_001017917 NM_001017918 NM_001017930 NM_001017964 NM_001017965 NM_001018009 NM_001018029 NM_001018064 NM_001018111 NM_001024226 NM_001024227 NM_001024228 NM_001024465 NM_001024466 NM_001024646 NM_001024736 NM_001024921 NM_001025079 NM_001025080 NM_001025108 NM_001025295 NM_001044 NM_001046 NM_001116 NM_001121 NM_001186 NM_001204 NM_001224 NM_001313 NM_001332 NM_001419 NM_001420 NM_001432 NM_001502 NM_001554 NM_001570 NM_001616 NM_001642 NM_001655 NM_001656 NM_001658 NM_001683 NM_001777 NM_001816 NM_001826 NM_001830 NM_001874 NM_001915 NM_001937 NM_001944 NM_001960 NM_001977 NM_001993 NM_002025 NM_002072 NM_002073 NM_002131 NM_002135 NM_002196 NM_002247 NM_002264 NM_002285 NM_002337 NM_002403 NM_002417 NM_002431 NM_002451 NM_002505 NM_002514 NM_002545 NM_002595 NM_002609 NM_002623 NM_002631 NM_002657 NM_002668 NM_002688 NM_002721 NM_002733 NM_002760 NM_002775 NM_002833 NM_002938 NM_002953 NM_002959 NM_002960 NM_003003 NM_003009 NM_003017 NM_003042 NM_003072 NM_003101 NM_003112 NM_003115 NM_003118 NM_003123 NM_003133 NM_003137 NM_003155 NM_003190 NM_003215 NM_003217 NM_003236 NM_003247 NM_003257 NM_003347 NM_003363 NM_003368 NM_003417 NM_003458 NM_003472 NM_003481 NM_003607 NM_003660 NM_003682 NM_003748 NM_003799 NM_003831 NM_003872 NM_003899 NM_003909 NM_003946 NM_003950 NM_003954 NM_003968 NM_003980 NM_003981 NM_004006 NM_004007 NM_004009 NM_004010 NM_004011 NM_004012 NM_004013 NM_004014 NM_004015 NM_004016 NM_004017 NM_004018 NM_004020 NM_004021 NM_004022 NM_004023 NM_004090 NM_004153 NM_004170 NM_004171 NM_004215 NM_004273 NM_004315 NM_004330 NM_004364 NM_004370 NM_004382 NM_004407 NM_004429 NM_004434 NM_004437 NM_004501 NM_004523 NM_004527 NM_004600 NM_004627 NM_004660 NM_004676 NM_004716 NM_004776 NM_004796 NM_004798 NM_004844 NM_004849 NM_004911 NM_004914 NM_004925 NM_004931 NM_004975 NM_004985 NM_005036 NM_005063 NM_005065 NM_005073 NM_005139 NM_005171 NM_005178 NM_005184 NM_005311 NM_005342 NM_005373 NM_005395 NM_005397 NM_005418 NM_005453 NM_005458 NM_005515 NM_005540 NM_005570 NM_005584 NM_005651 NM_005670 NM_005737 NM_005762 NM_005831 NM_005893 NM_005895 NM_005900 NM_005902 NM_005933 NM_005965 NM_006044 NM_006045 NM_006047 NM_006074 NM_006084 NM_006094 NM_006100 NM_006180 NM_006213 NM_006215 NM_006251 NM_006254 NM_006261 NM_006262 NM_006282 NM_006290 NM_006297 NM_006359 NM_006361 NM_006407 NM_006409 NM_006481 NM_006541 NM_006555 NM_006587 NM_006628 NM_006745 NM_006772 NM_006773 NM_006774 NM_006814 NM_006817 NM_006924 NM_006936 NM_006974 NM_006987 NM_007050 NM_007078 NM_007085 NM_007227 NM_007249 NM_007257 NM_007283 NM_007306 NM_007335 NM_007336 NM_007338 NM_007350 NM_012156 NM_012193 NM_012210 NM_012218 NM_012231 NM_012243 NM_012253 NM_012287 NM_012288 NM_012307 NM_012309 NM_012405 NM_012413 NM_012463 NM_012479 NM_012482 NM_013261 NM_013351 NM_013364 NM_013416 NM_013447 NM_013448 NM_013999 NM_014015 NM_014070 NM_014112 NM_014157 NM_014293 NM_014298 NM_014310 NM_014319 NM_014322 NM_014331 NM_014354 NM_014386 NM_014395 NM_014398 NM_014442 NM_014489 NM_014517 NM_014554 NM_014563 NM_014661 NM_014697 NM_014723 NM_014724 NM_014779 NM_014787 NM_014792 NM_014826 NM_014864 NM_014872 NM_014883 NM_014913 NM_014914 NM_014925 NM_014926 NM_014931 NM_014932 NM_014944 NM_014947 NM_014964 NM_014969 NM_014974 NM_015058 NM_015064 NM_015066 NM_015076 NM_015077 NM_015086 NM_015093 NM_015100 NM_015101 NM_015172 NM_015205 NM_015264 NM_015267 NM_015278 NM_015285 NM_015299 NM_015310 NM_015317 NM_015318 NM_015330 NM_015375 NM_015426 NM_015488 NM_015553 NM_015613 NM_015684 NM_015696 NM_015725 NM_015898 NM_015955 NM_016040 NM_016083 NM_016114 NM_016132 NM_016206 NM_016219 NM_016248 NM_016270 NM_016339 NM_016389 NM_016418 NM_016575 NM_016590 NM_016621 NM_016643 NM_016824 NM_016941 NM_017420 NM_017437 NM_017459 NM_017514 NM_017595 NM_017637 NM_017638 NM_017656 NM_017704 NM_017723 NM_017734 NM_017770 NM_017774 NM_017826 NM_017831 NM_017849 NM_017877 NM_017891 NM_017943 NM_017952 NM_017968 NM_017975 NM_018018 NM_018045 NM_018050 NM_018073 NM_018110 NM_018120 NM_018135 NM_018176 NM_018185 NM_018231 NM_018246 NM_018267 NM_018283 NM_018319 NM_018339 NM_018340 NM_018361 NM_018370 NM_018374 NM_018396 NM_018579 NM_018584 NM_018638 NM_018657 NM_018667 NM_018697 NM_019001 NM_019006 NM_019014 NM_019055 NM_019059 NM_019086 NM_019094 NM_019117 NM_019618 NM_019850 NM_019885 NM_019903 NM_020125 NM_020133 NM_020148 NM_020170 NM_020208 NM_020238 NM_020245 NM_020248 NM_020381 NM_020406 NM_020416 NM_020436 NM_020438 NM_020456 NM_020462 NM_020475 NM_020476 NM_020477 NM_020526 NM_020640 NM_020655 NM_020657 NM_020661 NM_020673 NM_020697 NM_020703 NM_020704 NM_020714 NM_020739 NM_020768 NM_020776 NM_020804 NM_020826 NM_020860 NM_020895 NM_020914 NM_020979 NM_021064 NM_021116 NM_021164 NM_021192 NM_021213 NM_021222 NM_021258 NM_021635 NM_021705 NM_021815 NM_022041 NM_022062 NM_022063 NM_022082 NM_022151 NM_022343 NM_022370 NM_022405 NM_022458 NM_022461 NM_022463 NM_022491 NM_022570 NM_022572 NM_022574 NM_022720 NM_022730 NM_022743 NM_022755 NM_022766 NM_022905 NM_023008 NM_023032 NM_023927 NM_023933 NM_023939 NM_024043 NM_024055 NM_024085 NM_024086 NM_024094 NM_024295 NM_024296 NM_024492 NM_024511 NM_024625 NM_024633 NM_024659 NM_024665 NM_024677 NM_024738 NM_024760 NM_024779 NM_024798 NM_024835 NM_024859 NM_024869 NM_024942 NM_024948 NM_025042 NM_025082 NM_025140 NM_025240 NM_030576 NM_030580 NM_030630 NM_030633 NM_030634 NM_030640 NM_030645 NM_030774 NM_030809 NM_030882 NM_030918 NM_030919 NM_030930 NM_031211 NM_031310 NM_031444 NM_031474 NM_031479 NM_031485 NM_031844 NM_031887 NM_031888 NM_031890 NM_031949 NM_031962 NM_032017 NM_032145 NM_032189 NM_032214 NM_032271 NM_032281 NM_032296 NM_032329 NM_032352 NM_032356 NM_032378 NM_032389 NM_032423 NM_032523 NM_032529 NM_032553 NM_032558 NM_032587 NM_032797 NM_032815 NM_032829 NM_032837 NM_032842 NM_032853 NM_032869 NM_032982 NM_032983 NM_032984 NM_033025 NM_033033 NM_033034 NM_033064 NM_033181 NM_033225 NM_033315 NM_033332 NM_033346 NM_033357 NM_033360 NM_033394 NM_033505 NM_033626 NM_052834 NM_052847 NM_052903 NM_052905 NM_052969 NM_052972 NM_053025 NM_053026 NM_053027 NM_053028 NM_053029 NM_053030 NM_053031 NM_053032 NM_053042 NM_053045 NM_053055 NM_057175 NM_058168 NM_058178 NM_058184 NM_080551 NM_080552 NM_080607 NM_080618 NM_080628 NM_080645 NM_080656 NM_080741 NM_080822 NM_080915 NM_130470 NM_130471 NM_130472 NM_130473 NM_130474 NM_130475 NM_130476 NM_130799 NM_130800 NM_130801 NM_130802 NM_130803 NM_130804 NM_130809 NM_133170 NM_133265 NM_133279 NM_133280 NM_133460 NM_138400 NM_138402 NM_138450 NM_138770 NM_138788 NM_138970 NM_138999 NM_139157 NM_139201 NM_139321 NM_144600 NM_144677 NM_144684 NM_144977 NM_144997 NM_145173 NM_145175 NM_145185 NM_145273 NM_145309 NM_145342 NM_145349 NM_145350 NM_145351 NM_145637 NM_145652 NM_145727 NM_145739 NM_145899 NM_145901 NM_145902 NM_145903 NM_145904 NM_145905 NM_145906 NM_146388 NM_148170 NM_148175 NM_148176 NM_148571 NM_148921 NM_152247 NM_152253 NM_152269 NM_152272 NM_152287 NM_152302 NM_152311 NM_152313 NM_152367 NM_152420 NM_152437 NM_152551 NM_152655 NM_152694 NM_152723 NM_152763 NM_152838 NM_152889 NM_152906 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921 NM_152997 NM_152999 NM_153010 NM_153013 NM_153025 NM_153026 NM_153032 NM_153036 NM_153207 NM_153247 NM_153254 NM_153261 NM_153344 NM_153381 NM_153487 NM_153752 NM_153810 NM_153812 NM_170705 NM_171982 NM_172058 NM_172059 NM_172060 NM_172099 NM_172217 NM_172234 NM_172345 NM_173075 NM_173157 NM_173476 NM_173529 NM_173531 NM_173551 NM_173562 NM_173651 NM_173803 NM_173827 NM_173833 NM_175077 NM_175610 NM_175619 NM_175892 NM_175895 NM_175901 NM_176853 NM_176878 NM_177924 NM_177996 NM_178011 NM_178037 NM_178038 NM_178039 NM_178040 NM_178159 NM_178423 NM_178578 NM_178579 NM_181336 NM_181489 NM_181654 NM_181709 NM_181725 NM_181784 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181846 NM_181876 NM_182488 NM_182506 NM_182511 NM_182526 NM_182540 NM_182546 NM_182568 NM_182643 NM_182648 NM_182703 NM_182791 NM_182812 NM_182831 NM_182832 NM_182920 NM_194287 NM_194310 NM_197947 NM_197948 NM_197949 NM_197950 NM_197951 NM_197952 NM_197953 NM_198066 NM_198120 NM_198157 NM_198195 NM_198197 NM_198320 NM_198545 NM_198571 NM_198584 NM_198686 NM_198793 NM_198907 NM_198955 NM_199040 NM_199045 NM_199126 NM_199132 NM_199141 NM_199182 NM_199413 NM_199414 NM_199443 NM_199462 NM_201266 NM_201279 NM_203303 NM_203342 NM_203343 NM_203395 NM_205857 NM_206835 NM_206853 NM_206854 NM_206855 NM_206866 NM_206887 NM_206907 NM_206909 NM_207171 NM_207310 NM_207335 NM_207348 NM_207390 NM_207395 NM_207406 NM_207419 NM_207448 NM_207463 NM_207470 NM_207489 NM_207497 NM_207517 NM_212461 NM_212539 NM_213568 NM_213618 XM_027307 XM_032901 XM_035299 XM_038150 XM_044062 XM_047550 XM_047554 XM_051200 XM_058720 XM_058967 XM_059482 XM_061890 XM_097580 XM_113947 XM_167044 XM_168053 XM_171054 XM_173132 XM_208312 XM_208835 XM_208990 XM_209196 XM_209700 XM_211367 XM_211694 XM_211908 XM_290597 XM_291019 XM_370995 XM_371176 XM_371204 XM_371461 XM_371488 XM_371778 XM_372267 XM_372556 XM_373030 XM_373453 XM_373549 XM_373695 XM_373704 XM_373845 XM_373894 XM_373970 XM_373981 XM_374053 XM_374256 XM_374766 XM_374902 XM_375007 XM_375272 XM_375491 XM_375619 XM_375669 XM_375821 XM_375838 XM_375929 XM_376186 XM_376207 XM_376212 XM_376560 XM_376586 XM_376727 XM_378211 XM_378272 XM_378321 XM_378327 XM_378379 XM_378389 XM_378413 XM_378437 XM_378550 XM_378617 XM_378735 XM_378750 XM_378883 XM_378886 XM_378964 XM_378985 XM_379121 XM_379189 XM_379194 XM_379249 XM_379276 XM_379327 XM_379395 XM_379459 XM_379534 XM_379547 XM_379637 XM_379643 XM_379780 XM_379798 XM_379979 XM_380159 XM_495807 XM_495891 XM_495937 XM_496036 XM_496041 XM_496044 XM_496134 XM_496183 XM_496216 XM_496251 XM_496328 XM_496351 XM_496383 XM_496724 XM_496782 XM_497036 XM_497160 XM_498437 XM_498440 XM_498454 XM_498459 XM_498559 XM_498581 XM_498596 XM_498646 XM_498647 XM_498649 XM_498852 XM_498972 XM_499029 XM_499085 XM_499131 XM_499139 XM_499142 XM_499146 XM_499152 XM_499155 XM_499309 XM_499570 XM_499583 XM_499589 XR_000190 XR_000261 XR_000292
Genes with multiple seed matches:
NM_000319 NM_000376 NM_000961 NM_001007546 NM_001009566 NM_001009880 NM_001012714 NM_001012733 NM_001012734 NM_001014283 NM_001017535 NM_001024646 NM_001025108 NM_002025 NM_002285 NM_002514 NM_003190 NM_003950 NM_005063 NM_005342 NM_005584 NM_006361 NM_007085 NM_007249 NM_007257 NM_007335 NM_007336 NM_007338 NM_012218 NM_012405 NM_014310 NM_014354 NM_014386 NM_014724 NM_014792 NM_014944 NM_014947 NM_015264 NM_017723 NM_017849 NM_018185 NM_019094 NM_020133 NM_022570 NM_024296 NM_024492 NM_024665 NM_030634 NM_052847 NM_058184 NM_145309 NM_145727 NM_152906 NM_153812 NM_170705 NM_172345 NM_173803 NM_182568 NM_194287 NM_197947 NM_197948 NM_197949 NM_197950 NM_197951 NM_197952 NM_197953 NM_199040 XM_113947 XM_208990 XM_371204 XM_371461 XM_373704 XM_378379 XM_379459 XM_496251 XM_498559
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)